Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 1.1e-66 256.5 133 100.0
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.4e-52 208.4 128 82.0
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 3.8e-51 204.9 128 82.0
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.8e-51 204.9 126 80.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 5.0e-51 204.5 128 81.2
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 5.0e-51 204.5 124 85.5
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 5.0e-51 204.5 128 78.9
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 5.0e-51 204.5 126 81.0
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 6.5e-51 204.1 128 81.2
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.5e-51 204.1 128 81.2
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 6.5e-51 204.1 128 81.2
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.1e-50 203.4 126 81.7
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 1.4e-50 203.0 128 81.2
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 2.5e-50 202.2 128 80.5
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.2e-50 201.8 126 80.2
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 3.2e-50 201.8 128 79.7
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 3.2e-50 201.8 128 78.9
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 3.2e-50 201.8 128 76.6
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 4.2e-50 201.4 128 78.9
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 4.2e-50 201.4 123 82.9
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 4.2e-50 201.4 126 81.0
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 4.2e-50 201.4 128 78.9
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 5.5e-50 201.1 126 79.4
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 5.5e-50 201.1 129 79.1
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 9.4e-50 200.3 128 78.9
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 1.2e-49 199.9 128 79.7
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.6e-49 199.5 128 78.1
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 2.7e-49 198.7 128 78.9
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 2.7e-49 198.7 128 79.7
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 3.6e-49 198.4 128 76.6
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 3.6e-49 198.4 128 75.0
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 4.7e-49 198.0 123 81.3
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 6.1e-49 197.6 132 76.5
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 6.1e-49 197.6 127 79.5
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 6.1e-49 197.6 127 79.5
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 7.9e-49 197.2 117 84.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.9e-49 197.2 126 78.6
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 7.9e-49 197.2 128 77.3
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.4e-48 196.4 118 82.2
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 1.4e-48 196.4 128 77.3
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.4e-48 196.4 128 76.6
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.4e-48 196.4 119 81.5
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 1.8e-48 196.1 118 84.7
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.8e-48 196.1 133 75.2
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 3.9e-48 194.9 122 79.5
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 3.9e-48 194.9 122 79.5
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 3.9e-48 194.9 122 79.5
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 3.9e-48 194.9 117 83.8
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 3.9e-48 194.9 122 80.3
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 3.9e-48 194.9 126 77.8
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 5.1e-48 194.5 122 78.7
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 5.1e-48 194.5 122 78.7
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 6.7e-48 194.1 128 75.8
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 8.8e-48 193.7 125 76.8
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.8e-48 193.7 126 77.8
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 8.8e-48 193.7 128 76.6
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.1e-47 193.4 123 78.0
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 1.1e-47 193.4 118 81.4
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.5e-47 193.0 128 76.6
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 2.0e-47 192.6 116 83.6
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.0e-47 192.6 117 81.2
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.6e-47 192.2 126 77.0
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 3.3e-47 191.8 122 77.9
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 3.3e-47 191.8 126 75.4
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 5.7e-47 191.0 123 78.9
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 7.4e-47 190.7 116 81.9
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 7.4e-47 190.7 123 78.0
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 7.4e-47 190.7 128 74.2
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-46 189.5 123 78.0
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 3.7e-46 188.3 118 79.7
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 3.7e-46 188.3 126 77.0
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 6.3e-46 187.6 118 78.8
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 8.2e-46 187.2 114 82.5
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.1e-45 186.8 124 75.8
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.1e-45 186.8 124 76.6
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 1.1e-45 186.8 123 74.0
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 1.1e-45 186.8 127 74.8
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 1.4e-45 186.4 117 77.8
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 1.4e-45 186.4 117 77.8
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.4e-45 186.4 124 76.6
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 1.8e-45 186.0 134 70.9
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.4e-45 185.7 115 79.1
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 3.1e-45 185.3 126 73.8
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 3.1e-45 185.3 123 75.6
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.1e-45 185.3 125 75.2
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 7.0e-45 184.1 126 75.4
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 7.0e-45 184.1 128 71.9
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 9.1e-45 183.7 115 78.3
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 1.2e-44 183.3 117 78.6
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 1.2e-44 183.3 117 76.9
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-44 182.6 123 74.8
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 2.6e-44 182.2 117 76.1
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 2.6e-44 182.2 110 81.8
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.5e-44 181.8 118 78.0
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 7.7e-44 180.6 117 76.9
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 7.7e-44 180.6 126 74.6
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 1.3e-43 179.9 115 79.1
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.9e-43 178.7 128 73.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 5.0e-43 177.9 108 84.3
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 6.5e-43 177.6 105 83.8
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.7e-41 171.4 117 73.5
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 8.0e-41 170.6 124 71.8
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 6.7e-40 167.5 123 65.9
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.1e-39 166.8 130 67.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 4.4e-39 164.9 99 85.9
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.3e-38 163.3 98 86.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 8.2e-38 160.6 110 74.5
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.8e-37 159.5 107 75.7
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.4e-37 159.1 117 69.2
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 4.1e-37 158.3 105 72.4
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 7.0e-37 157.5 117 71.8
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 9.1e-37 157.1 98 79.6
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 9.1e-37 157.1 98 79.6
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.2e-36 156.8 123 65.0
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 1.6e-36 156.4 117 68.4
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 2.6e-36 155.6 118 66.1
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.9e-35 152.1 90 81.1
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.1e-34 150.2 108 70.4
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.5e-34 149.8 98 76.5
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.5e-34 149.8 98 76.5
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.5e-34 149.1 93 80.6
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 4.2e-34 148.3 118 64.4
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 1.6e-33 146.4 126 64.3
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 8.8e-32 140.6 123 58.5
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 2.6e-31 139.0 97 73.2
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 3.4e-31 138.7 106 67.0
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 4.4e-31 138.3 119 61.3
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 7.5e-31 137.5 113 60.2
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.8e-30 135.6 86 77.9
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 3.1e-29 132.1 114 57.0
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 5.3e-29 131.3 120 54.2
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 5.3e-29 131.3 114 57.0
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 9.1e-29 130.6 113 55.8
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.7e-28 129.0 123 58.5
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 5.9e-28 127.9 88 70.5
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.0e-27 127.1 124 51.6
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 1.0e-27 127.1 86 73.3
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.3e-27 126.7 98 68.4
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.2e-27 125.9 119 57.1
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 6.5e-27 124.4 116 57.8
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.1e-26 123.6 118 51.7
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 1.9e-26 122.9 107 57.9
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.2e-26 122.1 84 76.2
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 4.2e-26 121.7 116 56.0
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.5e-26 121.3 123 51.2
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 9.4e-26 120.6 88 64.8
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 1.2e-25 120.2 77 71.4
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.6e-25 119.8 108 57.4
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 6.1e-25 117.9 88 71.6
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 5.2e-24 114.8 131 49.6
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.8e-22 109.0 76 80.3
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 3.1e-21 105.5 128 46.1
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 5.4e-21 104.8 61 85.2
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 4.0e-16 88.6 64 65.6
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 2.1e-09 66.2 75 49.3
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 1.4e-08 63.5 54 53.7
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 7.5e-07 57.8 63 52.4
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 4.9e-06 55.1 111 33.3
Sed0024624 Sechium edule HOM05D004009 ORTHO05D004617 6.4e-06 54.7 111 35.1
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 8.3e-06 54.3 111 33.3


User provided reference genes

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