Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1222 Punica granatum HOM05D004943 ORTHO05D005953 2.9e-114 415.2 207 100.0
Eucgr.F02035 Eucalyptus grandis HOM05D004943 ORTHO05D005953 9.3e-89 330.5 205 78.0
MD03G1030300 Malus domestica HOM05D004943 ORTHO05D005953 5.7e-86 321.2 205 79.0
MD11G1035300 Malus domestica HOM05D004943 ORTHO05D005953 5.7e-86 321.2 205 78.5
QL08p003376 Quercus lobata HOM05D004943 ORTHO05D005953 2.2e-85 319.3 204 78.4
CiPaw.12G139900 Carya illinoinensis HOM05D004943 ORTHO05D005953 4.8e-85 318.2 205 77.1
CiPaw.11G205900 Carya illinoinensis HOM05D004943 ORTHO05D005953 8.2e-85 317.4 205 77.1
Atru.chr2.3743 Acer truncatum HOM05D004943 ORTHO05D005953 1.1e-84 317.0 205 78.5
Cfa016921 Carpinus fangiana HOM05D004943 ORTHO05D005953 2.4e-84 315.8 205 78.5
FvH4_3g42640 Fragaria vesca HOM05D004943 ORTHO05D005953 1.2e-83 313.5 205 78.0
FAN11G3459 Fragaria x ananassa HOM05D004943 ORTHO05D005953 1.2e-83 313.5 205 78.0
Prupe.6G026500 Prunus persica HOM05D004943 ORTHO05D005953 2.6e-83 312.4 205 76.1
Gohir.A04G005400 Gossypium hirsutum HOM05D004943 ORTHO05D005953 7.7e-83 310.8 207 75.8
Gorai.009G451100 Gossypium raimondii HOM05D004943 ORTHO05D005953 1.0e-82 310.5 207 75.8
Glyma.14G012300 Glycine max HOM05D004943 ORTHO05D005953 1.3e-82 310.1 203 75.9
FAN21G2115 Fragaria x ananassa HOM05D004943 ORTHO05D005953 2.2e-82 309.3 205 77.1
Hma1.2p1_0023F.1_g015770 Hydrangea macrophylla HOM05D004943 ORTHO05D005953 2.2e-82 309.3 203 75.9
Lj3g0015751 Lotus japonicus HOM05D004943 ORTHO05D005953 2.2e-82 309.3 203 77.8
RcHm_v2.0_Chr5g0076271 Rosa chinensis HOM05D004943 ORTHO05D005953 2.2e-82 309.3 205 77.1
Dinv32219 Davidia involucrata HOM05D004943 ORTHO05D005953 3.8e-82 308.5 205 74.6
VMungo0647G1317 Vigna mungo HOM05D004943 ORTHO05D005953 3.8e-82 308.5 203 76.8
Glyma.02G301900 Glycine max HOM05D004943 ORTHO05D005953 5.0e-82 308.1 203 75.4
Phvul.008G280500 Phaseolus vulgaris HOM05D004943 ORTHO05D005953 6.5e-82 307.8 203 76.8
Gohir.D05G384300 Gossypium hirsutum HOM05D004943 ORTHO05D005953 8.5e-82 307.4 207 74.9
TWI75G0785 Tripterygium wilfordii HOM05D004943 ORTHO05D005953 1.1e-81 307.0 207 73.4
CsaV3_4G029170 Cucumis sativus L. HOM05D004943 ORTHO05D005953 1.9e-81 306.2 203 74.4
MELO3C019145.2 Cucumis melo HOM05D004943 ORTHO05D005953 2.5e-81 305.8 203 74.4
ClCG04G005970 Citrullus lanatus HOM05D004943 ORTHO05D005953 3.2e-81 305.4 203 74.4
LjContig00081g0027973 Lotus japonicus HOM05D004943 ORTHO05D005953 5.5e-81 304.7 203 76.8
Dinv21530 Davidia involucrata HOM05D004943 ORTHO05D005953 7.2e-81 304.3 205 73.2
COL.COLO4_07727 Corchorus olitorius HOM05D004943 ORTHO05D005953 1.6e-80 303.1 207 72.9
