Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 9.7e-132 473.4 226 100.0
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 5.0e-120 434.5 225 88.0
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 2.5e-119 432.2 226 88.9
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 4.7e-118 427.9 225 88.0
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 8.0e-118 427.2 226 87.6
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 1.4e-117 426.4 225 86.7
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 6.8e-117 424.1 225 85.8
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 1.2e-116 423.3 226 86.3
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 2.6e-116 422.2 226 87.2
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 2.8e-115 418.7 225 84.4
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.7e-115 418.3 226 85.8
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.3e-115 417.5 225 84.4
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 2.4e-114 415.6 224 85.7
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.2e-114 415.2 225 84.0
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.2e-114 415.2 225 83.6
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.2e-114 415.2 224 84.8
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 5.4e-114 414.5 225 83.6
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 9.2e-114 413.7 221 86.0
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 9.2e-114 413.7 221 85.5
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 9.2e-114 413.7 225 84.4
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 9.2e-114 413.7 225 82.7
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 1.2e-113 413.3 221 86.0
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.0e-113 412.5 221 86.0
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 2.0e-113 412.5 226 84.1
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 2.7e-113 412.1 221 86.0
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 2.7e-113 412.1 225 83.6
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 3.5e-113 411.8 224 85.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 7.8e-113 410.6 224 84.4
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 1.0e-112 410.2 221 82.8
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 1.0e-112 410.2 221 85.5
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 1.3e-112 409.8 219 84.0
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.7e-112 409.5 224 83.0
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 1.7e-112 409.5 224 83.0
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.7e-112 409.5 224 83.5
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 2.3e-112 409.1 224 83.0
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.3e-112 409.1 221 82.4
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 2.3e-112 409.1 224 83.9
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 2.3e-112 409.1 224 83.5
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.9e-112 408.7 225 81.8
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 2.9e-112 408.7 222 84.7
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 5.0e-112 407.9 224 83.0
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 6.6e-112 407.5 224 83.5
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 6.6e-112 407.5 226 83.2
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.1e-111 406.8 225 82.2
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 1.5e-111 406.4 211 88.2
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.5e-111 406.4 225 82.2
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.5e-111 406.4 224 84.4
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.9e-111 406.0 224 83.9
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.9e-111 406.0 222 83.8
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.9e-111 406.0 226 82.3
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 3.3e-111 405.2 219 84.5
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 3.3e-111 405.2 226 80.5
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 5.6e-111 404.4 225 83.1
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.3e-111 404.1 226 82.3
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 7.3e-111 404.1 225 81.8
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 7.3e-111 404.1 211 87.7
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 7.3e-111 404.1 224 82.1
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 7.3e-111 404.1 224 82.6
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 9.5e-111 403.7 222 83.8
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 1.2e-110 403.3 226 81.9
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 1.2e-110 403.3 225 80.9
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 1.2e-110 403.3 225 82.7
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 1.2e-110 403.3 224 81.2
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 1.2e-110 403.3 225 81.8
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 1.6e-110 402.9 225 82.2
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 1.6e-110 402.9 225 82.2
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 1.6e-110 402.9 222 82.9
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 2.1e-110 402.5 220 83.2
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 2.1e-110 402.5 220 83.2
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 2.1e-110 402.5 220 83.2
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 2.1e-110 402.5 222 82.9
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 2.8e-110 402.1 224 83.9
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 2.8e-110 402.1 226 83.2
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 2.8e-110 402.1 226 82.7
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 3.6e-110 401.7 222 82.0
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 4.7e-110 401.4 224 83.5
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 4.7e-110 401.4 224 81.7
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 6.1e-110 401.0 223 83.0
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 8.0e-110 400.6 225 81.3
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 8.0e-110 400.6 225 81.3
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.0e-109 400.2 224 80.4
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.4e-109 399.8 226 81.4
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 82.0
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 82.9
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 3.1e-109 398.7 225 82.2
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 3.1e-109 398.7 223 81.2
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 3.1e-109 398.7 224 81.2
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 4.0e-109 398.3 221 81.0
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 4.0e-109 398.3 222 81.5
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 4.0e-109 398.3 239 79.5
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 5.2e-109 397.9 226 81.0
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 5.2e-109 397.9 222 80.6
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 1.2e-108 396.7 223 82.5
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 2.0e-108 396.0 221 81.0
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 2.0e-108 396.0 224 79.5
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 2.6e-108 395.6 226 81.4
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.4e-108 395.2 225 80.9
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 5.8e-108 394.4 224 81.2
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 7.5e-108 394.0 217 82.5
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 7.5e-108 394.0 222 81.5
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 7.5e-108 394.0 222 81.5
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 9.8e-108 393.7 222 81.1
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 3.7e-107 391.7 219 83.1
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 4.9e-107 391.3 219 80.8
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.3e-107 390.6 224 80.8
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 1.4e-106 389.8 226 80.5
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 1.9e-106 389.4 222 79.3
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 4.1e-106 388.3 221 79.2
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 5.4e-106 387.9 219 79.9
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 9.2e-106 387.1 222 79.7
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 1.2e-105 386.7 224 80.4
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 3.5e-105 385.2 245 73.1
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.0e-104 383.6 216 81.9
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.0e-104 383.6 251 71.7
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.3e-103 377.5 279 67.0
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.6e-102 376.3 216 80.1
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.9e-98 362.8 205 82.0
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 9.2e-98 360.5 221 72.9
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 5.2e-93 344.7 228 71.1
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 8.3e-91 337.4 221 70.1
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 8.3e-91 337.4 222 69.4
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 1.1e-87 327.0 217 67.7
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 6.8e-85 317.8 222 65.8
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 1.6e-81 306.6 164 89.0
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 5.6e-79 298.1 163 85.9
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 1.2e-76 290.4 169 75.7
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.0e-72 277.3 153 81.7
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 3.3e-71 272.3 160 74.4
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 7.3e-71 271.2 219 58.0
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 3.5e-65 252.3 131 83.2
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.1e-63 247.3 163 71.2
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 8.4e-59 231.1 210 53.8
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 3.2e-58 229.2 133 76.7
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 2.1e-57 226.5 218 49.5
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 3.7e-54 215.7 213 47.4
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 5.8e-52 208.4 148 73.0
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.0e-51 207.6 111 87.4
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 2.2e-51 206.5 115 76.5
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 3.0e-48 196.1 114 72.8
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 6.5e-43 178.3 130 60.0
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 8.8e-40 167.9 87 80.5
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 1.3e-38 164.1 102 73.5
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 3.6e-33 146.0 220 35.9
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 3.0e-32 142.9 97 76.3
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.6e-28 130.6 134 49.3
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.7e-27 127.1 75 81.3
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 7.2e-26 121.7 78 78.2
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.6e-25 120.6 66 81.8
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 1.6e-25 120.6 61 90.2
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 2.3e-24 116.7 83 61.4
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 3.7e-22 109.4 61 88.5
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.4e-21 106.7 61 88.5
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 7.0e-21 105.1 57 73.7
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 7.7e-20 101.7 64 78.1
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 1.3e-19 100.9 54 83.3
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.8e-19 99.4 64 75.0
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 8.5e-19 98.2 65 75.4
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 6.8e-16 88.6 128 45.3
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 1.3e-14 84.3 54 79.6
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 4.1e-13 79.3 100 44.0
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 2.2e-11 73.6 50 70.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 1.1e-10 71.2 39 76.9
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 2.6e-07 60.1 35 80.0
DCAR_028902 Daucus carota HOM05D004399 ORTHO05D175529 7.5e-07 58.5 43 69.8


User provided reference genes

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