Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0831 Punica granatum HOM05D007878 ORTHO05D010022 5.6e-264 914.1 587 100.0
Duzib084G0698 Durio zibethinus HOM05D007878 ORTHO05D010022 1.3e-119 434.5 597 48.9
Thecc.03G095300 Theobroma cacao HOM05D007878 ORTHO05D010022 8.4e-119 431.8 597 57.8
Prupe.5G199300 Prunus persica HOM05D007878 ORTHO05D010022 2.7e-109 400.2 616 47.2
RcHm_v2.0_Chr7g0182231 Rosa chinensis HOM05D007878 ORTHO05D010022 6.7e-108 395.6 606 50.3
Dinv38757 Davidia involucrata HOM05D007878 ORTHO05D010022 3.1e-105 386.7 599 56.9
FAN08G0929 Fragaria x ananassa HOM05D007878 ORTHO05D010022 3.4e-104 383.3 597 44.2
FAN13G2185 Fragaria x ananassa HOM05D007878 ORTHO05D010022 2.7e-101 373.6 603 43.3
FAN18G1316 Fragaria x ananassa HOM05D007878 ORTHO05D010022 5.2e-100 369.4 603 43.6
COL.COLO4_38427 Corchorus olitorius HOM05D007878 ORTHO05D010022 1.3e-98 364.8 591 53.8
Potri.015G061500 Populus trichocarpa HOM05D007878 ORTHO05D010022 1.1e-97 361.7 569 46.0
Manes.14G082500 Manihot esculenta HOM05D007878 ORTHO05D010022 1.4e-97 361.3 595 54.5
Actinidia04859 Actinidia chinensis HOM05D007878 ORTHO05D010022 2.2e-95 354.0 588 45.2
Atru.chr9.783 Acer truncatum HOM05D007878 ORTHO05D010022 8.5e-95 352.1 590 43.2
FvH4_5g14430 Fragaria vesca HOM05D007878 ORTHO05D010022 1.1e-94 351.7 603 44.8
Gohir.A03G068300 Gossypium hirsutum HOM05D007878 ORTHO05D010022 7.2e-94 349.0 591 42.1
Gohir.D03G094900 Gossypium hirsutum HOM05D007878 ORTHO05D010022 8.0e-93 345.5 591 42.1
MD14G1206000 Malus domestica HOM05D007878 ORTHO05D010022 1.4e-92 344.7 583 49.2
TAR374G1173 Trochodendron aralioides HOM05D007878 ORTHO05D010022 2.3e-92 344.0 606 43.2
Nn4g23313 Nelumbo nucifera HOM05D007878 ORTHO05D010022 9.7e-91 338.6 598 45.7
CiPaw.11G048800 Carya illinoinensis HOM05D007878 ORTHO05D010022 2.8e-90 337.0 604 43.7
Manes.06G088500 Manihot esculenta HOM05D007878 ORTHO05D010022 1.1e-86 325.1 599 50.4
Aqoxy3G03537 Aquilegia oxysepala HOM05D007878 ORTHO05D010022 3.6e-85 320.1 607 44.6
TWI60G1109 Tripterygium wilfordii HOM05D007878 ORTHO05D010022 2.3e-84 317.4 602 47.3
Cfa019282 Carpinus fangiana HOM05D007878 ORTHO05D010022 5.2e-84 316.2 592 41.7
Actinidia09234 Actinidia chinensis HOM05D007878 ORTHO05D010022 7.5e-83 312.4 588 42.5
CiPaw.11G048500 Carya illinoinensis HOM05D007878 ORTHO05D010022 5.9e-80 302.8 588 42.2
Gorai.003G099100 Gossypium raimondii HOM05D007878 ORTHO05D010022 1.3e-79 301.6 558 39.8
Cc04_g14870 Coffea canephora HOM05D007878 ORTHO05D010022 2.1e-77 294.3 596 39.3