Haze_09852 Corylus avellana HOM05D004943 ORTHO05D005953 3.6e-80 302.0 227 70.5
CSS0046003 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 4.7e-80 301.6 203 72.4
Potri.001G370200 Populus trichocarpa HOM05D004943 ORTHO05D005953 4.7e-80 301.6 205 74.1
Medtr5g096260 Medicago truncatula HOM05D004943 ORTHO05D005953 7.9e-80 300.8 203 74.4
Thecc.07G009400 Theobroma cacao HOM05D004943 ORTHO05D005953 7.9e-80 300.8 207 73.4
Duzib170G0808 Durio zibethinus HOM05D004943 ORTHO05D005953 1.0e-79 300.4 207 71.5
Actinidia35413 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.4e-79 300.1 205 73.2
Manes.15G058100 Manihot esculenta HOM05D004943 ORTHO05D005953 1.8e-79 299.7 205 71.7
THA.LOC104813453 Tarenaya hassleriana HOM05D004943 ORTHO05D005953 1.8e-79 299.7 205 73.2
GSVIVG01014728001 Vitis vinifera HOM05D004943 ORTHO05D005953 1.8e-79 299.7 206 72.3
Ca_06409_v3 Cicer arietinum L. HOM05D004943 ORTHO05D005953 3.9e-79 298.5 203 74.9
Ciclev10009430m.g Citrus clementina HOM05D004943 ORTHO05D005953 3.9e-79 298.5 197 76.6
C03p16160 Brassica napus HOM05D004943 ORTHO05D005953 5.1e-79 298.1 205 72.2
BolC3t14040H Brassica oleracea HOM05D004943 ORTHO05D005953 5.1e-79 298.1 205 72.2
Lj1C893G4 Lonicera japonica HOM05D004943 ORTHO05D005953 5.1e-79 298.1 205 73.2
Sed0027327 Sechium edule HOM05D004943 ORTHO05D005953 5.1e-79 298.1 203 73.9
A03p13760 Brassica napus HOM05D004943 ORTHO05D005953 8.8e-79 297.4 205 71.2
Duzib213G0469 Durio zibethinus HOM05D004943 ORTHO05D005953 8.8e-79 297.4 207 72.5
Potri.001G370000 Populus trichocarpa HOM05D004943 ORTHO05D005953 8.8e-79 297.4 205 73.2
arahy.Tifrunner.gnm1.ann1.5RSY3J Arachis hypogaea HOM05D004943 ORTHO05D005953 2.0e-78 296.2 203 72.9
arahy.Tifrunner.gnm1.ann1.7JU3J0 Arachis hypogaea HOM05D004943 ORTHO05D005953 2.0e-78 296.2 203 72.9
Carub.0008s1627 Capsella rubella HOM05D004943 ORTHO05D005953 2.0e-78 296.2 205 72.2
BraA03t10679Z Brassica rapa HOM05D004943 ORTHO05D005953 2.6e-78 295.8 205 71.2
vmacro09630 Vaccinium macrocarpon HOM05D004943 ORTHO05D005953 2.6e-78 295.8 204 72.5
AT5G55940 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 3.3e-78 295.4 205 72.2
Lalb_Chr13g0300511 Lupinus albus HOM05D004943 ORTHO05D005953 3.3e-78 295.4 203 73.4
Thhalv10014684m.g Eutrema salsugineum HOM05D004943 ORTHO05D005953 4.4e-78 295.0 205 72.2
C02p15720 Brassica napus HOM05D004943 ORTHO05D005953 7.4e-78 294.3 205 71.2
Actinidia37138 Actinidia chinensis HOM05D004943 ORTHO05D005953 9.7e-78 293.9 205 71.2
BcaB05g22236 Brassica carinata HOM05D004943 ORTHO05D005953 1.3e-77 293.5 205 70.2
