Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1292 Punica granatum HOM05D004238 ORTHO05D004934 1.9e-237 825.5 423 100.0
GSVIVG01008335001 Vitis vinifera HOM05D004238 ORTHO05D004934 3.5e-175 618.6 392 78.6
Dinv28139 Davidia involucrata HOM05D004238 ORTHO05D004934 4.6e-175 618.2 407 77.4
RcHm_v2.0_Chr7g0179451 Rosa chinensis HOM05D004238 ORTHO05D004934 3.3e-173 612.1 419 75.4
MD14G1229600 Malus domestica HOM05D004238 ORTHO05D004934 2.1e-172 609.4 392 78.3
Duzib084G0471 Durio zibethinus HOM05D004238 ORTHO05D004934 8.1e-172 607.4 395 77.2
FAN13G1096 Fragaria x ananassa HOM05D004238 ORTHO05D004934 1.1e-171 607.1 419 74.7
CSS0018341 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 1.2e-170 603.6 410 74.6
Prupe.5G224400 Prunus persica HOM05D004238 ORTHO05D004934 2.0e-170 602.8 412 75.2
PGSC0003DMG400005732 Solanum tuberosum HOM05D004238 ORTHO05D004934 2.0e-170 602.8 400 75.8
CSS0035838 Camellia sinensis var. sinensis HOM05D004238 ORTHO05D004934 2.6e-170 602.4 409 74.3
FAN18G3483 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.6e-170 602.4 421 74.1
Haze_18725 Corylus avellana HOM05D004238 ORTHO05D004934 4.4e-170 601.7 429 72.5
TAR371G0763 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.4e-170 601.7 405 76.3
Hma1.2p1_1283F.1_g272760 Hydrangea macrophylla HOM05D004238 ORTHO05D004934 7.6e-170 600.9 407 74.9
Nitab4.5_0001986g0030 Nicotiana tabacum HOM05D004238 ORTHO05D004934 7.6e-170 600.9 423 72.1
Solyc03g119200.4 Solanum lycopersicum HOM05D004238 ORTHO05D004934 1.3e-169 600.1 401 75.1
CiPaw.16G088800 Carya illinoinensis HOM05D004238 ORTHO05D004934 2.2e-169 599.4 406 75.4
Lj4g0001453 Lotus japonicus HOM05D004238 ORTHO05D004934 1.9e-168 596.3 402 74.9
FAN08G0774 Fragaria x ananassa HOM05D004238 ORTHO05D004934 2.4e-168 595.9 434 72.1
CAN.G1129.11 Capsicum annuum HOM05D004238 ORTHO05D004934 3.2e-168 595.5 390 75.6
DCAR_015154 Daucus carota HOM05D004238 ORTHO05D004934 3.2e-168 595.5 385 77.9
Nitab4.5_0004028g0040 Nicotiana tabacum HOM05D004238 ORTHO05D004934 4.2e-168 595.1 401 74.3
Eucgr.B00825 Eucalyptus grandis HOM05D004238 ORTHO05D004934 5.4e-168 594.7 396 76.5
Thecc.03G040700 Theobroma cacao HOM05D004238 ORTHO05D004934 9.3e-168 594.0 397 75.6
TAR535G0010 Trochodendron aralioides HOM05D004238 ORTHO05D004934 9.3e-168 594.0 409 74.6
Atru.chr9.900 Acer truncatum HOM05D004238 ORTHO05D004934 1.2e-167 593.6 418 72.5
Lj9C425T3 Lonicera japonica HOM05D004238 ORTHO05D004934 1.2e-167 593.6 385 78.2
Psat7g083560 Pisum sativum HOM05D004238 ORTHO05D004934 2.1e-167 592.8 416 71.6
VMungo0251G1679 Vigna mungo HOM05D004238 ORTHO05D004934 2.1e-167 592.8 408 73.8
