Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 5.2e-116 421.0 203 100.0
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 2.5e-86 322.4 201 76.1
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 3.3e-86 322.0 193 75.1
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 3.3e-86 322.0 192 77.1
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 2.3e-84 315.8 191 74.9
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.2e-83 313.5 190 76.8
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 4.4e-83 311.6 188 76.1
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 9.8e-83 310.5 189 77.8
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 2.2e-82 309.3 195 74.4
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.7e-82 308.5 192 74.5
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 1.9e-81 306.2 195 71.8
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 2.4e-81 305.8 194 74.7
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 3.2e-81 305.4 192 73.4
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 3.5e-80 302.0 192 73.4
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 6.0e-80 301.2 183 76.0
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 6.0e-80 301.2 190 75.3
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 1.0e-79 300.4 194 72.2
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 1.0e-79 300.4 179 77.1
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 1.3e-79 300.1 190 74.7
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 1.3e-79 300.1 188 73.4
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 3.9e-79 298.5 169 80.5
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.6e-79 297.7 193 71.0
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 6.6e-79 297.7 193 71.0
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 8.6e-79 297.4 195 72.8
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 1.1e-78 297.0 192 72.4
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 3.3e-78 295.4 196 70.9
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 4.3e-78 295.0 201 70.1
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 5.6e-78 294.7 193 73.6
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 7.3e-78 294.3 192 71.4
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 7.3e-78 294.3 192 71.4
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 9.5e-78 293.9 192 70.8
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 9.5e-78 293.9 202 71.3
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 1.2e-77 293.5 189 72.0
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 1.2e-77 293.5 189 72.0
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 1.2e-77 293.5 197 70.6
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.2e-77 293.5 196 68.9
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.6e-77 293.1 193 71.0
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 2.8e-77 292.4 194 70.1
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 3.6e-77 292.0 192 71.4
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 3.6e-77 292.0 192 71.4
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 6.2e-77 291.2 191 71.2
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 8.1e-77 290.8 191 71.2
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.4e-76 290.0 192 70.8
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 1.8e-76 289.7 189 70.9
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 2.3e-76 289.3 197 68.5
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 4.0e-76 288.5 194 71.6
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 5.2e-76 288.1 200 67.0
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 5.2e-76 288.1 198 68.2
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 8.9e-76 287.3 194 69.1
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 1.2e-75 287.0 201 69.7
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 1.2e-75 287.0 188 69.7
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 1.5e-75 286.6 196 68.4
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.0e-75 286.2 205 67.8
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 2.0e-75 286.2 201 67.7
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 2.0e-75 286.2 198 67.7
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 2.0e-75 286.2 189 72.0
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 3.4e-75 285.4 198 66.7
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 3.4e-75 285.4 198 66.7
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 4.4e-75 285.0 193 69.4
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 5.8e-75 284.6 198 67.2
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 9.8e-75 283.9 194 69.1
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.7e-74 283.1 190 69.5
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.7e-74 283.1 198 66.2
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 2.2e-74 282.7 199 68.8
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 3.7e-74 282.0 192 68.8
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 4.9e-74 281.6 199 68.8
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 6.4e-74 281.2 193 67.9
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 1.1e-73 280.4 191 67.5
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.9e-73 279.6 164 76.2
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.2e-73 278.9 211 64.9
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 3.2e-73 278.9 211 64.9
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 3.2e-73 278.9 198 67.2
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 9.2e-73 277.3 193 67.9
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.2e-72 276.9 187 71.1
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.2e-72 276.9 197 65.0
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 1.2e-72 276.9 194 68.0
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 1.6e-72 276.6 190 67.9
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 2.1e-72 276.2 209 64.1
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 2.7e-72 275.8 197 65.0
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 3.5e-72 275.4 187 70.6
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 4.6e-72 275.0 196 65.8
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 7.8e-72 274.2 165 76.4
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 1.3e-71 273.5 195 66.2
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 3.9e-71 271.9 168 74.4
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 5.1e-71 271.6 198 65.2
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 6.6e-71 271.2 194 67.0
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.5e-70 270.0 198 64.6
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 1.9e-70 269.6 198 65.7
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 5.6e-70 268.1 195 65.1
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 7.3e-70 267.7 193 64.2
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 7.3e-70 267.7 196 65.3
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 2.1e-69 266.2 190 67.9
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.8e-68 263.1 177 68.4
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 4.0e-68 261.9 180 67.8
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 6.8e-68 261.2 216 61.1
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 6.8e-68 261.2 198 63.6
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 8.9e-68 260.8 198 64.1
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 4.4e-67 258.5 202 61.9
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 9.9e-67 257.3 181 66.9
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 1.4e-65 253.4 188 63.3
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 3.2e-65 252.3 191 62.8
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 4.1e-65 251.9 172 68.6
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 5.4e-65 251.5 174 68.4
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 6.0e-64 248.1 191 63.9
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 8.6e-63 244.2 190 60.5
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 1.1e-62 243.8 194 62.9
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 2.5e-62 242.7 145 73.8
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 3.3e-62 242.3 178 64.6
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 3.3e-62 242.3 178 65.2
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 7.3e-62 241.1 152 73.7
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.6e-61 240.0 303 45.2
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 1.1e-60 237.3 191 60.2
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 6.8e-60 234.6 192 59.4
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 6.8e-60 234.6 192 59.4
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 1.5e-59 233.4 192 59.9
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 2.6e-59 232.6 192 59.4
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 9.3e-57 224.2 157 70.7
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 2.5e-54 216.1 154 69.5
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 9.6e-54 214.2 128 73.4
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 1.8e-52 209.9 123 78.9
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 3.1e-52 209.1 201 53.7
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 6.9e-52 208.0 168 58.9
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 2.0e-51 206.5 157 62.4
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 2.7e-48 196.1 168 51.8
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 5.6e-46 188.3 190 50.0
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 6.7e-39 164.9 171 49.1
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.1e-36 157.5 172 44.8
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 1.3e-34 150.6 169 49.1
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 2.5e-33 146.4 147 48.3
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 4.2e-33 145.6 168 45.2
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 6.7e-31 138.3 175 40.6
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 2.1e-29 133.3 77 75.3
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 9.0e-28 127.9 190 34.7
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 3.2e-25 119.4 166 39.8
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 4.5e-19 99.0 61 63.9
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 1.9e-17 93.6 167 34.1
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 3.0e-15 86.3 115 45.2
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 1.1e-12 77.8 66 63.6
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 1.4e-12 77.4 70 54.3
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 5.9e-11 72.0 71 49.3


User provided reference genes

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