Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0867 Punica granatum HOM05D005558 ORTHO05D006832 1.6e-132 476.1 236 100.0
Cfa014170 Carpinus fangiana HOM05D005558 ORTHO05D006832 1.1e-82 310.5 215 74.0
QL02p016334 Quercus lobata HOM05D005558 ORTHO05D006832 5.7e-82 308.1 193 79.3
COL.COLO4_12262 Corchorus olitorius HOM05D005558 ORTHO05D006832 1.1e-80 303.9 185 79.5
AL1G34110 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 1.5e-79 300.1 187 76.5
Thecc.08G097300 Theobroma cacao HOM05D005558 ORTHO05D006832 1.5e-79 300.1 185 78.4
CiPaw.08G079200 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.4e-79 298.9 184 76.6
CARHR021510 Cardamine hirsuta HOM05D005558 ORTHO05D006832 5.9e-79 298.1 217 66.8
Eucgr.F01955 Eucalyptus grandis HOM05D005558 ORTHO05D006832 5.9e-79 298.1 220 70.5
Gorai.009G185800 Gossypium raimondii HOM05D005558 ORTHO05D006832 5.9e-79 298.1 185 78.4
Carub.0001s2052 Capsella rubella HOM05D005558 ORTHO05D006832 1.0e-78 297.4 187 75.9
Hma1.2p1_0914F.1_g236230 Hydrangea macrophylla HOM05D005558 ORTHO05D006832 1.0e-78 297.4 195 71.3
Gohir.A05G177400 Gossypium hirsutum HOM05D005558 ORTHO05D006832 1.3e-78 297.0 185 77.8
TWI12G1391 Tripterygium wilfordii HOM05D005558 ORTHO05D006832 1.3e-78 297.0 179 79.9
CANSAT25G0089 Cannabis sativa HOM05D005558 ORTHO05D006832 2.2e-78 296.2 185 76.2
Gohir.D05G180800 Gossypium hirsutum HOM05D005558 ORTHO05D006832 2.2e-78 296.2 185 77.8
BcaB03g12837 Brassica carinata HOM05D005558 ORTHO05D006832 3.8e-78 295.4 187 76.5
THA.LOC104813721 Tarenaya hassleriana HOM05D005558 ORTHO05D006832 5.0e-78 295.0 213 69.0
Thhalv10008709m.g Eutrema salsugineum HOM05D005558 ORTHO05D006832 8.5e-78 294.3 188 75.5
RcHm_v2.0_Chr7g0217691 Rosa chinensis HOM05D005558 ORTHO05D006832 1.1e-77 293.9 187 79.1
Sp1g18730 Schrenkiella parvula HOM05D005558 ORTHO05D006832 1.1e-77 293.9 186 75.8
Potri.002G001500 Populus trichocarpa HOM05D005558 ORTHO05D006832 2.5e-77 292.7 186 76.3
Duzib116G0928 Durio zibethinus HOM05D005558 ORTHO05D006832 9.4e-77 290.8 184 76.6
Manes.18G000600 Manihot esculenta HOM05D005558 ORTHO05D006832 1.2e-76 290.4 189 77.2
Glyma.15G161100 Glycine max HOM05D005558 ORTHO05D006832 2.1e-76 289.7 186 74.7
CiPaw.07G129900 Carya illinoinensis HOM05D005558 ORTHO05D006832 3.6e-76 288.9 191 73.3
Glyma.07G221200 Glycine max HOM05D005558 ORTHO05D006832 7.9e-76 287.7 166 82.5
Nitab4.5_0003423g0040 Nicotiana tabacum HOM05D005558 ORTHO05D006832 1.0e-75 287.3 188 72.9
AT1G21065 Arabidopsis thaliana HOM05D005558 ORTHO05D006832 1.4e-75 287.0 174 77.6
BcaC05g26014 Brassica carinata HOM05D005558 ORTHO05D006832 1.8e-75 286.6 193 73.1
MD06G1057400 Malus domestica HOM05D005558 ORTHO05D006832 3.0e-75 285.8 179 77.1
MD07G1016000 Malus domestica HOM05D005558 ORTHO05D006832 5.1e-75 285.0 149 87.9
Prupe.5G000800 Prunus persica HOM05D005558 ORTHO05D006832 5.1e-75 285.0 173 79.2
Ca_18758_v3 Cicer arietinum L. HOM05D005558 ORTHO05D006832 8.8e-75 284.3 174 80.5
Nn6g31548 Nelumbo nucifera HOM05D005558 ORTHO05D006832 8.8e-75 284.3 186 73.7
