Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.9e-127 459.1 229 100.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 9.6e-119 430.3 226 94.2
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 1.9e-74 283.1 157 83.4
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.6e-73 278.9 155 82.6
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 4.7e-73 278.5 203 70.9
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 4.7e-73 278.5 234 65.0
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 1.0e-72 277.3 154 82.5
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.3e-72 276.2 198 70.2
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 3.9e-72 275.4 197 70.1
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.2e-72 275.0 188 69.7
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 6.7e-72 274.6 225 65.3
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 2.0e-71 273.1 222 64.4
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 2.6e-71 272.7 225 62.7
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 5.7e-71 271.6 155 79.4
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 5.7e-71 271.6 203 67.0
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 7.4e-71 271.2 234 63.2
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 9.7e-71 270.8 231 63.2
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 1.7e-70 270.0 223 64.1
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 1.7e-70 270.0 218 64.7
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 2.2e-70 269.6 209 67.9
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.8e-70 269.2 223 64.1
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 6.3e-70 268.1 152 80.9
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 6.3e-70 268.1 203 68.0
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 6.3e-70 268.1 185 70.3
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 8.2e-70 267.7 188 69.7
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 8.2e-70 267.7 240 61.2
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.1e-69 267.3 153 80.4
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.8e-69 266.5 159 75.5
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 3.1e-69 265.8 204 66.2
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 3.1e-69 265.8 205 67.3
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 5.3e-69 265.0 157 79.6
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 7.0e-69 264.6 221 63.3
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 9.1e-69 264.2 230 57.8
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 1.6e-68 263.5 199 68.8
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.6e-68 263.5 152 78.3
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 1.6e-68 263.5 153 81.0
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.7e-68 261.2 231 59.3
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.3e-67 260.4 203 65.0
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 5.0e-67 258.5 230 60.0
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 6.5e-67 258.1 213 62.0
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-66 257.3 213 62.4
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-66 257.3 213 62.0
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-66 257.3 145 80.0
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.9e-66 256.5 230 60.0
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 5.5e-66 255.0 225 61.3
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 7.2e-66 254.6 151 78.8
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 7.2e-66 254.6 225 61.3
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 1.6e-65 253.4 153 75.2
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 2.1e-65 253.1 214 61.7
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 2.7e-65 252.7 173 67.6
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 4.7e-65 251.9 161 73.3
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 4.7e-65 251.9 148 77.0
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 8.0e-65 251.1 225 60.0
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 8.0e-65 251.1 206 61.2
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 8.8e-64 247.7 227 58.1
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 5.7e-63 245.0 220 60.0
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.3e-62 243.8 155 69.7
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.2e-62 243.0 216 57.9
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 6.3e-62 241.5 153 73.2
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 1.4e-61 240.4 139 79.1
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 3.1e-61 239.2 256 52.0
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 7.0e-61 238.0 158 70.3
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 9.1e-61 237.7 222 57.7
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.6e-60 236.9 151 70.9
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.6e-60 236.9 202 62.4
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 1.6e-60 236.9 193 62.7
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 2.0e-60 236.5 151 70.9
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.7e-60 236.1 186 62.9
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.7e-60 236.1 151 70.2
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 7.7e-60 234.6 161 68.9
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.0e-59 234.2 151 70.2
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 1.3e-59 233.8 164 66.5
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 2.2e-59 233.0 140 77.1
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 2.9e-59 232.6 200 59.5
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 5.0e-59 231.9 225 54.2
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 8.5e-59 231.1 142 73.9
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 1.5e-58 230.3 182 65.4
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.5e-58 229.6 229 58.5
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 4.2e-58 228.8 208 62.0
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 5.5e-58 228.4 178 65.7
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 5.5e-58 228.4 226 53.5
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 7.2e-58 228.0 178 65.2
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 9.4e-58 227.6 262 51.1
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.0e-56 224.2 187 58.8
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 4.0e-56 222.2 193 56.5
