Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0816 Punica granatum HOM05D004150 ORTHO05D005087 3.3e-286 987.6 478 100.0
Eucgr.F01300 Eucalyptus grandis HOM05D004150 ORTHO05D005087 1.2e-235 819.7 481 82.5
Cfa019528 Carpinus fangiana HOM05D004150 ORTHO05D005087 6.7e-223 777.3 478 76.8
Hma1.2p1_2701F.1_g327060 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 2.5e-222 775.4 478 75.7
CANSAT56G2087 Cannabis sativa HOM05D004150 ORTHO05D005087 2.5e-217 758.8 480 75.6
CiPaw.11G157600 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.1e-217 757.3 478 75.1
COL.COLO4_17523 Corchorus olitorius HOM05D004150 ORTHO05D005087 3.0e-215 751.9 481 74.8
GSVIVG01014152001 Vitis vinifera HOM05D004150 ORTHO05D005087 6.7e-215 750.7 478 74.7
Thecc.07G119700 Theobroma cacao HOM05D004150 ORTHO05D005087 2.5e-214 748.8 478 74.3
Potri.003G026500 Populus trichocarpa HOM05D004150 ORTHO05D005087 5.7e-214 747.7 482 73.9
CSS0001873 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 4.8e-213 744.6 479 73.5
Gorai.002G053300 Gossypium raimondii HOM05D004150 ORTHO05D005087 2.0e-211 739.2 479 74.1
Cc05_g10890 Coffea canephora HOM05D004150 ORTHO05D005087 5.9e-211 737.6 478 73.2
MD03G1246300 Malus domestica HOM05D004150 ORTHO05D005087 5.9e-211 737.6 482 73.2
Gohir.A01G052900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 7.7e-211 737.3 478 73.8
Manes.03G091700 Manihot esculenta HOM05D004150 ORTHO05D005087 7.7e-211 737.3 482 74.1
Potri.011G106600 Populus trichocarpa HOM05D004150 ORTHO05D005087 7.7e-211 737.3 484 73.8
Psat5g234480 Pisum sativum HOM05D004150 ORTHO05D005087 1.7e-210 736.1 482 73.2
Gohir.D01G042500 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.0e-210 734.6 479 73.7
VMungo1080G1533 Vigna mungo HOM05D004150 ORTHO05D005087 5.0e-210 734.6 484 74.2
Glyma.12G231700 Glycine max HOM05D004150 ORTHO05D005087 1.1e-209 733.4 482 74.7
Glyma.13G266400 Glycine max HOM05D004150 ORTHO05D005087 1.1e-209 733.4 480 74.0
Phvul.005G079200 Phaseolus vulgaris HOM05D004150 ORTHO05D005087 3.6e-208 728.4 484 73.3
Gohir.A13G149900 Gossypium hirsutum HOM05D004150 ORTHO05D005087 2.3e-207 725.7 478 73.0
TWI38G0344 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 3.9e-207 724.9 481 73.0
Ca_03941_v3 Cicer arietinum L. HOM05D004150 ORTHO05D005087 6.7e-207 724.2 482 72.2
CSS0042666 Camellia sinensis var. sinensis HOM05D004150 ORTHO05D005087 8.8e-207 723.8 484 72.5
Atru.chr2.2029 Acer truncatum HOM05D004150 ORTHO05D005087 4.3e-206 721.5 482 73.7
Manes.15G097400 Manihot esculenta HOM05D004150 ORTHO05D005087 5.7e-206 721.1 481 72.3
Medtr2g075340 Medicago truncatula HOM05D004150 ORTHO05D005087 1.3e-205 719.9 478 71.3
RcHm_v2.0_Chr5g0030011 Rosa chinensis HOM05D004150 ORTHO05D005087 1.3e-205 719.9 478 73.0
Atru.chr2.2041 Acer truncatum HOM05D004150 ORTHO05D005087 3.7e-205 718.4 482 73.4
MD11G1267300 Malus domestica HOM05D004150 ORTHO05D005087 4.8e-205 718.0 480 71.0
FAN21G0088 Fragaria x ananassa HOM05D004150 ORTHO05D005087 8.2e-205 717.2 480 72.9
TWI39G0561 Tripterygium wilfordii HOM05D004150 ORTHO05D005087 4.1e-204 714.9 481 70.9
FvH4_3g17970 Fragaria vesca HOM05D004150 ORTHO05D005087 9.1e-204 713.8 481 73.0
Oeu058459.1 Olea europaea HOM05D004150 ORTHO05D005087 2.6e-203 712.2 478 70.7
CsaV3_4G032910 Cucumis sativus L. HOM05D004150 ORTHO05D005087 8.5e-202 707.2 477 71.7
Sc03g0010640 Simmondsia chinensis HOM05D004150 ORTHO05D005087 4.2e-201 704.9 483 69.4
Lsat_1_v5_gn_9_100501 Lactuca sativa HOM05D004150 ORTHO05D005087 5.5e-201 704.5 482 71.2
Lj3g0004524 Lotus japonicus HOM05D004150 ORTHO05D005087 3.6e-200 701.8 487 71.3
