Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 1.7e-76 289.3 143 100.0
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 9.8e-37 157.1 135 63.0
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 2.8e-36 155.6 147 57.8
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 4.9e-36 154.8 148 58.8
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 7.0e-35 151.0 144 58.3
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 1.2e-34 150.2 148 57.4
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.9e-33 145.6 148 56.8
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 6.6e-33 144.4 147 55.8
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 8.6e-33 144.1 141 53.2
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 1.5e-32 143.3 151 57.0
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.9e-32 142.9 148 56.8
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.9e-32 142.9 148 56.8
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.2e-31 140.2 142 52.1
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 1.2e-31 140.2 145 51.7
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.8e-31 139.0 142 51.4
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 6.1e-31 137.9 145 51.7
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 1.4e-30 136.7 142 51.4
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 1.8e-30 136.3 135 57.0
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 5.2e-30 134.8 163 50.3
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 6.8e-30 134.4 144 55.6
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.5e-29 133.3 138 52.9
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 2.6e-29 132.5 149 51.0
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 5.8e-29 131.3 151 54.3
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 7.5e-29 131.0 143 48.3
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 7.5e-29 131.0 139 51.1
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 9.8e-29 130.6 140 51.4
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.7e-28 128.6 141 49.6
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.7e-28 128.6 151 53.0
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 3.7e-28 128.6 137 51.8
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.7e-28 128.6 147 52.4
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 4.9e-28 128.3 144 52.8
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 8.3e-28 127.5 143 50.3
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 1.1e-27 127.1 145 50.3
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 1.1e-27 127.1 137 51.8
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 1.4e-27 126.7 151 52.3
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.8e-27 126.3 145 50.3
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.8e-27 126.3 144 48.6
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 2.4e-27 125.9 136 48.5
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 3.2e-27 125.6 117 59.0
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 5.4e-27 124.8 144 51.4
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 7.0e-27 124.4 146 48.6
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 9.2e-27 124.0 134 51.5
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 1.6e-26 123.2 139 51.1
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 4.6e-26 121.7 138 50.0
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 6.0e-26 121.3 144 51.4
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 6.0e-26 121.3 147 53.1
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 7.8e-26 120.9 142 49.3
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 1.3e-25 120.2 132 50.8
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 1.7e-25 119.8 141 48.9
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 2.3e-25 119.4 143 51.0
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.0e-25 119.0 141 48.9
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 5.0e-25 118.2 138 54.3
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 5.0e-25 118.2 138 54.3
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 6.6e-25 117.9 136 49.3
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 6.6e-25 117.9 143 50.3
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 8.6e-25 117.5 145 51.7
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 1.1e-24 117.1 138 48.6
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 1.1e-24 117.1 143 50.3
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 1.9e-24 116.3 142 50.0
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.9e-24 116.3 144 49.3
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 2.5e-24 115.9 141 49.6
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 3.3e-24 115.5 134 48.5
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.3e-24 115.5 130 46.9
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 3.3e-24 115.5 140 45.0
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 4.3e-24 115.2 137 50.4
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 5.6e-24 114.8 131 51.9
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 5.6e-24 114.8 131 51.9
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.2e-23 113.6 136 48.5
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.6e-23 113.2 145 51.0
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 1.6e-23 113.2 137 49.6
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 2.8e-23 112.5 141 46.1
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.6e-23 112.1 146 45.9
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 4.7e-23 111.7 127 51.2
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 4.7e-23 111.7 147 45.6
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 6.2e-23 111.3 154 46.1
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 6.2e-23 111.3 133 48.1
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.8e-22 109.8 130 46.9
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.3e-22 109.4 134 51.5
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 2.3e-22 109.4 139 43.2
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 4.0e-22 108.6 138 46.4
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 4.0e-22 108.6 138 46.4
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 5.2e-22 108.2 142 50.0
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 6.8e-22 107.8 126 46.0
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 8.9e-22 107.5 124 53.2