Nitab4.5_0002756g0040 Nicotiana tabacum HOM05D007878 ORTHO05D010022 2.7e-77 293.9 591 50.8
GSVIVG01007952001 Vitis vinifera HOM05D007878 ORTHO05D010022 4.7e-77 293.1 484 56.4
Eucgr.B00555 Eucalyptus grandis HOM05D007878 ORTHO05D010022 7.5e-75 285.8 486 53.7
MBI16_g14990_MAGBIO Magnolia biondii HOM05D007878 ORTHO05D010022 3.7e-74 283.5 595 38.7
Ciclev10024608m.g Citrus clementina HOM05D007878 ORTHO05D010022 5.4e-73 279.6 580 37.4
QL10p018347 Quercus lobata HOM05D007878 ORTHO05D010022 5.4e-73 279.6 526 49.2
Phvul.003G187300 Phaseolus vulgaris HOM05D007878 ORTHO05D010022 9.2e-73 278.9 591 37.6
Nitab4.5_0001211g0090 Nicotiana tabacum HOM05D007878 ORTHO05D010022 1.2e-72 278.5 553 50.3
Glyma.17G103300 Glycine max HOM05D007878 ORTHO05D010022 5.9e-72 276.2 586 44.7
ClCG06G015920 Citrullus lanatus HOM05D007878 ORTHO05D010022 6.6e-71 272.7 590 38.3
PGSC0003DMG400024662 Solanum tuberosum HOM05D007878 ORTHO05D010022 7.3e-70 269.2 591 44.2
MD06G1198500 Malus domestica HOM05D007878 ORTHO05D010022 2.3e-68 264.2 569 41.8
Sopen03g034610 Solanum pennellii HOM05D007878 ORTHO05D010022 2.0e-67 261.2 592 42.7
Sed0013205 Sechium edule HOM05D007878 ORTHO05D010022 3.4e-67 260.4 594 39.9
Solyc03g115620.2 Solanum lycopersicum HOM05D007878 ORTHO05D010022 1.7e-66 258.1 593 44.7
CANSAT80G1712 Cannabis sativa HOM05D007878 ORTHO05D010022 6.4e-66 256.1 600 38.3
CAN.G479.49 Capsicum annuum HOM05D007878 ORTHO05D010022 2.4e-65 254.2 593 39.1
Peaxi162Scf00274g00029 Petunia axillaris HOM05D007878 ORTHO05D010022 2.3e-63 247.7 591 42.8
Lj4g0012809 Lotus japonicus HOM05D007878 ORTHO05D010022 2.1e-61 241.1 587 35.4
Oeu031812.2 Olea europaea HOM05D007878 ORTHO05D010022 6.2e-61 239.6 588 39.8
Nn3g17364 Nelumbo nucifera HOM05D007878 ORTHO05D010022 1.8e-60 238.0 422 44.8
Haze_07666 Corylus avellana HOM05D007878 ORTHO05D010022 5.8e-59 233.0 542 37.5
MELO3C017199.2 Cucumis melo HOM05D007878 ORTHO05D010022 5.4e-57 226.5 603 33.7
PSO063G3897 Papaver somniferum HOM05D007878 ORTHO05D010022 7.0e-57 226.1 597 34.3
CsaV3_1G002630 Cucumis sativus L. HOM05D007878 ORTHO05D010022 2.3e-55 221.1 593 34.7
DCAR_016585 Daucus carota HOM05D007878 ORTHO05D010022 1.1e-54 218.8 589 33.3
ATR0730G174 Amborella trichopoda HOM05D007878 ORTHO05D010022 1.9e-54 218.0 604 44.0
Medtr4g109150 Medicago truncatula HOM05D007878 ORTHO05D010022 7.3e-54 216.1 590 33.2
Cpa.g.sc13.307 Carica papaya HOM05D007878 ORTHO05D010022 8.9e-52 209.1 562 36.3
Oeu052465.1 Olea europaea HOM05D007878 ORTHO05D010022 8.9e-52 209.1 588 39.1
Oeu052466.1 Olea europaea HOM05D007878 ORTHO05D010022 8.9e-52 209.1 588 39.1