Phvul.002G097800 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 1.1e-74 283.9 156 84.6
A08p29100 Brassica napus HOM05D005558 ORTHO05D006832 2.0e-74 283.1 174 77.6
Lalb_Chr15g0083971 Lupinus albus HOM05D005558 ORTHO05D006832 2.0e-74 283.1 167 79.6
PSO170G6225 Papaver somniferum HOM05D005558 ORTHO05D006832 2.0e-74 283.1 184 73.9
BcaB07g32099 Brassica carinata HOM05D005558 ORTHO05D006832 2.5e-74 282.7 186 75.3
BraA06t24816Z Brassica rapa HOM05D005558 ORTHO05D006832 2.5e-74 282.7 192 71.9
BraA08t34846Z Brassica rapa HOM05D005558 ORTHO05D006832 2.5e-74 282.7 173 78.0
Sc17g0004140 Simmondsia chinensis HOM05D005558 ORTHO05D006832 4.3e-74 282.0 171 78.9
Hund05339 Selenicereus undatus HOM05D005558 ORTHO05D006832 5.7e-74 281.6 187 76.5
arahy.Tifrunner.gnm1.ann1.09GV4T Arachis hypogaea HOM05D005558 ORTHO05D006832 7.4e-74 281.2 165 80.6
arahy.Tifrunner.gnm1.ann1.8D2970 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.4e-74 281.2 173 76.9
arahy.Tifrunner.gnm1.ann1.GVHP98 Arachis hypogaea HOM05D005558 ORTHO05D006832 7.4e-74 281.2 173 76.9
arahy.Tifrunner.gnm1.ann1.H4MLSW Arachis hypogaea HOM05D005558 ORTHO05D006832 7.4e-74 281.2 165 80.6
BcaC07g39074 Brassica carinata HOM05D005558 ORTHO05D006832 7.4e-74 281.2 171 78.4
BolC8t49687H Brassica oleracea HOM05D005558 ORTHO05D006832 7.4e-74 281.2 171 78.4
GSVIVG01013466001 Vitis vinifera HOM05D005558 ORTHO05D006832 7.4e-74 281.2 149 86.6
ClCG11G019260 Citrullus lanatus HOM05D005558 ORTHO05D006832 1.3e-73 280.4 176 73.9
FvH4_5g26780 Fragaria vesca HOM05D005558 ORTHO05D006832 1.3e-73 280.4 185 74.6
FAN18G4437 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.3e-73 280.4 185 74.6
Lj4g0004166 Lotus japonicus HOM05D005558 ORTHO05D006832 1.3e-73 280.4 167 80.8
FAN04G1408 Fragaria x ananassa HOM05D005558 ORTHO05D006832 1.7e-73 280.0 217 67.7
Sopen12g031670 Solanum pennellii HOM05D005558 ORTHO05D006832 1.7e-73 280.0 185 72.4
A06p17130 Brassica napus HOM05D005558 ORTHO05D006832 2.2e-73 279.6 192 71.4
CAN.G208.43 Capsicum annuum HOM05D005558 ORTHO05D006832 2.2e-73 279.6 177 74.0
CsaV3_4G037850 Cucumis sativus L. HOM05D005558 ORTHO05D006832 2.2e-73 279.6 178 73.6
Aqoxy5G00965 Aquilegia oxysepala HOM05D005558 ORTHO05D006832 2.8e-73 279.3 192 69.3
MSTRG.24533 Avicennia marina HOM05D005558 ORTHO05D006832 3.7e-73 278.9 156 82.7
Solyc12g095770.2 Solanum lycopersicum HOM05D005558 ORTHO05D006832 3.7e-73 278.9 185 72.4
PSO017G1036 Papaver somniferum HOM05D005558 ORTHO05D006832 4.8e-73 278.5 221 67.4
CSS0024776 Camellia sinensis var. sinensis HOM05D005558 ORTHO05D006832 6.3e-73 278.1 192 70.8
FAN08G1374 Fragaria x ananassa HOM05D005558 ORTHO05D006832 6.3e-73 278.1 186 74.7
Cc10_g00070 Coffea canephora HOM05D005558 ORTHO05D006832 1.4e-72 276.9 146 84.2
EL10Ac7g17248 Beta vulgaris HOM05D005558 ORTHO05D006832 2.4e-72 276.2 186 73.7
Lsat_1_v5_gn_2_2740 Lactuca sativa HOM05D005558 ORTHO05D006832 2.4e-72 276.2 192 69.3
TPR.G20977 Trifolium pratense HOM05D005558 ORTHO05D006832 9.1e-72 274.2 186 72.6