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 1.2e-21 107.1 130 46.9
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 2.0e-21 106.3 130 46.2
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 2.6e-21 105.9 135 47.4
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 3.4e-21 105.5 149 43.6
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 5.8e-21 104.8 147 44.2
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 1.3e-20 103.6 140 45.0
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 1.3e-20 103.6 132 47.7
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.7e-20 103.2 147 41.5
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.7e-20 103.2 150 44.7
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 2.9e-20 102.4 134 45.5
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 3.7e-20 102.1 135 47.4
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 3.7e-20 102.1 151 44.4
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 4.9e-20 101.7 130 49.2
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 4.9e-20 101.7 146 43.2
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 6.4e-20 101.3 115 50.4
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 8.3e-20 100.9 144 46.5
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 8.3e-20 100.9 129 46.5
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 8.3e-20 100.9 138 44.2
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 1.1e-19 100.5 150 46.0
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 3.2e-19 99.0 139 43.9
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 4.1e-19 98.6 115 49.6
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.0e-17 94.0 127 45.7
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.0e-17 94.0 127 45.7
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 2.3e-17 92.8 127 45.7
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 2.3e-17 92.8 127 42.5
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 3.0e-17 92.4 128 42.2
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 3.0e-17 92.4 134 42.5
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 5.0e-17 91.7 124 46.0
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 5.0e-17 91.7 112 49.1
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 6.6e-17 91.3 127 44.9
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 6.6e-17 91.3 139 44.6
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 6.6e-17 91.3 127 46.5
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 6.6e-17 91.3 127 42.5
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 2.5e-16 89.4 132 43.2
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 3.3e-16 89.0 127 44.1
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 5.6e-16 88.2 128 44.5
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.6e-15 86.7 127 40.2
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 2.1e-15 86.3 127 42.5
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 2.1e-15 86.3 129 40.3
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 4.7e-15 85.1 129 40.3
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 6.2e-15 84.7 153 40.5
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 1.8e-14 83.2 140 40.0
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.2e-14 81.6 138 42.0
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 8.9e-14 80.9 129 43.4
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.2e-13 80.5 143 38.5
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 1.5e-13 80.1 99 44.4
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.0e-13 79.7 128 41.4
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 2.0e-13 79.7 127 40.2
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 2.0e-13 79.7 143 36.4
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 4.4e-13 78.6 101 46.5
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 5.8e-13 78.2 123 43.9
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 5.8e-13 78.2 135 40.0
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 9.9e-13 77.4 134 39.6
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 4.9e-12 75.1 130 38.5
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 6.4e-12 74.7 127 38.6
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.4e-12 74.7 133 35.3
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.4e-11 73.6 130 40.8
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.9e-11 73.2 136 38.2
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 3.2e-11 72.4 132 36.4
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.1e-10 69.7 133 34.6
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 2.1e-10 69.7 91 40.7
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.6e-10 68.6 142 31.0
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.0e-10 68.2 151 34.4
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.3e-09 67.0 67 53.7
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.3e-09 67.0 76 52.6
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.7e-09 66.6 50 68.0
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 1.7e-09 66.6 59 57.6
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 3.0e-09 65.9 91 48.4
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 3.9e-09 65.5 109 42.2
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 8.6e-09 64.3 105 43.8
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 8.6e-09 64.3 105 43.8
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.1e-08 63.9 111 37.8
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 1.5e-08 63.5 132 37.1
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 2.5e-08 62.8 109 41.3
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 3.3e-08 62.4 143 32.9
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 5.6e-08 61.6 155 33.5
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 1.2e-07 60.5 40 65.0
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.2e-07 60.5 44 63.6
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 2.8e-07 59.3 132 34.1
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.7e-07 58.5 131 32.1
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 8.1e-07 57.8 90 40.0
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-06 57.4 138 29.7
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.1e-06 57.4 131 31.3
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.0e-06 55.5 142 33.1


User provided reference genes

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