Ca_21797_v3 Cicer arietinum L. HOM05D007878 ORTHO05D010022 1.3e-50 205.3 562 33.5
TPR.G1999 Trifolium pratense HOM05D007878 ORTHO05D010022 4.1e-49 200.3 587 42.2
Oeu046990.1 Olea europaea HOM05D007878 ORTHO05D010022 4.6e-48 196.8 574 41.3
arahy.Tifrunner.gnm1.ann1.3W98EY Arachis hypogaea HOM05D007878 ORTHO05D010022 1.9e-41 174.9 596 31.5
CSS0029238 Camellia sinensis var. sinensis HOM05D000957 ORTHO05D000754 3.2e-33 147.5 531 30.1
Oeu047269.3 Olea europaea HOM05D007878 ORTHO05D010022 5.4e-33 146.7 535 33.3
ECA246G4297 Erigeron canadensis HOM05D007878 ORTHO05D010022 1.0e-31 142.5 551 31.4
Migut.I00229 Erythranthe guttata HOM05D007878 ORTHO05D010022 3.0e-31 141.0 586 28.0
Psat4g049000 Pisum sativum HOM05D007878 ORTHO05D010022 9.6e-30 136.0 587 28.3
arahy.Tifrunner.gnm1.ann1.QT4JJ4 Arachis hypogaea HOM05D007878 ORTHO05D010022 5.8e-27 126.7 531 29.0
HanXRQChr05g0157141 Helianthus annuus HOM05D007878 ORTHO05D010022 1.3e-26 125.6 526 29.1
Atru.chr9.308 Acer truncatum HOM05D007878 ORTHO05D010022 3.2e-25 120.9 212 40.6
DCAR_026030 Daucus carota HOM05D000094 ORTHO05D003883 3.2e-25 120.9 236 39.0
Lsat_1_v5_gn_5_21161 Lactuca sativa HOM05D007878 ORTHO05D010022 3.4e-19 100.9 283 32.5
SEGI_16968 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.3e-15 89.0 628 26.1
MSTRG.22991 Avicennia marina HOM05D007878 ORTHO05D010022 1.9e-14 85.1 128 48.4
SEGI_39497 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 5.6e-14 83.6 588 28.6
DCAR_021514 Daucus carota HOM05D007878 ORTHO05D010022 2.8e-13 81.3 349 27.5
SEGI_06346 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 1.2e-11 75.9 327 26.6
Zm00001eb400500 Zea mays HOM05D007878 ORTHO05D010022 3.4e-11 74.3 268 27.2
QL05p067335 Quercus lobata HOM05D001827 ORTHO05D001790 4.5e-11 73.9 567 25.0
MBI14_g13533_MAGBIO Magnolia biondii HOM05D001827 ORTHO05D001790 1.3e-10 72.4 312 27.9
CDE02G3428 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 2.9e-10 71.2 611 24.9
Zm00001eb133280 Zea mays HOM05D001827 ORTHO05D001790 2.9e-10 71.2 291 30.2
Sabra15G0086500 Salix brachista HOM05D007878 ORTHO05D010022 4.9e-10 70.5 129 41.9
Haze_07028 Corylus avellana HOM05D001827 ORTHO05D001790 8.4e-10 69.7 574 23.0
Rhsim02G0090400 Rhododendron simsii HOM05D001827 ORTHO05D001790 1.1e-09 69.3 573 28.8
arahy.Tifrunner.gnm1.ann1.H3BYSM Arachis hypogaea HOM05D007878 ORTHO05D010022 1.4e-09 68.9 148 35.8
Glyma.15G120700 Glycine max HOM05D001827 ORTHO05D001790 2.5e-09 68.2 297 30.0
MD05G1362200 Malus domestica HOM05D001827 ORTHO05D001790 2.5e-09 68.2 590 25.3