MBI09_g25158_MAGBIO Magnolia biondii HOM05D004238 ORTHO05D004934 2.7e-167 592.4 396 76.3
arahy.Tifrunner.gnm1.ann1.KCMD1F Arachis hypogaea HOM05D004238 ORTHO05D004934 3.5e-167 592.0 403 74.2
PSO017G2643 Papaver somniferum HOM05D004238 ORTHO05D004934 4.6e-167 591.7 405 74.6
Glyma.08G094600 Glycine max HOM05D004238 ORTHO05D004934 3.9e-166 588.6 422 71.6
arahy.Tifrunner.gnm1.ann1.NC6GJT Arachis hypogaea HOM05D004238 ORTHO05D004934 8.7e-166 587.4 407 73.2
Ca_11587_v3 Cicer arietinum L. HOM05D004238 ORTHO05D004934 4.3e-165 585.1 401 73.6
Glyma.05G139300 Glycine max HOM05D004238 ORTHO05D004934 4.3e-165 585.1 420 71.2
Phvul.002G182700 Phaseolus vulgaris HOM05D004238 ORTHO05D004934 9.6e-165 583.9 401 73.6
TPR.G5108 Trifolium pratense HOM05D004238 ORTHO05D004934 9.6e-165 583.9 401 73.3
CANSAT80G2380 Cannabis sativa HOM05D004238 ORTHO05D004934 1.3e-164 583.6 392 74.5
Lalb_Chr13g0293671 Lupinus albus HOM05D004238 ORTHO05D004934 2.1e-164 582.8 407 73.2
Cpa.g.sc3.467 Carica papaya HOM05D004238 ORTHO05D004934 2.8e-164 582.4 384 76.8
MELO3C017324.2 Cucumis melo HOM05D004238 ORTHO05D004934 2.8e-164 582.4 409 72.9
Potri.012G054200 Populus trichocarpa HOM05D004238 ORTHO05D004934 2.8e-164 582.4 412 73.1
Peaxi162Scf00683g00158 Petunia axillaris HOM05D004238 ORTHO05D004934 3.6e-164 582.0 415 71.1
Aqoxy3G00204 Aquilegia oxysepala HOM05D004238 ORTHO05D004934 6.2e-164 581.3 393 74.3
Hund02354 Selenicereus undatus HOM05D004238 ORTHO05D004934 6.2e-164 581.3 416 71.9
TWI15G0256 Tripterygium wilfordii HOM05D004238 ORTHO05D004934 8.1e-164 580.9 393 76.1
Sabra12G0038000 Salix brachista HOM05D004238 ORTHO05D004934 1.8e-163 579.7 403 72.5
Sed0011571 Sechium edule HOM05D004238 ORTHO05D004934 4.0e-163 578.6 409 71.4
COL.COLO4_20838 Corchorus olitorius HOM05D004238 ORTHO05D004934 6.9e-163 577.8 401 74.6
Nn4g23948 Nelumbo nucifera HOM05D004238 ORTHO05D004934 6.9e-163 577.8 408 73.3
CsaV3_1G004010 Cucumis sativus L. HOM05D004238 ORTHO05D004934 9.0e-163 577.4 402 72.9
Migut.I00409 Erythranthe guttata HOM05D004238 ORTHO05D004934 9.0e-163 577.4 399 72.9
ClCG06G014610 Citrullus lanatus HOM05D004238 ORTHO05D004934 5.8e-162 574.7 409 72.4
FAN04G1535 Fragaria x ananassa HOM05D004238 ORTHO05D004934 9.9e-162 573.9 421 72.0
Sc04g0003400 Simmondsia chinensis HOM05D004238 ORTHO05D004934 9.9e-162 573.9 400 73.5
FvH4_5g16670 Fragaria vesca HOM05D004238 ORTHO05D004934 8.4e-161 570.9 384 76.3
Lsat_1_v5_gn_8_143241 Lactuca sativa HOM05D004238 ORTHO05D004934 1.1e-160 570.5 418 72.0
Cc04_g06880 Coffea canephora HOM05D004238 ORTHO05D004934 2.4e-160 569.3 385 75.3
Oeu000985.1 Olea europaea HOM05D004238 ORTHO05D004934 5.4e-160 568.2 424 68.4