Sp6g17790 Schrenkiella parvula HOM05D004943 ORTHO05D005953 1.3e-77 293.5 205 71.7
Aa31LG5G11950 Aethionema arabicum HOM05D004943 ORTHO05D005953 1.7e-77 293.1 205 71.7
PGSC0003DMG400024208 Solanum tuberosum HOM05D004943 ORTHO05D005953 3.7e-77 292.0 206 71.4
BraA10t43408Z Brassica rapa HOM05D004943 ORTHO05D005953 6.3e-77 291.2 205 71.2
Nitab4.5_0000366g0060 Nicotiana tabacum HOM05D004943 ORTHO05D005953 6.3e-77 291.2 206 71.8
Psat2g006640 Pisum sativum HOM05D004943 ORTHO05D005953 6.3e-77 291.2 203 71.9
Solyc07g009160.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 6.3e-77 291.2 206 70.9
BolC2t07679H Brassica oleracea HOM05D004943 ORTHO05D005953 8.2e-77 290.8 205 70.7
Nn3g19397 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.1e-76 290.4 205 69.3
MSTRG.15804 Avicennia marina HOM05D004943 ORTHO05D005953 1.4e-76 290.0 205 71.7
A02p09420 Brassica napus HOM05D004943 ORTHO05D005953 1.4e-76 290.0 205 69.3
BraA02t06006Z Brassica rapa HOM05D004943 ORTHO05D005953 1.4e-76 290.0 205 69.3
BcaC04g20187 Brassica carinata HOM05D004943 ORTHO05D005953 1.8e-76 289.7 205 70.7
A10p13120 Brassica napus HOM05D004943 ORTHO05D005953 1.8e-76 289.7 205 70.7
C09p46880 Brassica napus HOM05D004943 ORTHO05D005953 1.8e-76 289.7 205 70.7
CARHR269310 Cardamine hirsuta HOM05D004943 ORTHO05D005953 1.8e-76 289.7 205 70.2
TPR.G36515 Trifolium pratense HOM05D004943 ORTHO05D005953 1.8e-76 289.7 203 72.4
Oeu039419.1 Olea europaea HOM05D004943 ORTHO05D005953 2.4e-76 289.3 206 69.9
Sopen07g017150 Solanum pennellii HOM05D004943 ORTHO05D005953 4.1e-76 288.5 206 70.4
BolC9t57538H Brassica oleracea HOM05D004943 ORTHO05D005953 6.9e-76 287.7 205 70.2
PGSC0003DMG400008685 Solanum tuberosum HOM05D004943 ORTHO05D005953 6.9e-76 287.7 206 70.4
BcaB08g35959 Brassica carinata HOM05D004943 ORTHO05D005953 1.5e-75 286.6 205 70.2
Solyc10g005780.3 Solanum lycopersicum HOM05D004943 ORTHO05D005953 3.4e-75 285.4 206 69.9
TAR375G0957 Trochodendron aralioides HOM05D004943 ORTHO05D005953 4.5e-75 285.0 205 69.3
Sopen10g001750 Solanum pennellii HOM05D004943 ORTHO05D005953 5.9e-75 284.6 206 69.4
HanXRQChr04g0114541 Helianthus annuus HOM05D004943 ORTHO05D005953 7.7e-75 284.3 204 71.6
Cc05_g15200 Coffea canephora HOM05D004943 ORTHO05D005953 1.3e-74 283.5 205 70.2
Aa31LG3G11850 Aethionema arabicum HOM05D004943 ORTHO05D005953 2.9e-74 282.3 213 67.6
Lalb_Chr07g0180111 Lupinus albus HOM05D004943 ORTHO05D005953 5.0e-74 281.6 203 70.9
CAN.G160.52 Capsicum annuum HOM05D004943 ORTHO05D005953 6.5e-74 281.2 206 69.4
Migut.H01743 Erythranthe guttata HOM05D004943 ORTHO05D005953 8.5e-74 280.8 201 71.1
Peaxi162Scf00324g00322 Petunia axillaris HOM05D004943 ORTHO05D005953 8.5e-74 280.8 206 70.4