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 8.8e-56 221.1 131 77.9
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.2e-55 220.7 159 62.3
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 1.5e-55 220.3 198 55.6
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 7.5e-55 218.0 159 62.9
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 9.8e-55 217.6 159 62.9
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 1.3e-54 217.2 214 55.1
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 3.7e-54 215.7 159 61.6
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 3.7e-54 215.7 207 56.5
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 6.3e-54 214.9 171 62.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 8.3e-54 214.5 188 59.0
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 8.3e-54 214.5 162 66.7
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.4e-53 213.8 162 60.5
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 1.4e-53 213.8 202 54.5
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 3.5e-52 209.1 179 59.2
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 4.5e-52 208.8 184 58.2
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.7e-52 208.0 150 67.3
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 2.3e-51 206.5 159 60.4
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 1.5e-50 203.8 179 60.9
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 4.2e-50 202.2 197 53.8
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 9.5e-50 201.1 151 57.6
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 1.2e-49 200.7 161 59.0
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 1.2e-49 200.7 148 58.8
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 3.6e-49 199.1 129 68.2
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 3.6e-49 199.1 151 57.6
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 3.6e-49 199.1 151 57.0
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 6.1e-49 198.4 167 56.9
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 6.1e-49 198.4 250 47.2
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 1.8e-48 196.8 163 59.5
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 3.0e-48 196.1 223 45.3
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 3.0e-48 196.1 144 60.4
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 6.8e-48 194.9 138 64.5
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 5.7e-47 191.8 213 47.9
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.3e-46 190.7 179 50.3
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.9e-46 188.7 145 56.6
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 6.3e-46 188.3 146 56.8
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.4e-45 187.2 167 50.9
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 2.7e-44 183.0 145 54.5
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 2.7e-44 183.0 145 54.5
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.7e-44 183.0 166 59.6
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 3.5e-44 182.6 111 73.9
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-43 181.0 167 49.1
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 1.0e-43 181.0 167 49.1
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 1.3e-43 180.6 184 56.0
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-43 180.3 167 49.1
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 3.9e-43 179.1 145 53.1
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 3.9e-43 179.1 145 53.1
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 8.6e-43 177.9 144 53.5
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 6.1e-41 171.8 142 64.8
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 1.8e-40 170.2 136 55.9
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 2.0e-39 166.8 239 46.4
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 7.5e-39 164.9 128 64.1
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 2.2e-38 163.3 145 44.8
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 6.4e-38 161.8 228 47.8
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.1e-37 161.0 102 72.5
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 7.0e-37 158.3 121 54.5
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 1.2e-36 157.5 102 70.6
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 5.0e-35 152.1 201 48.8
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 8.6e-35 151.4 128 57.8
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 2.5e-34 149.8 119 53.8
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 1.1e-32 144.4 195 48.2
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 8.9e-32 141.4 148 54.7
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 2.9e-30 136.3 202 36.1
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.9e-30 136.3 140 55.0
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.9e-30 136.3 134 56.0
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 1.9e-29 133.7 148 51.4
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 9.2e-29 131.3 141 41.8
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 1.9e-26 123.6 64 84.4
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 5.6e-26 122.1 144 45.8
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.8e-24 117.1 226 37.2
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 1.5e-23 114.0 172 43.6
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 2.6e-23 113.2 152 38.8
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 7.6e-23 111.7 86 57.0
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 8.3e-22 108.2 146 47.9
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 8.3e-22 108.2 65 75.4
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 6.6e-19 98.6 57 82.5
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 2.4e-16 90.1 92 54.3
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 1.9e-13 80.5 87 47.1
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.6e-12 75.9 113 42.5
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 3.0e-11 73.2 100 45.0
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 4.8e-09 65.9 53 52.8
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-08 63.9 51 52.9
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.8e-08 63.9 51 52.9
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 5.3e-08 62.4 94 40.4
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.9e-06 56.6 58 56.9
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.9e-06 56.6 58 56.9


User provided reference genes

Program Settings