HanXRQChr17g0559411 Helianthus annuus HOM05D004238 ORTHO05D004934 1.9e-157 559.7 391 73.1
TAR426G0005 Trochodendron aralioides HOM05D004238 ORTHO05D004934 2.5e-157 559.3 377 75.9
MD06G1220000 Malus domestica HOM05D004238 ORTHO05D004934 4.3e-157 558.5 381 75.1
Gohir.D07G071400 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.6e-157 558.1 367 77.7
PSO478G0260 Papaver somniferum HOM05D004238 ORTHO05D004934 4.8e-156 555.1 382 73.3
MSTRG.11313 Avicennia marina HOM05D004238 ORTHO05D004934 9.0e-155 550.8 414 68.4
Os01g0138900 Oryza sativa ssp. japonica HOM05D004238 ORTHO05D004934 5.8e-154 548.1 384 72.4
ATR0807G117 Amborella trichopoda HOM05D004238 ORTHO05D004934 5.5e-152 541.6 383 72.8
Dinv12220 Davidia involucrata HOM05D004238 ORTHO05D004934 8.7e-150 534.3 403 68.7
BraA05t21977Z Brassica rapa HOM05D004238 ORTHO05D004934 4.3e-149 531.9 404 67.3
Rhsim08G0130500 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.6e-149 530.8 395 69.9
Rhsim08G0130600 Rhododendron simsii HOM05D004238 ORTHO05D004934 9.6e-149 530.8 395 69.9
A05p31380 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-148 530.4 404 67.1
Manes.01G014900 Manihot esculenta HOM05D004238 ORTHO05D004934 1.6e-148 530.0 404 69.3
BolC5t33477H Brassica oleracea HOM05D004238 ORTHO05D004934 2.1e-148 529.6 404 67.3
C05p47680 Brassica napus HOM05D004238 ORTHO05D004934 3.7e-148 528.9 404 67.3
Carub.0003s1804 Capsella rubella HOM05D004238 ORTHO05D004934 3.7e-148 528.9 402 65.9
HPP92_008849 Vanilla planifolia HOM05D004238 ORTHO05D004934 4.8e-148 528.5 386 69.4
Thhalv10020846m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 2.4e-147 526.2 385 68.3
Aa31LG8G5120 Aethionema arabicum HOM05D004238 ORTHO05D004934 6.9e-147 524.6 390 66.4
THA.LOC104820382 Tarenaya hassleriana HOM05D004238 ORTHO05D004934 2.0e-146 523.1 385 69.9
Gorai.001G075300 Gossypium raimondii HOM05D004238 ORTHO05D004934 1.0e-145 520.8 346 77.2
AL3G31500 Arabidopsis lyrata HOM05D004238 ORTHO05D004934 5.5e-144 515.0 388 66.0
DCAR_011373 Daucus carota HOM05D004238 ORTHO05D004934 7.1e-144 514.6 386 66.8
AT3G18270 Arabidopsis thaliana HOM05D004238 ORTHO05D004934 1.0e-142 510.8 386 65.8
Dinv34796 Davidia involucrata HOM05D004238 ORTHO05D004934 1.3e-142 510.4 384 66.7
Thhalv10022164m.g Eutrema salsugineum HOM05D004238 ORTHO05D004934 3.7e-140 502.3 372 68.0
DCAR_011371 Daucus carota HOM05D004238 ORTHO05D004934 2.4e-139 499.6 347 71.5
Atru.chr1.1618 Acer truncatum HOM05D004238 ORTHO05D004934 5.5e-136 488.4 404 62.9
Ciclev10011789m.g Citrus clementina HOM05D004238 ORTHO05D004934 6.1e-135 485.0 401 62.8