Medtr4g084120 Medicago truncatula HOM05D005558 ORTHO05D006832 1.2e-71 273.9 184 76.1
Migut.N03003 Erythranthe guttata HOM05D005558 ORTHO05D006832 3.4e-71 272.3 157 79.6
PGSC0003DMG400029397 Solanum tuberosum HOM05D005558 ORTHO05D006832 4.5e-71 271.9 145 82.8
Psat7g129880 Pisum sativum HOM05D005558 ORTHO05D006832 5.9e-71 271.6 206 68.0
ATR0605G185 Amborella trichopoda HOM05D005558 ORTHO05D006832 1.3e-70 270.4 196 66.8
Lalb_Chr05g0219661 Lupinus albus HOM05D005558 ORTHO05D006832 2.9e-70 269.2 146 84.9
Ah.08g212310 Amaranthus hybridus HOM05D005558 ORTHO05D006832 6.5e-70 268.1 181 71.3
Rhsim06G0000500 Rhododendron simsii HOM05D005558 ORTHO05D006832 6.5e-70 268.1 233 60.1
Peaxi162Scf00064g01430 Petunia axillaris HOM05D005558 ORTHO05D006832 1.1e-69 267.3 167 73.1
HPP92_021698 Vanilla planifolia HOM05D005558 ORTHO05D006832 1.6e-68 263.5 141 82.3
Os02g0187500 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 7.9e-68 261.2 142 83.1
Zm00001eb387340 Zea mays HOM05D005558 ORTHO05D006832 1.0e-67 260.8 154 75.3
HPP92_017798 Vanilla planifolia HOM05D005558 ORTHO05D006832 5.1e-67 258.5 178 70.2
Atru.chr13.17 Acer truncatum HOM05D005558 ORTHO05D006832 8.8e-67 257.7 162 79.6
Ciclev10002303m.g Citrus clementina HOM05D005558 ORTHO05D006832 3.3e-66 255.8 178 72.5
SGA_v2.0_scaffold19G08925 Striga asiatica HOM05D005558 ORTHO05D006832 3.3e-66 255.8 151 77.5
SEGI_40156 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 2.8e-65 252.7 149 77.9
Zm00001eb234660 Zea mays HOM05D005558 ORTHO05D006832 4.8e-65 251.9 142 78.2
Sabra02G0001000 Salix brachista HOM05D005558 ORTHO05D006832 6.3e-65 251.5 164 74.4
SMO259G0018 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 5.3e-64 248.4 140 77.1
Mapoly0002s0034 Marchantia polymorpha HOM05D005558 ORTHO05D006832 9.1e-64 247.7 140 77.9
Pp3c1_31360 Physcomitrium patens HOM05D005558 ORTHO05D006832 7.7e-63 244.6 177 64.4
TAR381G1539 Trochodendron aralioides HOM05D005558 ORTHO05D006832 5.0e-62 241.9 162 74.1
C08p20580 Brassica napus HOM05D005558 ORTHO05D006832 1.9e-61 240.0 149 77.9
Nitab4.5_0001309g0160 Nicotiana tabacum HOM05D005558 ORTHO05D006832 2.7e-60 236.1 127 82.7
AUR62041000 Chenopodium quinoa HOM05D005558 ORTHO05D006832 1.0e-59 234.2 172 67.4
ECA238G0376 Erigeron canadensis HOM05D005558 ORTHO05D006832 1.4e-59 233.8 126 84.9
HanXRQChr14g0427511 Helianthus annuus HOM05D005558 ORTHO05D006832 1.8e-59 233.4 139 79.9
Sed0017561 Sechium edule HOM05D005558 ORTHO05D006832 4.0e-59 232.3 172 67.4
Actinidia15539 Actinidia chinensis HOM05D005558 ORTHO05D006832 1.1e-58 230.7 123 85.4
MELO3C017079.2 Cucumis melo HOM05D005558 ORTHO05D006832 7.5e-58 228.0 119 85.7
Dinv05517 Davidia involucrata HOM05D005558 ORTHO05D006832 3.1e-56 222.6 152 71.1
Phvul.009G240200 Phaseolus vulgaris HOM05D005558 ORTHO05D006832 7.0e-56 221.5 149 73.2
Cre17.g739300 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 3.5e-55 219.2 140 68.6
Lj4C814G4 Lonicera japonica HOM05D005558 ORTHO05D006832 1.7e-54 216.9 166 64.5
