Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 1.2e-288 995.7 498 100.0
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.1e-231 804.7 483 82.6
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 9.1e-231 803.5 491 80.9
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 4.5e-230 801.2 503 79.5
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.1e-228 796.6 499 79.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 3.6e-227 791.6 495 79.0
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 1.4e-226 789.6 493 79.9
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.0e-226 788.5 483 81.0
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 2.6e-225 785.4 494 78.9
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 2.6e-225 785.4 484 80.0
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 3.3e-225 785.0 506 78.3
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.7e-225 784.3 497 79.3
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 5.7e-225 784.3 482 80.1
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 9.7e-225 783.5 485 79.8
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.7e-224 782.7 492 79.5
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-224 782.7 497 79.1
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.2e-224 782.3 477 80.3
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.2e-224 782.3 498 79.5
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 4.8e-224 781.2 497 79.3
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 1.1e-223 780.0 493 80.3
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.4e-223 778.9 488 78.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 3.1e-223 778.5 485 77.9
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 4.1e-223 778.1 493 77.5
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 2.6e-222 775.4 494 76.9
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 3.5e-222 775.0 489 77.1
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.5e-222 774.6 502 77.5
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 2.9e-221 771.9 485 79.0
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 3.8e-221 771.5 503 78.9
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 6.5e-221 770.8 474 79.3
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 6.5e-221 770.8 482 78.0
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.1e-220 770.0 484 78.1
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.5e-220 768.8 492 78.7
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.5e-220 768.8 497 76.1
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 2.5e-220 768.8 497 76.1
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 4.2e-220 768.1 484 78.3
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 4.2e-220 768.1 493 76.5
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 5.5e-220 767.7 491 76.8
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 5.5e-220 767.7 494 79.1
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 5.5e-220 767.7 494 79.1
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 7.2e-220 767.3 489 77.9
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 7.2e-220 767.3 489 77.9
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 9.4e-220 766.9 489 77.7
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 9.4e-220 766.9 496 78.6
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.2e-219 766.5 485 78.8
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 2.1e-219 765.8 484 77.7
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 2.1e-219 765.8 484 78.1
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-219 765.4 499 76.6
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.6e-219 765.0 484 78.3
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 3.6e-219 765.0 498 78.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 4.7e-219 764.6 501 75.0
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.4e-218 763.1 499 76.6
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-218 763.1 492 76.6
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 1.8e-218 762.7 490 77.6
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.3e-218 762.3 492 76.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 6.7e-218 760.8 478 78.7
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.5e-217 759.6 483 77.2
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.5e-217 759.6 497 76.1
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 2.0e-217 759.2 504 74.6
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.0e-217 759.2 481 77.5
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 2.6e-217 758.8 490 76.9
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 4.4e-217 758.1 484 77.3
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 4.4e-217 758.1 497 75.9
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 5.7e-217 757.7 481 78.2
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 5.7e-217 757.7 484 77.1
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.7e-217 756.9 497 75.5
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 1.3e-216 756.5 494 76.1
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.3e-216 756.5 485 75.5
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.3e-216 756.5 506 74.5
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-216 756.1 489 77.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.2e-216 755.7 482 78.0
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.2e-216 755.7 497 75.7
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.4e-215 753.1 489 76.9
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.8e-215 752.7 493 77.1
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.8e-215 752.7 483 76.8
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.8e-215 752.7 486 77.2
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-213 746.1 488 76.0
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 1.7e-213 746.1 486 76.3
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 1.7e-213 746.1 496 75.0
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 2.2e-213 745.7 495 75.2
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 2.2e-213 745.7 484 76.4
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 3.8e-213 745.0 498 74.9
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 8.5e-213 743.8 542 72.3
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.1e-212 743.4 512 73.8
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 3.2e-212 741.9 475 76.4
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.2e-211 740.0 491 74.7
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 3.6e-211 738.4 483 75.8
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 4.4e-209 731.5 480 74.6
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 5.7e-209 731.1 487 75.8
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.2e-208 729.2 498 72.7
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.2e-208 729.2 498 72.7
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 3.1e-207 725.3 497 73.6