Manes.02G071200 Manihot esculenta HOM05D004238 ORTHO05D004934 5.7e-133 478.4 402 60.4
Duzib138G0550 Durio zibethinus HOM05D004238 ORTHO05D004934 1.3e-132 477.2 398 62.1
DCAR_024088 Daucus carota HOM05D004238 ORTHO05D004934 2.2e-132 476.5 329 71.1
CiPaw.15G135000 Carya illinoinensis HOM05D004238 ORTHO05D004934 9.1e-131 471.1 317 74.8
CDE08G0051 Ceratophyllum demersum HOM05D004238 ORTHO05D004934 4.5e-130 468.8 383 61.6
Gohir.D11G171700 Gossypium hirsutum HOM05D004238 ORTHO05D004934 5.5e-128 461.8 398 60.1
Thecc.04G129000 Theobroma cacao HOM05D004238 ORTHO05D004934 9.4e-128 461.1 404 59.2
Gohir.A11G165600 Gossypium hirsutum HOM05D004238 ORTHO05D004934 3.0e-126 456.1 398 59.5
COL.COLO4_09370 Corchorus olitorius HOM05D004238 ORTHO05D004934 1.7e-124 450.3 410 59.0
Cpa.g.sc170.33 Carica papaya HOM05D004238 ORTHO05D004934 3.8e-121 439.1 394 57.9
CsaV3_2G033830 Cucumis sativus L. HOM05D004238 ORTHO05D004934 1.9e-120 436.8 423 55.3
CANSAT78G0772 Cannabis sativa HOM05D004238 ORTHO05D004934 6.1e-119 431.8 417 54.9
DCAR_011370 Daucus carota HOM05D004238 ORTHO05D004934 6.1e-119 431.8 434 56.0
Sp3g16390 Schrenkiella parvula HOM05D004238 ORTHO05D004934 1.5e-117 427.2 371 61.2
Gohir.A07G066800 Gossypium hirsutum HOM05D004238 ORTHO05D004934 2.2e-116 423.3 280 76.1
Mapoly0058s0107 Marchantia polymorpha HOM05D004238 ORTHO05D004934 2.2e-116 423.3 376 59.0
ClCG11G007750 Citrullus lanatus HOM05D004238 ORTHO05D004934 4.8e-116 422.2 420 53.8
HPP92_008863 Vanilla planifolia HOM05D004238 ORTHO05D004934 1.6e-114 417.2 349 64.2
SMO146G0383 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 5.0e-113 412.1 347 59.4
ECA233G1745 Erigeron canadensis HOM05D004238 ORTHO05D004934 6.5e-113 411.8 385 59.0
Zm00001eb335570 Zea mays HOM05D004238 ORTHO05D004934 2.5e-112 409.8 277 74.7
Pp3c2_34370 Physcomitrium patens HOM05D004238 ORTHO05D004934 1.2e-111 407.5 391 54.5
DCAR_011367 Daucus carota HOM05D004238 ORTHO05D004934 4.7e-111 405.6 374 56.4
Zm00001eb124820 Zea mays HOM05D004238 ORTHO05D004934 6.7e-110 401.7 270 74.1
Eucgr.B00826 Eucalyptus grandis HOM05D004238 ORTHO05D004934 2.8e-108 396.4 382 58.4
DCAR_011366 Daucus carota HOM05D004238 ORTHO05D004934 1.3e-105 387.5 372 56.7
SMO146G0146 Selaginella moellendorffii HOM05D004238 ORTHO05D004934 8.9e-94 348.2 367 52.3
DCAR_000177 Daucus carota HOM05D004238 ORTHO05D004934 1.1e-88 331.3 238 70.2
CARHR093620 Cardamine hirsuta HOM05D004238 ORTHO05D004934 2.5e-88 330.1 240 66.7
Potri.015G044400 Populus trichocarpa HOM05D004238 ORTHO05D004934 3.6e-87 326.2 316 58.2
Nn2g15201 Nelumbo nucifera HOM05D004238 ORTHO05D004934 8.9e-78 295.0 202 76.7
PRCOL_00000826 Prasinoderma coloniale HOM05D004238 ORTHO05D004934 8.4e-60 235.3 341 41.9
