Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 0.0e+00 1234.2 644 100.0
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 8.4e-128 461.8 618 47.7
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 1.3e-107 394.8 696 40.5
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 4.8e-107 392.9 574 46.9
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 6.9e-106 389.0 664 42.6
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 3.8e-104 383.3 540 45.7
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 6.4e-104 382.5 575 44.0
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 2.7e-102 377.1 504 47.0
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 4.6e-102 376.3 690 40.1
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 4.6e-102 376.3 628 44.1
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 6.0e-102 375.9 487 47.8
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.3e-101 374.8 678 40.9
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.8e-101 374.4 678 40.9
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 1.1e-98 365.2 484 46.7
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 3.4e-97 360.1 705 38.6
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.3e-96 358.2 518 44.0
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.9e-96 357.1 576 44.1
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 8.4e-96 355.5 638 40.4
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.5e-95 354.0 632 42.4
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 4.2e-95 353.2 575 44.7
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 1.1e-92 345.1 492 46.3
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 3.3e-92 343.6 488 46.3
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 4.3e-92 343.2 552 43.8
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.6e-91 341.3 551 42.3
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 3.7e-91 340.1 470 45.1
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 2.6e-89 334.0 470 44.5
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 3.4e-89 333.6 817 34.8
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 5.0e-88 329.7 483 44.1
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 6.5e-88 329.3 411 50.1
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 6.5e-88 329.3 681 37.0
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 6.5e-88 329.3 513 42.3
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 4.2e-87 326.6 412 49.3
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 5.5e-87 326.2 405 49.1
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 3.6e-86 323.6 530 42.8
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 1.0e-85 322.0 523 44.2
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 1.0e-85 322.0 590 40.3
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.0e-85 320.5 525 43.4
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.0e-85 320.5 525 43.4
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.0e-85 320.5 525 43.4
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 6.7e-85 319.3 410 47.3
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 5.7e-84 316.2 537 43.6
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 1.7e-83 314.7 495 43.6
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 1.7e-83 314.7 471 44.2
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 2.2e-83 314.3 483 44.7
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 2.8e-83 313.9 481 42.4
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 6.3e-83 312.8 591 37.4
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 8.2e-83 312.4 539 40.4
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 3.1e-82 310.5 500 43.2
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 1.5e-81 308.1 503 43.3
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 2.0e-81 307.8 585 39.5
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.6e-81 307.4 484 40.9
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 3.4e-81 307.0 422 48.3
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 1.0e-80 305.4 430 44.9
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 1.3e-80 305.1 279 59.5
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.4e-79 301.6 518 41.3
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 2.5e-79 300.8 465 43.4
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 3.2e-79 300.4 614 36.8
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 4.2e-79 300.1 306 57.2
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 3.6e-78 297.0 411 47.0
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 6.1e-78 296.2 448 44.6
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 1.0e-77 295.4 429 43.8
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 3.0e-77 293.9 300 53.3
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 8.8e-77 292.4 420 45.0
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.1e-76 292.0 460 43.0
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 2.6e-76 290.8 504 42.1
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 2.6e-76 290.8 320 54.4
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 4.4e-76 290.0 406 46.6
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 7.4e-76 289.3 491 40.9
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 6.3e-75 286.2 528 39.6
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 1.1e-74 285.4 270 59.3
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 2.4e-74 284.3 542 37.6
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.6e-73 280.8 283 53.7
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 3.5e-73 280.4 604 37.6
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 3.8e-72 276.9 548 38.3
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 8.5e-72 275.8 548 38.3
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.5e-71 274.2 391 42.5
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 1.6e-70 271.6 396 42.9
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 2.1e-70 271.2 513 37.4
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 2.1e-70 271.2 570 36.3
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 2.7e-70 270.8 450 41.6
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 6.1e-70 269.6 530 37.4
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 8.0e-70 269.2 391 42.2
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.8e-69 268.1 300 52.3
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 2.0e-68 264.6 303 49.5
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 2.2e-67 261.2 513 35.3
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 2.8e-67 260.8 513 35.3
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 6.3e-67 259.6 518 37.6
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 3.1e-66 257.3 518 37.6
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.6e-65 255.0 348 46.8
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 4.5e-65 253.4 439 42.8
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 4.5e-65 253.4 439 39.4
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 5.9e-65 253.1 427 40.5
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 8.5e-64 249.2 497 36.4
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 4.2e-63 246.9 421 39.9
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 5.5e-63 246.5 462 37.0
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 9.4e-63 245.7 465 37.2
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 9.4e-63 245.7 454 39.4
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 6.1e-62 243.0 390 42.6
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 2.0e-60 238.0 246 55.3
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 2.4e-58 231.1 251 53.4
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 2.0e-57 228.0 398 39.2
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 3.5e-57 227.3 389 39.8
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.5e-57 227.3 379 41.2
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 1.0e-53 215.7 396 37.9
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 2.8e-51 207.6 300 42.3
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 2.0e-49 201.4 251 49.0
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 2.9e-48 197.6 296 44.3
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 1.2e-46 192.2 225 48.4
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 1.2e-44 185.7 438 35.4
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 4.4e-44 183.7 270 42.2
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.6e-41 175.3 265 42.6
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 2.5e-39 167.9 360 34.4
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 9.5e-39 166.0 406 32.8
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 8.0e-38 162.9 579 29.0
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.7e-35 154.1 267 38.2
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 7.0e-34 149.8 552 27.2
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 9.2e-34 149.4 298 38.3
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 3.9e-32 144.1 541 27.9
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 7.3e-31 139.8 122 60.7
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 3.6e-30 137.5 203 41.9
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 6.4e-27 126.7 145 45.5
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.3e-24 118.2 102 58.8
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 8.1e-22 109.8 319 32.0
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.2e-19 101.7 252 34.1
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 2.7e-17 94.7 262 30.2
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 2.3e-16 91.7 103 46.6
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 8.6e-16 89.7 262 31.3
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 4.7e-14 84.0 188 34.0
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 1.5e-12 79.0 135 35.6
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 2.0e-12 78.6 136 41.2
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.4e-10 72.4 185 36.2
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 1.9e-10 72.0 250 29.2
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 4.2e-10 70.9 149 35.6
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 3.0e-08 64.7 165 33.9
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 3.9e-08 64.3 60 55.0
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 6.6e-08 63.5 164 34.8
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 8.7e-08 63.2 69 47.8
Thhalv10016741m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 1.9e-07 62.0 229 26.6
PSO170G3519 Papaver somniferum HOM05D015611 ORTHO05D026019 3.3e-07 61.2 60 51.7
PRCOL_00004343 Prasinoderma coloniale HOM05D004311 ORTHO05D005145 7.3e-07 60.1 237 26.2
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 9.6e-07 59.7 44 65.9
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 1.3e-06 59.3 231 28.1
PSO339G0153 Papaver somniferum HOM05D015611 ORTHO05D026019 1.3e-06 59.3 141 34.8
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 1.6e-06 58.9 71 39.4
CARHR137580 Cardamine hirsuta HOM05D004311 ORTHO05D005145 2.1e-06 58.5 193 28.0
Ah.13g074370 Amaranthus hybridus HOM05D004311 ORTHO05D005145 2.8e-06 58.2 131 33.6
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 8.1e-06 56.6 111 36.0


User provided reference genes

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