Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 6.5e-268 926.8 459 100.0
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 4.6e-189 664.8 435 75.6
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 7.7e-184 647.5 410 75.4
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 9.4e-182 640.6 406 75.9
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.6e-181 639.8 391 77.7
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 1.8e-180 636.3 420 73.1
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 1.5e-179 633.3 403 76.2
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 1.5e-179 633.3 440 72.3
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 5.7e-179 631.3 399 76.4
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 7.4e-179 630.9 417 74.8
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 1.7e-178 629.8 433 72.5
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 4.8e-178 628.2 422 72.0
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 6.3e-178 627.9 431 71.2
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 1.8e-177 626.3 426 73.2
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 3.1e-177 625.5 422 72.0
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 5.3e-177 624.8 420 74.5
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 5.3e-177 624.8 430 71.4
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 9.1e-177 624.0 420 74.5
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 1.2e-176 623.6 436 72.7
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.2e-176 623.6 441 71.2
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 2.0e-176 622.9 436 71.1
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.6e-176 622.5 420 74.3
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 5.9e-176 621.3 434 72.8
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 7.7e-176 620.9 435 71.7
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 7.7e-176 620.9 408 73.5
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.7e-175 619.8 431 72.4
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 1.7e-175 619.8 394 76.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 2.9e-175 619.0 398 75.1
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.9e-175 619.0 436 72.5
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 6.5e-175 617.8 422 71.1
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 8.5e-175 617.5 399 76.2
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 8.5e-175 617.5 422 71.1
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.4e-174 616.7 391 76.5
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.4e-174 616.7 435 71.5
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.4e-174 616.7 400 75.5
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.4e-174 616.7 407 75.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.9e-174 616.3 400 74.5
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.9e-174 616.3 436 71.6
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 1.9e-174 616.3 432 71.3
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 3.2e-174 615.5 399 76.2
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 4.2e-174 615.1 400 75.0
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 2.7e-173 612.5 386 75.9
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.7e-173 611.7 434 71.2
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 6.1e-173 611.3 400 74.8
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 1.8e-172 609.8 431 69.8
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.8e-172 609.8 435 68.7
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 8.8e-172 607.4 400 74.0
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 1.1e-171 607.1 425 70.1
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.6e-171 605.9 448 69.4
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 2.6e-171 605.9 408 73.8
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 3.3e-171 605.5 427 70.3
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 4.4e-171 605.1 420 71.0
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 1.3e-170 603.6 399 72.9
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 1.3e-170 603.6 399 72.9
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.7e-170 603.2 431 69.4
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 2.8e-170 602.4 399 72.7
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 3.7e-170 602.1 438 70.1
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 4.8e-170 601.7 445 67.9
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 4.8e-170 601.7 399 72.7
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 6.3e-170 601.3 447 67.3
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 6.3e-170 601.3 448 67.9
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.1e-169 600.5 410 72.0
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 2.4e-169 599.4 402 72.6
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 9.1e-169 597.4 397 72.8
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 1.6e-168 596.7 402 72.4
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 2.6e-168 595.9 412 71.1
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 5.9e-168 594.7 407 71.0
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 6.5e-167 591.3 399 72.9
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 6.5e-167 591.3 402 70.6
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.5e-166 590.1 422 69.4
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 4.2e-166 588.6 385 72.2
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 2.1e-165 586.3 419 69.9
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.0e-164 583.9 438 67.4
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 2.3e-164 582.8 412 71.6
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 3.0e-164 582.4 412 71.4
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 3.3e-163 578.9 452 64.8
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 7.5e-163 577.8 437 66.6
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.7e-162 576.6 401 69.8
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 2.8e-162 575.9 398 71.4
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 2.8e-162 575.9 432 66.7
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.1e-161 573.9 435 68.0
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.4e-161 572.8 488 62.7
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 1.2e-160 570.5 391 71.9
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 1.6e-160 570.1 379 73.1
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 2.7e-160 569.3 461 62.9
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 4.5e-160 568.5 445 65.2
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.0e-159 567.4 388 70.6
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.2e-159 566.2 432 67.6
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 7.2e-158 561.2 405 68.1
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.0e-156 555.8 389 70.7
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 8.8e-156 554.3 386 70.5
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.8e-154 549.3 336 77.7
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 7.0e-153 544.7 391 68.8
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.5e-150 537.0 394 67.8
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 4.2e-150 535.4 412 65.3
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 8.8e-148 527.7 412 62.4
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 3.4e-147 525.8 358 69.0
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 4.4e-147 525.4 353 71.1
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 1.3e-146 523.9 332 76.2
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.2e-141 507.3 404 61.9
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 2.3e-140 503.1 368 67.9
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 7.5e-139 498.0 429 59.4
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.1e-137 494.2 390 62.8
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 1.8e-137 493.4 390 61.8
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 6.6e-135 485.0 356 65.7
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 7.3e-134 481.5 401 60.3
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 2.8e-133 479.6 302 76.2
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 3.6e-133 479.2 368 62.5
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 5.2e-132 475.3 333 69.7
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 1.3e-130 470.7 421 58.4
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.3e-126 455.7 319 67.1
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 6.2e-125 451.8 319 66.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.8e-124 450.3 319 66.5
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 1.1e-116 424.5 270 75.6
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 2.8e-109 399.8 282 69.9
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 1.1e-108 397.9 252 75.0
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.5e-102 377.5 332 53.9
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 3.3e-102 376.3 316 56.3
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.5e-94 350.9 398 45.7
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 6.9e-92 342.0 274 58.8
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.6e-88 329.3 198 75.8
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 5.9e-75 285.8 320 45.9
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 1.9e-73 280.8 204 67.6
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 5.5e-73 279.3 204 68.1
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 9.7e-70 268.5 179 71.5
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.1e-68 265.0 230 60.0
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 4.1e-68 263.1 242 51.7
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 4.2e-65 253.1 219 55.7
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 2.6e-54 217.2 142 73.9
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 2.8e-45 187.2 140 67.1
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.9e-42 177.2 125 62.4
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 9.4e-41 172.2 125 57.6
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 6.8e-39 166.0 140 52.9
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 2.7e-35 154.1 130 63.8
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 8.9e-31 139.0 156 53.8
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 9.8e-30 135.6 414 28.7
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 1.8e-28 131.3 123 56.1
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 9.2e-28 129.0 75 74.7
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 2.5e-25 120.9 258 32.2
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 2.6e-22 110.9 94 61.7
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 4.1e-20 103.6 63 71.4
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.9e-17 94.7 52 82.7
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 3.4e-14 84.0 58 65.5
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.1e-09 68.9 54 61.1
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 9.5e-09 65.9 78 46.2
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 9.5e-09 65.9 78 46.2


User provided reference genes

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