DCAR_011376 Daucus carota HOM05D004238 ORTHO05D004934 4.2e-59 233.0 182 62.6
TAR371G0419 Trochodendron aralioides HOM05D004238 ORTHO05D004934 4.6e-58 229.6 170 71.2
Duzib205G0622 Durio zibethinus HOM05D004238 ORTHO05D004934 4.9e-52 209.5 200 58.0
Psat5g132800 Pisum sativum HOM05D004238 ORTHO05D004934 2.2e-44 184.1 118 76.3
Sabra15G0040700 Salix brachista HOM05D004238 ORTHO05D004934 1.2e-42 178.3 170 54.7
Psat0s2250g0040 Pisum sativum HOM05D005720 ORTHO05D006984 3.5e-42 176.8 163 59.5
Lalb_Chr00c06g0404671 Lupinus albus HOM05D004238 ORTHO05D004934 1.6e-39 167.9 123 71.5
arahy.Tifrunner.gnm1.ann1.78LW43 Arachis hypogaea HOM05D004238 ORTHO05D004934 4.0e-38 163.3 132 66.7
arahy.Tifrunner.gnm1.ann1.8NU3PL Arachis hypogaea HOM05D004238 ORTHO05D004934 6.9e-38 162.5 132 65.9
TPR.G26740 Trifolium pratense HOM05D004238 ORTHO05D004934 6.9e-38 162.5 124 69.4
DCAR_000092 Daucus carota HOM05D004238 ORTHO05D004934 9.0e-38 162.2 111 71.2
AagrBONN_evm.TU.Sc2ySwM_117.3507 Anthoceros agrestis HOM05D004238 ORTHO05D004934 1.2e-37 161.8 136 58.8
MELO3C008155.2 Cucumis melo HOM05D004238 ORTHO05D004934 1.5e-37 161.4 214 45.3
Atru.chr12.656 Acer truncatum HOM05D004238 ORTHO05D004934 7.6e-37 159.1 116 69.0
Atru.chr12.683 Acer truncatum HOM05D004238 ORTHO05D004934 6.4e-36 156.0 112 68.8
Sed0014968 Sechium edule HOM05D004238 ORTHO05D004934 9.3e-35 152.1 130 60.8
arahy.Tifrunner.gnm1.ann1.K93WBA Arachis hypogaea HOM05D004238 ORTHO05D004934 1.5e-32 144.8 120 65.8
C05p38610 Brassica napus HOM05D004238 ORTHO05D004934 1.3e-28 131.7 104 66.3
C08p35620 Brassica napus HOM05D004238 ORTHO05D004934 4.6e-26 123.2 91 67.0
Nn4g22334 Nelumbo nucifera HOM05D004238 ORTHO05D004934 7.4e-24 115.9 73 82.2
Pp3s30_70 Physcomitrium patens HOM05D004238 ORTHO05D004934 3.7e-23 113.6 339 27.1
BolC5t32601H Brassica oleracea HOM05D004238 ORTHO05D004934 4.8e-23 113.2 91 63.7
Psat0s1333g0160 Pisum sativum HOM05D004238 ORTHO05D004934 1.2e-21 108.6 79 69.6
Pp3s30_460 Physcomitrium patens HOM05D019034 ORTHO05D004934 2.6e-21 107.5 334 26.3
arahy.Tifrunner.gnm1.ann1.QA2PAR Arachis hypogaea HOM05D004238 ORTHO05D004934 8.5e-20 102.4 71 70.4
BcaC08g44328 Brassica carinata HOM05D004238 ORTHO05D004934 1.1e-19 102.1 75 65.3
C06p17530 Brassica napus HOM05D004238 ORTHO05D004934 1.1e-19 102.1 75 65.3
SEGI_36538 Sequoiadendron giganteum HOM05D004238 ORTHO05D004934 2.5e-19 100.9 109 51.4
Nn4g22335 Nelumbo nucifera HOM05D004238 ORTHO05D004934 5.5e-19 99.8 63 81.0
BcaC05g27863 Brassica carinata HOM05D002270 ORTHO05D002866 6.1e-18 96.3 91 58.2
Zm00001eb084840 Zea mays HOM05D004238 ORTHO05D004934 2.3e-17 94.4 73 64.4