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 3.1e-207 725.3 525 72.0
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.6e-206 723.0 481 73.8
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 2.7e-206 722.2 485 73.6
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 5.5e-204 714.5 486 73.3
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 2.1e-203 712.6 493 71.8
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 2.0e-201 706.1 449 76.8
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 3.4e-201 705.3 485 71.3
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.8e-200 702.2 498 72.1
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.4e-199 699.1 483 71.4
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 1.6e-198 696.4 499 69.5
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 8.6e-197 690.6 518 68.7
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.5e-196 689.9 489 70.3
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 2.3e-194 682.6 497 67.8
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 8.9e-194 680.6 488 69.3
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.2e-193 680.2 489 69.9
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 7.5e-193 677.6 497 71.6
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 9.8e-193 677.2 488 68.0
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.7e-192 676.4 515 67.6
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 3.7e-192 675.2 491 70.3
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 1.3e-189 666.8 471 70.7
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 3.9e-189 665.2 498 67.1
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 6.6e-189 664.5 506 69.0
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.5e-188 663.3 484 68.2
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 2.5e-188 662.5 494 69.6
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 3.6e-187 658.7 567 61.6
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 2.6e-185 652.5 484 68.2
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.3e-184 650.2 489 65.6
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 2.7e-182 642.5 480 67.5
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 4.6e-182 641.7 461 69.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.7e-181 639.8 488 63.3
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 1.6e-179 633.3 480 66.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 3.6e-179 632.1 504 63.1
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.9e-176 622.5 396 78.0
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.3e-176 620.9 513 65.1
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 3.1e-162 575.9 378 77.5
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 8.9e-162 574.3 502 58.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 5.8e-161 571.6 451 62.1
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-157 560.5 349 81.4
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.9e-156 556.6 493 57.8
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.3e-155 553.9 357 79.0
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.2e-153 547.4 358 77.4
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 9.3e-151 537.7 548 54.7
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 1.2e-150 537.3 397 68.0
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.9e-150 534.6 392 71.2
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 8.1e-147 524.6 363 74.4
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 3.2e-143 512.7 391 67.8
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 4.2e-143 512.3 356 74.2
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.5e-132 477.2 305 79.7
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.2e-126 457.6 294 77.2
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-126 457.6 467 51.8
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.7e-124 448.0 400 62.0
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.1e-122 442.6 273 81.7
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-121 441.0 281 78.6
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.5e-116 424.1 275 76.0
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.3e-91 341.3 233 73.0
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 5.5e-87 325.9 246 71.1
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.0e-85 319.7 193 81.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 8.8e-85 318.5 473 38.9
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.9e-75 286.2 180 76.7
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 1.2e-73 281.6 204 70.1
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 1.0e-64 251.9 200 62.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 2.7e-57 227.3 229 54.6
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 8.6e-56 222.2 135 78.5
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 9.5e-55 218.8 239 51.5
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.4e-52 210.3 132 78.0
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 4.4e-52 209.9 149 69.1
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 5.8e-52 209.5 153 72.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-51 208.0 257 51.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.3e-48 198.4 143 68.5
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.2e-44 185.3 116 76.7
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.4e-42 178.3 99 83.8
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.4e-42 178.3 99 83.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 1.5e-39 168.3 129 65.1
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.9e-39 167.9 116 71.6
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.7e-35 154.8 213 44.1
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 4.2e-26 123.6 108 64.8
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.3e-24 118.6 67 85.1
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 1.8e-24 118.2 78 74.4
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 8.7e-24 115.9 97 66.0
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 1.5e-23 115.2 63 85.7
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 8.1e-22 109.4 67 77.6
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 2.4e-21 107.8 68 73.5
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.5e-20 103.6 65 80.0
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.8e-19 100.5 65 76.9
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.1e-18 99.0 65 75.4
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 5.5e-18 96.7 65 76.9
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 4.6e-17 93.6 183 35.5
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.1e-15 89.0 77 63.6
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 3.1e-13 80.9 48 68.8
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.2e-09 68.9 38 76.3


User provided reference genes

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