Ca_00766_v3 Cicer arietinum L. HOM05D001827 ORTHO05D001790 3.2e-09 67.8 311 27.0
arahy.Tifrunner.gnm1.ann1.0CJ0KN Arachis hypogaea HOM05D007878 ORTHO05D010022 5.5e-09 67.0 133 36.8
Gorai.002G101700 Gossypium raimondii HOM05D001827 ORTHO05D001790 5.5e-09 67.0 321 27.4
Hund23030 Selenicereus undatus HOM05D001827 ORTHO05D001790 5.5e-09 67.0 335 28.7
Lalb_Chr15g0088281 Lupinus albus HOM05D001827 ORTHO05D001790 7.1e-09 66.6 597 22.8
CDE01G0404 Ceratophyllum demersum HOM05D001827 ORTHO05D001790 1.2e-08 65.9 300 27.3
Thecc.07G010300 Theobroma cacao HOM05D001827 ORTHO05D001790 1.2e-08 65.9 310 29.7
FAN21G1072 Fragaria x ananassa HOM05D001827 ORTHO05D001790 2.1e-08 65.1 280 27.9
TAR626G1140 Trochodendron aralioides HOM05D001827 ORTHO05D001790 2.1e-08 65.1 315 27.3
arahy.Tifrunner.gnm1.ann1.L4SZG2 Arachis hypogaea HOM05D001827 ORTHO05D001790 2.7e-08 64.7 581 25.3
CsaV3_1G015450 Cucumis sativus L. HOM05D001827 ORTHO05D001790 2.7e-08 64.7 567 32.8
Gohir.D01G077200 Gossypium hirsutum HOM05D001827 ORTHO05D001790 2.7e-08 64.7 321 27.4
MELO3C026089.2 Cucumis melo HOM05D001827 ORTHO05D001790 3.5e-08 64.3 565 35.2
PSO210G4928 Papaver somniferum HOM05D001827 ORTHO05D001790 3.5e-08 64.3 282 29.1
QL05p066984 Quercus lobata HOM05D001827 ORTHO05D001790 3.5e-08 64.3 563 28.4
Aa31LG5G11980 Aethionema arabicum HOM05D001812 ORTHO05D001874 4.6e-08 63.9 603 21.9
Eucgr.E03845 Eucalyptus grandis HOM05D001827 ORTHO05D001790 4.6e-08 63.9 567 24.9
Os12g0271600 Oryza sativa ssp. japonica HOM05D001827 ORTHO05D001790 4.6e-08 63.9 249 29.7
Lalb_Chr20g0114111 Lupinus albus HOM05D001827 ORTHO05D001790 6.0e-08 63.5 279 31.9
Lj6g0012256 Lotus japonicus HOM05D001827 ORTHO05D001790 1.0e-07 62.8 298 27.9
Medtr3g007920 Medicago truncatula HOM05D001827 ORTHO05D001790 1.0e-07 62.8 589 25.8
HPP92_003813 Vanilla planifolia HOM05D001827 ORTHO05D001790 1.3e-07 62.4 279 27.6
Eucgr.L01393 Eucalyptus grandis HOM05D001827 ORTHO05D001790 1.8e-07 62.0 583 24.9
PSO210G6911 Papaver somniferum HOM05D001827 ORTHO05D001790 1.8e-07 62.0 282 28.4
Medtr5g096080 Medicago truncatula HOM05D001827 ORTHO05D001790 2.3e-07 61.6 606 23.9
Eucgr.F02039 Eucalyptus grandis HOM05D001827 ORTHO05D001790 3.0e-07 61.2 598 25.4
Actinidia04995 Actinidia chinensis HOM05D001827 ORTHO05D001790 3.9e-07 60.8 334 27.8
Lalb_Chr12g0195931 Lupinus albus HOM05D001827 ORTHO05D001790 3.9e-07 60.8 323 27.6
Phvul.006G136800 Phaseolus vulgaris HOM05D001827 ORTHO05D001790 3.9e-07 60.8 300 28.0
Sed0000061 Sechium edule HOM05D001827 ORTHO05D001790 3.9e-07 60.8 289 28.7