RcHm_v2.0_Chr5g0076591 Rosa chinensis HOM05D004943 ORTHO05D005953 1.1e-73 280.4 205 72.7
unitig_746.g26710 Utricularia gibba HOM05D004943 ORTHO05D005953 1.1e-73 280.4 200 70.0
MBI12_g14493_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 2.5e-73 279.3 203 67.5
Sabra16G0243100 Salix brachista HOM05D004943 ORTHO05D005953 3.2e-73 278.9 258 59.3
SGA_v2.0_scaffold42G15954 Striga asiatica HOM05D004943 ORTHO05D005953 3.2e-73 278.9 205 71.2
Aqoxy1G01190 Aquilegia oxysepala HOM05D004943 ORTHO05D005953 2.1e-72 276.2 205 65.9
ECA236G2729 Erigeron canadensis HOM05D004943 ORTHO05D005953 2.1e-72 276.2 204 70.1
HanXRQChr11g0334381 Helianthus annuus HOM05D004943 ORTHO05D005953 1.0e-71 273.9 203 69.0
PSO541G3156 Papaver somniferum HOM05D004943 ORTHO05D005953 1.0e-71 273.9 205 65.4
MSTRG.7011 Avicennia marina HOM05D004943 ORTHO05D005953 1.8e-71 273.1 205 69.3
Sc13g0002830 Simmondsia chinensis HOM05D004943 ORTHO05D005953 1.8e-71 273.1 209 67.5
HPP92_001543 Vanilla planifolia HOM05D004943 ORTHO05D005953 5.2e-71 271.6 209 63.2
PSO675G6228 Papaver somniferum HOM05D004943 ORTHO05D005953 6.7e-71 271.2 205 64.9
Oeu046942.1 Olea europaea HOM05D004943 ORTHO05D005953 3.3e-70 268.9 195 69.2
Rhsim04G0011100 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.8e-69 265.0 203 67.5
EL10Ac2g04777 Beta vulgaris HOM05D004943 ORTHO05D005953 6.3e-69 264.6 207 63.3
Lsat_1_v5_gn_5_190221 Lactuca sativa HOM05D004943 ORTHO05D005953 9.1e-68 260.8 208 63.9
CSS0011268 Camellia sinensis var. sinensis HOM05D004943 ORTHO05D005953 1.6e-67 260.0 203 65.5
AUR62022831 Chenopodium quinoa HOM05D004943 ORTHO05D005953 7.7e-67 257.7 207 62.8
AUR62012198 Chenopodium quinoa HOM05D004943 ORTHO05D005953 1.0e-66 257.3 207 62.3
TAR374G0816 Trochodendron aralioides HOM05D004943 ORTHO05D005953 8.5e-66 254.2 205 63.4
ATR0680G115 Amborella trichopoda HOM05D004943 ORTHO05D005953 2.5e-65 252.7 201 60.2
Os04g0270200 Oryza sativa ssp. japonica HOM05D004943 ORTHO05D005953 2.5e-65 252.7 207 59.4
SEGI_32834 Sequoiadendron giganteum HOM05D004943 ORTHO05D005953 3.2e-65 252.3 209 61.7
Ah.16g103050 Amaranthus hybridus HOM05D000612 ORTHO05D000461 3.7e-61 238.8 198 61.1
Zm00001eb086910 Zea mays HOM05D004943 ORTHO05D005953 1.4e-60 236.9 208 57.2
MD01G1008800 Malus domestica HOM05D004943 ORTHO05D005953 9.8e-54 214.2 145 75.9
SMO367G0477 Selaginella moellendorffii HOM05D004943 ORTHO05D005953 1.7e-53 213.4 211 52.1
Mapoly0118s0025 Marchantia polymorpha HOM05D004943 ORTHO05D005953 1.4e-52 210.3 215 49.8
FAN25G1833 Fragaria x ananassa HOM05D004943 ORTHO05D005953 3.1e-52 209.1 138 78.3
