Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 2.3e-179 632.1 316 100.0
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 2.7e-132 475.7 316 74.7
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 1.4e-131 473.4 312 75.3
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 5.2e-131 471.5 314 74.2
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 6.8e-131 471.1 324 71.6
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 8.8e-131 470.7 327 69.4
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.2e-130 470.3 322 73.6
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 2.0e-130 469.5 313 74.1
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.6e-130 469.2 313 73.8
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 5.7e-130 468.0 317 72.6
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 9.8e-130 467.2 318 72.6
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.3e-129 466.8 311 74.0
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 3.7e-129 465.3 318 73.0
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 1.4e-128 463.4 311 73.0
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 1.8e-128 463.0 313 72.8
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 2.4e-128 462.6 324 71.9
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 7.0e-128 461.1 313 71.6
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.0e-127 459.5 315 72.4
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 2.7e-127 459.1 318 72.0
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.5e-127 458.8 320 71.6
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 3.5e-127 458.8 320 71.6
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.5e-127 458.8 318 72.0
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 3.5e-127 458.8 315 70.8
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.7e-126 456.4 318 72.0
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.7e-126 456.4 316 69.6
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 3.8e-126 455.3 320 71.2
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 5.0e-126 454.9 314 70.7
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 5.0e-126 454.9 300 74.0
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.1e-125 453.8 311 72.3
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.1e-125 453.8 316 72.5
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.9e-125 453.0 301 74.4
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 3.3e-125 452.2 318 71.1
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 3.3e-125 452.2 315 72.4
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 4.2e-125 451.8 315 71.7
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 5.5e-125 451.4 317 71.0
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 1.2e-124 450.3 315 71.1
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.2e-124 450.3 303 73.9
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 1.6e-124 449.9 315 71.1
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 2.1e-124 449.5 320 70.0
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 2.1e-124 449.5 312 72.1
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 2.8e-124 449.1 309 71.8
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 3.6e-124 448.7 316 71.5
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 6.1e-124 448.0 314 70.4
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 8.0e-124 447.6 309 70.2
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.0e-123 447.2 311 70.7
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 1.0e-123 447.2 314 70.7
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.0e-123 447.2 314 70.7
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.8e-123 446.4 314 71.0
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 1.8e-123 446.4 314 70.4
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 1.8e-123 446.4 314 69.4
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 2.3e-123 446.0 312 71.2
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 2.3e-123 446.0 314 70.4
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 3.0e-123 445.7 314 70.7
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 4.0e-123 445.3 318 71.1
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 5.2e-123 444.9 314 71.7
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 5.2e-123 444.9 314 70.7
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.5e-122 443.4 318 70.8
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 4.4e-122 441.8 314 70.1
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 7.5e-122 441.0 315 69.2
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 7.5e-122 441.0 314 69.7
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 1.7e-121 439.9 317 69.1
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 2.2e-121 439.5 313 70.3
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 1.4e-120 436.8 314 69.1
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.8e-120 436.4 306 69.9
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 5.4e-120 434.9 318 69.2
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 9.2e-120 434.1 311 69.5
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 2.0e-119 433.0 314 68.5
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 1.0e-118 430.6 341 64.8
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 1.3e-118 430.3 312 69.2
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 3.9e-118 428.7 317 68.1
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 5.0e-118 428.3 311 68.2
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 6.6e-118 427.9 313 67.7
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 8.6e-118 427.6 308 69.2
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 4.3e-117 425.2 310 68.1
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 7.3e-117 424.5 319 67.1
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 9.5e-117 424.1 316 67.1
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 2.1e-116 422.9 314 68.2
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 2.1e-116 422.9 309 67.6
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 2.1e-116 422.9 317 67.2
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 4.7e-116 421.8 316 66.8
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 2.0e-114 416.4 317 66.6
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 7.5e-114 414.5 282 70.6
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 2.9e-113 412.5 323 64.4
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 3.7e-113 412.1 311 66.2
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 4.9e-113 411.8 305 68.2
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 4.1e-112 408.7 317 65.6
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 3.5e-111 405.6 336 61.6
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 4.6e-111 405.2 315 65.7
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 2.3e-107 392.9 317 64.4
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 3.1e-107 392.5 310 62.9
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 1.5e-106 390.2 332 59.6
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 2.7e-103 379.4 281 67.3
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 1.9e-101 373.2 316 62.7
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 9.5e-101 370.9 378 54.0
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 2.1e-100 369.8 302 61.6
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 1.4e-99 367.1 307 61.2
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 2.6e-98 362.8 279 65.2
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 7.6e-98 361.3 310 59.4
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 2.7e-95 352.8 234 73.1
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.2e-92 344.0 227 70.9
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 3.6e-92 342.4 307 57.3
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 3.1e-91 339.3 306 57.2
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.4e-90 335.9 308 54.5
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 5.8e-90 335.1 306 53.3
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 4.3e-85 318.9 280 61.8
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 1.2e-82 310.8 232 69.8
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 4.6e-79 298.9 353 46.5
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 6.6e-78 295.0 237 61.6
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 3.3e-77 292.7 198 69.7
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 9.3e-72 274.6 343 45.5
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 3.0e-70 269.6 174 78.2
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.3e-69 266.2 208 65.9
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 6.5e-65 251.9 190 61.6
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 2.8e-52 209.9 216 50.9
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 6.9e-51 205.3 156 63.5
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 3.4e-50 203.0 235 52.3
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 1.0e-46 191.4 288 40.6
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 9.7e-45 184.9 161 55.9
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 2.4e-43 180.3 191 56.0
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 4.5e-42 176.0 108 74.1
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 8.8e-38 161.8 307 37.5
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 3.1e-35 153.3 336 34.2
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.8e-30 137.5 123 61.0
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 2.6e-26 123.6 121 60.3
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 4.0e-22 109.8 121 55.4
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 1.2e-21 108.2 82 69.5
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 2.0e-21 107.5 107 50.5
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 3.4e-21 106.7 149 40.9
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 4.4e-21 106.3 165 44.2
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 8.3e-20 102.1 119 47.1
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 3.1e-19 100.1 70 64.3
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 4.1e-19 99.8 78 69.2
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 9.1e-19 98.6 85 56.5
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.7e-17 94.4 62 75.8
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 2.2e-17 94.0 68 69.1
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 1.8e-14 84.3 81 59.3
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 5.2e-14 82.8 89 52.8
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 4.9e-12 76.3 60 65.0
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 5.4e-11 72.8 83 51.8
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 1.4e-06 58.2 56 57.1
Actinidia30088 Actinidia chinensis HOM05D005470 ORTHO05D057321 5.2e-06 56.2 44 68.2


User provided reference genes

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