VMungo0251G0776 Vigna mungo HOM05D005558 ORTHO05D006832 5.0e-54 215.3 130 80.8
BolC5t30678H Brassica oleracea HOM05D000370 ORTHO05D006832 4.2e-53 212.2 191 57.1
Prupe.5G000700 Prunus persica HOM05D005558 ORTHO05D006832 1.2e-52 210.7 120 80.0
SGA_v2.0_scaffold25G11031 Striga asiatica HOM05D005558 ORTHO05D006832 1.5e-50 203.8 142 70.4
Os06g0638200 Oryza sativa ssp. japonica HOM05D005558 ORTHO05D006832 8.5e-46 188.0 98 84.7
Haze_22894 Corylus avellana HOM05D005558 ORTHO05D006832 1.5e-45 187.2 194 53.1
SMO203G0115 Selaginella moellendorffii HOM05D005558 ORTHO05D006832 1.7e-41 173.7 148 53.4
Pp3c2_25680 Physcomitrium patens HOM05D005558 ORTHO05D006832 3.7e-41 172.6 148 52.7
vmacro21735 Vaccinium macrocarpon HOM05D005558 ORTHO05D006832 3.7e-41 172.6 148 61.5
Oeu000735.2 Olea europaea HOM05D005558 ORTHO05D006832 2.4e-40 169.9 94 78.7
SEGI_39286 Sequoiadendron giganteum HOM05D005558 ORTHO05D006832 1.2e-39 167.5 153 52.3
Peaxi162Scf00064g01422 Petunia axillaris HOM05D005558 ORTHO05D006832 1.3e-38 164.1 127 63.0
Mapoly0065s0101 Marchantia polymorpha HOM05D005558 ORTHO05D006832 2.9e-38 162.9 197 46.2
TAR376G0283 Trochodendron aralioides HOM05D005558 ORTHO05D006832 6.6e-38 161.8 94 78.7
Cre01.g043100 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D006832 9.5e-37 157.9 163 49.1
CDE04G3086 Ceratophyllum demersum HOM05D000433 ORTHO05D000443 6.8e-35 151.8 179 46.4
Cfa023908 Carpinus fangiana HOM05D005558 ORTHO05D006832 9.8e-34 147.9 172 44.2
SalBow6G6347 Salvia bowleyana HOM05D005558 ORTHO05D006832 1.2e-31 141.0 154 48.7
CBR_g570 Chara braunii HOM05D005558 ORTHO05D006832 5.9e-31 138.7 85 72.9
AL8G17720 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 3.6e-28 129.4 72 83.3
MCO09G054 Micromonas commoda HOM05D005558 ORTHO05D006832 1.2e-26 124.4 133 48.9
AL5G16180 Arabidopsis lyrata HOM05D005558 ORTHO05D006832 2.9e-25 119.8 70 80.0
C05p19780 Brassica napus HOM05D005558 ORTHO05D006832 7.0e-24 115.2 59 84.7
HPP92_021704 Vanilla planifolia HOM05D005558 ORTHO05D006832 9.2e-24 114.8 118 50.0
Aa31LG7G5210 Aethionema arabicum HOM05D005558 ORTHO05D006832 2.5e-21 106.7 226 35.4
BcaC07g39073 Brassica carinata HOM05D005558 ORTHO05D006832 3.6e-20 102.8 53 84.9
AagrBONN_evm.TU.Sc2ySwM_344.2923 Anthoceros agrestis HOM05D005558 ORTHO05D006832 2.9e-17 93.2 82 54.9
Cpa.g.sc36.94 Carica papaya HOM05D005558 ORTHO05D006832 1.1e-13 81.3 123 44.7
DCAR_022964 Daucus carota HOM05D005558 ORTHO05D006832 1.8e-11 73.9 79 50.6
Cpa.g.sc36.93 Carica papaya HOM05D005558 ORTHO05D006832 8.9e-11 71.6 31 96.8
PRCOL_00001425 Prasinoderma coloniale HOM05D005558 ORTHO05D006832 1.2e-10 71.2 151 29.8
Cre09.g396850 Chlamydomonas reinhardtii HOM05D005558 ORTHO05D034498 3.2e-08 63.2 123 32.5
MCO09G751 Micromonas commoda HOM05D005558 ORTHO05D034498 7.1e-08 62.0 143 30.1
EL10Ac3g07438 Beta vulgaris HOM05D000371 ORTHO05D013217 3.9e-06 56.2 71 49.3


User provided reference genes

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