Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 2.9e-125 451.8 219 100.0
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 4.8e-35 152.1 185 51.9
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 4.7e-30 135.6 184 47.3
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 6.1e-30 135.2 185 48.1
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 6.1e-30 135.2 184 48.4
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 1.0e-29 134.4 187 47.1
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.8e-29 133.7 187 49.2
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.8e-29 133.7 187 49.2
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 1.8e-29 133.7 184 46.7
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 2.3e-29 133.3 188 47.3
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 4.0e-29 132.5 184 47.8
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 4.0e-29 132.5 185 48.1
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 8.8e-29 131.3 184 45.7
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 8.8e-29 131.3 184 45.7
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 8.8e-29 131.3 187 46.0
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 8.8e-29 131.3 135 57.8
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 1.5e-28 130.6 183 47.0
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 1.5e-28 130.6 184 46.7
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 2.0e-28 130.2 184 46.2
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 2.6e-28 129.8 185 47.0
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.3e-28 129.4 184 47.3
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 3.3e-28 129.4 187 46.0
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 4.4e-28 129.0 185 44.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 4.4e-28 129.0 187 46.0
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 4.4e-28 129.0 189 47.1
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 4.4e-28 129.0 184 45.7
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 5.7e-28 128.6 183 45.9
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 7.5e-28 128.3 180 48.3
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 7.5e-28 128.3 184 46.7
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 7.5e-28 128.3 172 48.3
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 9.7e-28 127.9 184 46.7
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.7e-28 127.9 184 46.7
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.7e-28 127.9 184 46.7
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 9.7e-28 127.9 184 46.7
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 1.3e-27 127.5 184 45.7
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.3e-27 127.5 187 45.5
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.3e-27 127.5 187 45.5
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.3e-27 127.5 184 45.7
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.7e-27 127.1 161 49.1
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 1.7e-27 127.1 188 46.3
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 1.7e-27 127.1 187 44.9
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 1.7e-27 127.1 185 46.5
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.2e-27 126.7 184 45.7
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 2.2e-27 126.7 188 45.2
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 3.7e-27 125.9 184 45.1
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.7e-27 125.9 165 48.5
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 4.8e-27 125.6 188 45.7
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.8e-27 125.6 215 42.8
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 6.3e-27 125.2 140 52.9
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 8.2e-27 124.8 140 52.1
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 8.2e-27 124.8 207 43.5
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 1.1e-26 124.4 184 44.0
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 1.1e-26 124.4 188 43.1
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.4e-26 124.0 184 45.1
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 1.4e-26 124.0 167 47.9
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.4e-26 124.0 184 44.6
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 2.4e-26 123.2 188 45.2
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 2.4e-26 123.2 138 52.9
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 3.1e-26 122.9 181 46.4
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 3.1e-26 122.9 184 44.6
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 3.1e-26 122.9 182 45.1
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 5.3e-26 122.1 183 44.3
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 7.0e-26 121.7 189 46.0
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 9.1e-26 121.3 140 52.1
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 9.1e-26 121.3 167 46.7
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 9.1e-26 121.3 184 44.0
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.2e-25 120.9 184 44.0
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.2e-25 120.9 140 50.7
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 1.2e-25 120.9 184 44.6
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 1.2e-25 120.9 168 46.4
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 1.6e-25 120.6 184 42.9
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 2.0e-25 120.2 184 42.9
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.0e-25 120.2 179 44.7
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 2.7e-25 119.8 139 51.8
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 3.5e-25 119.4 179 44.7
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 3.5e-25 119.4 188 43.6
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 3.5e-25 119.4 141 53.9
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 3.5e-25 119.4 169 45.6
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 3.5e-25 119.4 189 44.4
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 4.5e-25 119.0 187 44.9
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 4.5e-25 119.0 170 47.6
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 4.5e-25 119.0 170 47.6
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 5.9e-25 118.6 199 42.7
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 5.9e-25 118.6 188 44.7
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 7.7e-25 118.2 184 44.6
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 1.3e-24 117.5 168 45.8
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 2.2e-24 116.7 204 42.6
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 3.8e-24 115.9 156 50.0
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 5.0e-24 115.5 140 50.7
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.5e-24 114.8 178 45.5
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 1.5e-23 114.0 154 48.7
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 1.9e-23 113.6 207 39.6
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.5e-23 113.2 175 42.9
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 2.5e-23 113.2 178 43.3
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 2.5e-23 113.2 184 41.8
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.2e-23 112.8 187 42.2
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.2e-23 112.5 141 49.6
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 5.5e-23 112.1 139 49.6
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 5.5e-23 112.1 139 49.6
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 9.4e-23 111.3 178 43.3
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 2.1e-22 110.2 137 48.9
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.1e-22 110.2 184 42.9
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 2.7e-22 109.8 157 47.1
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 2.7e-22 109.8 180 44.4
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.7e-22 109.8 190 41.6
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 2.7e-22 109.8 157 45.9
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 3.6e-22 109.4 168 42.9
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 1.0e-21 107.8 119 57.1
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 1.8e-21 107.1 175 42.9
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 3.0e-21 106.3 170 43.5
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 6.8e-21 105.1 184 42.4
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 6.8e-21 105.1 133 50.4
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 7.5e-20 101.7 136 47.8
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 1.3e-19 100.9 187 39.6
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 1.7e-19 100.5 163 43.6
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 2.2e-19 100.1 170 42.9
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.1e-18 97.8 148 48.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 4.1e-18 95.9 165 40.0
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 5.4e-18 95.5 151 41.1
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 3.5e-17 92.8 183 39.9
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 6.5e-16 88.6 130 43.1
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 1.1e-15 87.8 53 81.1
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 1.1e-15 87.8 113 46.9
PGR083G1960 Punica granatum HOM05D000500 ORTHO05D000367 1.5e-15 87.4 60 71.7
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 1.5e-15 87.4 164 39.0
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 5.5e-15 85.5 159 39.6
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 2.8e-14 83.2 173 38.7
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.6e-14 82.8 171 39.2
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 1.2e-09 67.8 35 82.9
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 2.7e-09 66.6 126 39.7
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 6.6e-08 62.0 146 32.9
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 2.5e-07 60.1 156 34.6
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 7.3e-07 58.5 135 35.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 2.8e-06 56.6 54 51.9
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 4.7e-06 55.8 117 36.8
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 8.0e-06 55.1 163 34.4


User provided reference genes

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