Hund01866 Selenicereus undatus HOM05D001827 ORTHO05D001790 3.9e-07 60.8 303 29.7
ClCG01G011200 Citrullus lanatus HOM05D001827 ORTHO05D001790 5.1e-07 60.5 578 34.6
COL.COLO4_09854 Corchorus olitorius HOM05D001827 ORTHO05D001790 6.7e-07 60.1 306 28.4
FvH4_3g42741 Fragaria vesca HOM05D001827 ORTHO05D001790 6.7e-07 60.1 328 27.4
Cfa016913 Carpinus fangiana HOM05D001827 ORTHO05D001790 8.7e-07 59.7 332 28.6
Duzib213G1002 Durio zibethinus HOM05D001827 ORTHO05D001790 8.7e-07 59.7 594 32.3
SEGI_23448 Sequoiadendron giganteum HOM05D001827 ORTHO05D001790 8.7e-07 59.7 290 29.0
Aa31LG2G12390 Aethionema arabicum HOM05D001827 ORTHO05D001790 1.1e-06 59.3 326 26.4
TAR629G2670 Trochodendron aralioides HOM05D001812 ORTHO05D001874 1.1e-06 59.3 331 27.5
Actinidia11907 Actinidia chinensis HOM05D001827 ORTHO05D001790 1.5e-06 58.9 275 25.8
MD03G1029200 Malus domestica HOM05D001827 ORTHO05D001790 1.9e-06 58.5 324 27.5
Thecc.06G241600 Theobroma cacao HOM05D001827 ORTHO05D001790 1.9e-06 58.5 593 24.8
BolC8t49155H Brassica oleracea HOM05D001827 ORTHO05D001790 2.5e-06 58.2 325 26.2
ECA234G3071 Erigeron canadensis HOM05D001827 ORTHO05D001790 2.5e-06 58.2 229 30.6
FAN16G2144 Fragaria x ananassa HOM05D001827 ORTHO05D001790 2.5e-06 58.2 328 27.4
Lj6g0015113 Lotus japonicus HOM05D001827 ORTHO05D001790 2.5e-06 58.2 333 28.2
ClCG10G004390 Citrullus lanatus HOM05D001827 ORTHO05D001790 3.3e-06 57.8 326 26.4
Haze_09842 Corylus avellana HOM05D001827 ORTHO05D001790 3.3e-06 57.8 334 29.0
FAN11G2212 Fragaria x ananassa HOM05D001827 ORTHO05D001790 3.3e-06 57.8 328 27.4
FAN25G2361 Fragaria x ananassa HOM05D001827 ORTHO05D001790 3.3e-06 57.8 328 27.4
Lalb_Chr18g0057361 Lupinus albus HOM05D001827 ORTHO05D001790 4.3e-06 57.4 594 22.4
Prupe.4G003200 Prunus persica HOM05D001827 ORTHO05D001790 4.3e-06 57.4 616 23.9
Manes.08G068500 Manihot esculenta HOM05D001827 ORTHO05D001790 5.7e-06 57.0 332 25.9
QL08p003651 Quercus lobata HOM05D001827 ORTHO05D001790 5.7e-06 57.0 326 27.9
Carub.0001s1184 Capsella rubella HOM05D001827 ORTHO05D001790 7.4e-06 56.6 290 27.9
Hma1.2p1_0048F.1_g027990 Hydrangea macrophylla HOM05D001827 ORTHO05D001790 7.4e-06 56.6 340 23.8
Manes.09G083200 Manihot esculenta HOM05D001827 ORTHO05D001790 7.4e-06 56.6 562 21.7
PGR042G0925 Punica granatum HOM05D001827 ORTHO05D001790 7.4e-06 56.6 574 27.5
C08p15260 Brassica napus HOM05D001827 ORTHO05D001790 9.7e-06 56.2 323 26.0
Glyma.02G301400 Glycine max HOM05D001827 ORTHO05D001790 9.7e-06 56.2 614 23.9


User provided reference genes

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