Pp3c17_17770 Physcomitrium patens HOM05D004943 ORTHO05D005953 3.1e-52 209.1 205 51.2
Cpa.g.sc12.130 Carica papaya HOM05D004943 ORTHO05D005953 2.9e-50 202.6 135 74.8
Actinidia04992 Actinidia chinensis HOM05D004943 ORTHO05D005953 1.9e-49 199.9 142 72.5
DCAR_013248 Daucus carota HOM05D004943 ORTHO05D005953 5.5e-49 198.4 205 55.1
Nitab4.5_0007635g0010 Nicotiana tabacum HOM05D004943 ORTHO05D005953 4.7e-48 195.3 141 70.9
FAN16G1336 Fragaria x ananassa HOM05D004943 ORTHO05D005953 7.5e-46 188.0 147 71.4
AagrBONN_evm.TU.Sc2ySwM_117.1155 Anthoceros agrestis HOM05D004943 ORTHO05D005953 5.9e-43 178.3 202 46.0
MBI12_g46257_MAGBIO Magnolia biondii HOM05D004943 ORTHO05D005953 1.9e-41 173.3 132 63.6
Ah.10g036690 Amaranthus hybridus HOM05D000612 ORTHO05D000461 1.4e-36 157.1 130 60.8
Nitab4.5_0005478g0050 Nicotiana tabacum HOM05D004943 ORTHO05D005953 3.9e-34 149.1 185 48.6
Cre05.g240550 Chlamydomonas reinhardtii HOM05D004943 ORTHO05D005953 2.1e-27 126.7 196 36.2
PRCOL_00005958 Prasinoderma coloniale HOM05D004943 ORTHO05D005953 7.3e-25 118.2 195 36.9
CBR_g45852 Chara braunii HOM05D004943 ORTHO05D005953 9.5e-25 117.9 124 46.8
Atru.chr2.3756 Acer truncatum HOM05D004943 ORTHO05D005953 8.9e-23 111.3 101 59.4
Actinidia30384 Actinidia chinensis HOM05D004943 ORTHO05D005953 8.9e-23 111.3 137 48.2
TPR.G20059 Trifolium pratense HOM05D004943 ORTHO05D005953 2.0e-22 110.2 69 79.7
MCO09G115 Micromonas commoda HOM05D004943 ORTHO05D005953 3.7e-21 105.9 202 35.1
Nn1g00203 Nelumbo nucifera HOM05D004943 ORTHO05D005953 1.9e-20 103.6 68 73.5
Nn1g00202 Nelumbo nucifera HOM05D004943 ORTHO05D005953 2.4e-20 103.2 77 61.0
Atru.chr3.1978 Acer truncatum HOM05D004943 ORTHO05D005953 8.1e-16 88.2 63 69.8
Rhsim04G0226000 Rhododendron simsii HOM05D004943 ORTHO05D005953 4.4e-14 82.4 65 67.7
AT5G51620 Arabidopsis thaliana HOM05D004943 ORTHO05D005953 1.1e-12 77.8 51 72.5
Oeu005474.1 Olea europaea HOM05D004943 ORTHO05D288151 1.5e-09 67.4 72 56.9
Pp3c14_20520 Physcomitrium patens HOM05D004943 ORTHO05D005953 1.2e-08 64.3 120 33.3
Hund22175 Selenicereus undatus HOM05D004943 ORTHO05D005953 1.1e-07 61.2 44 61.4
Rhsim13G0193400 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.0e-07 58.2 46 65.2
Rhsim13G0193700 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.0e-07 58.2 46 65.2
CBR_g17083 Chara braunii HOM05D004943 ORTHO05D005953 1.5e-06 57.4 81 38.3
Carub.0005s1381 Capsella rubella HOM05D003949 ORTHO05D004504 9.9e-06 54.7 43 55.8
Rhsim13G0193100 Rhododendron simsii HOM05D004943 ORTHO05D005953 9.9e-06 54.7 33 78.8


User provided reference genes

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