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 9.7e-16 89.0 57 71.9
Dinv00811 Davidia involucrata HOM05D004238 ORTHO05D004934 3.7e-15 87.0 141 40.4
BcaC04g23227 Brassica carinata HOM05D004238 ORTHO05D004934 1.4e-14 85.1 62 66.1
BcaC08g45100 Brassica carinata HOM05D004238 ORTHO05D004934 1.4e-14 85.1 62 66.1
BolC6t37880H Brassica oleracea HOM05D004238 ORTHO05D004934 1.4e-14 85.1 62 66.1
BolC9t53984H Brassica oleracea HOM05D004238 ORTHO05D004934 1.4e-14 85.1 62 66.1
Atru.chr12.682 Acer truncatum HOM05D004238 ORTHO05D004934 9.1e-14 82.4 64 67.2
BcaC06g36376 Brassica carinata HOM05D004238 ORTHO05D004934 9.1e-14 82.4 62 66.1
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 1.2e-13 82.0 58 69.0
Solyc08g045760.1 Solanum lycopersicum HOM05D004238 ORTHO05D004934 5.9e-13 79.7 62 62.9
TAR374G1013 Trochodendron aralioides HOM05D001418 ORTHO05D002038 7.7e-13 79.3 72 56.9
Zm00001eb312660 Zea mays HOM05D004238 ORTHO05D004934 3.8e-12 77.0 105 47.6
VMungo1127G1492 Vigna mungo HOM05D000769 ORTHO05D000598 1.9e-11 74.7 71 56.3
BolC6t36947H Brassica oleracea HOM05D004238 ORTHO05D004934 1.2e-10 72.0 58 60.3
MSTRG.795 Avicennia marina HOM05D003438 ORTHO05D004235 1.0e-09 68.9 394 23.4
unitig_699.g19901 Utricularia gibba HOM05D003438 ORTHO05D004235 1.4e-09 68.6 413 24.9
Pp3c9_10620 Physcomitrium patens HOM05D003438 ORTHO05D004235 6.7e-09 66.2 341 26.7
Lj3C1025G4 Lonicera japonica HOM05D003438 ORTHO05D004235 4.4e-08 63.5 238 27.3
CiPaw.05G119100 Carya illinoinensis HOM05D003438 ORTHO05D004235 7.4e-08 62.8 380 25.0
Phvul.005G022900 Phaseolus vulgaris HOM05D003438 ORTHO05D004235 9.7e-08 62.4 282 24.8
Sed0018972 Sechium edule HOM05D003438 ORTHO05D004235 1.7e-07 61.6 250 25.6
Dinv16582 Davidia involucrata HOM05D003438 ORTHO05D004235 3.7e-07 60.5 248 25.4
VMungo1080G0632 Vigna mungo HOM05D003438 ORTHO05D004235 3.7e-07 60.5 260 25.4
CANSAT64G0670 Cannabis sativa HOM05D003438 ORTHO05D004235 1.8e-06 58.2 342 24.6
Glyma.15G276800 Glycine max HOM05D003438 ORTHO05D004235 3.1e-06 57.4 333 24.6
arahy.Tifrunner.gnm1.ann1.NZ4Q1A Arachis hypogaea HOM05D000129 ORTHO05D014893 4.1e-06 57.0 44 63.6
Cc11_g11300 Coffea canephora HOM05D003438 ORTHO05D004235 4.1e-06 57.0 267 25.1
MELO3C012178.2 Cucumis melo HOM05D003438 ORTHO05D004235 4.1e-06 57.0 395 23.3
Psat4g113520 Pisum sativum HOM05D003438 ORTHO05D004235 4.1e-06 57.0 222 27.5
arahy.Tifrunner.gnm1.ann1.583R3C Arachis hypogaea HOM05D004238 ORTHO05D014893 9.1e-06 55.8 42 66.7
SalBow8G3833 Salvia bowleyana HOM05D003438 ORTHO05D004235 9.1e-06 55.8 378 23.8


User provided reference genes

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