Lj1A826G61 Lonicera japonica HOM05D004150 ORTHO05D005087 7.9e-200 700.7 485 69.7
MBI06_g16571_MAGBIO Magnolia biondii HOM05D004150 ORTHO05D005087 7.9e-200 700.7 478 70.7
Nn6g34456 Nelumbo nucifera HOM05D004150 ORTHO05D005087 7.9e-200 700.7 478 69.9
Sabra16G0254300 Salix brachista HOM05D004150 ORTHO05D005087 1.0e-199 700.3 531 66.1
Oeu010027.3 Olea europaea HOM05D004150 ORTHO05D005087 2.3e-199 699.1 502 66.3
Ciclev10019972m.g Citrus clementina HOM05D004150 ORTHO05D005087 2.6e-198 695.7 486 71.2
THA.LOC104815577 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 3.3e-198 695.3 480 69.4
CAN.G375.32 Capsicum annuum HOM05D004150 ORTHO05D005087 7.4e-198 694.1 523 63.5
FAN25G1025 Fragaria x ananassa HOM05D004150 ORTHO05D005087 9.7e-198 693.7 519 67.8
Solyc07g062250.3 Solanum lycopersicum HOM05D004150 ORTHO05D005087 9.7e-198 693.7 521 63.9
Lalb_Chr19g0133751 Lupinus albus HOM05D004150 ORTHO05D005087 1.3e-197 693.3 482 70.5
Sopen07g030520 Solanum pennellii HOM05D004150 ORTHO05D005087 1.3e-197 693.3 521 63.9
PGSC0003DMG400007094 Solanum tuberosum HOM05D004150 ORTHO05D005087 6.3e-197 691.0 521 63.7
MELO3C025660.2 Cucumis melo HOM05D004150 ORTHO05D005087 1.1e-196 690.3 488 68.4
THA.LOC104810428 Tarenaya hassleriana HOM05D004150 ORTHO05D005087 2.4e-196 689.1 480 69.6
ClCG11G017260 Citrullus lanatus HOM05D004150 ORTHO05D005087 9.1e-196 687.2 545 62.6
Lalb_Chr25g0285681 Lupinus albus HOM05D004150 ORTHO05D005087 9.1e-196 687.2 480 69.4
FAN11G2611 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.0e-195 686.0 500 69.2
FAN16G0401 Fragaria x ananassa HOM05D004150 ORTHO05D005087 2.6e-195 685.6 517 67.1
MSTRG.14976 Avicennia marina HOM05D004150 ORTHO05D005087 2.9e-194 682.2 479 68.3
EL10Ac4g08396 Beta vulgaris HOM05D004150 ORTHO05D005087 3.8e-194 681.8 481 65.9
Nitab4.5_0000347g0180 Nicotiana tabacum HOM05D004150 ORTHO05D005087 5.5e-193 677.9 521 63.9
PSO170G1443 Papaver somniferum HOM05D004150 ORTHO05D005087 1.2e-192 676.8 482 68.0
Peaxi162Scf00111g01477 Petunia axillaris HOM05D004150 ORTHO05D005087 2.1e-192 676.0 524 63.4
Aqoxy1G01964 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 8.8e-191 670.6 478 66.1
PSO782G0021 Papaver somniferum HOM05D004150 ORTHO05D005087 8.8e-191 670.6 482 67.6
SGA_v2.0_scaffold130G34274 Striga asiatica HOM05D004150 ORTHO05D005087 1.1e-190 670.2 504 64.5
HanXRQChr10g0305531 Helianthus annuus HOM05D004150 ORTHO05D005087 7.5e-190 667.5 482 66.8
TAR629G2423 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.8e-188 662.9 440 71.8
Gohir.D13G154200 Gossypium hirsutum HOM05D004150 ORTHO05D005087 3.1e-188 662.1 437 72.3
TPR.G13030 Trifolium pratense HOM05D004150 ORTHO05D005087 5.3e-188 661.4 485 67.4
Lalb_Chr03g0031251 Lupinus albus HOM05D004150 ORTHO05D005087 3.2e-185 652.1 482 66.6
vmacro09408 Vaccinium macrocarpon HOM05D004150 ORTHO05D005087 1.6e-184 649.8 487 64.9
HanXRQChr17g0556791 Helianthus annuus HOM05D004150 ORTHO05D005087 1.4e-183 646.7 479 66.2
AL3G27140 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.3e-183 646.0 483 65.8
Aa31LG8G2040 Aethionema arabicum HOM05D004150 ORTHO05D005087 5.2e-183 644.8 480 65.2
Rhsim04G0036400 Rhododendron simsii HOM05D004150 ORTHO05D005087 1.2e-182 643.7 485 64.9
AT3G14830 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.0e-182 642.9 484 65.3
Rhsim04G0035400 Rhododendron simsii HOM05D004150 ORTHO05D005087 3.4e-182 642.1 485 64.9
Thhalv10011465m.g Eutrema salsugineum HOM05D004150 ORTHO05D005087 4.4e-182 641.7 480 65.8
ECA234G0958 Erigeron canadensis HOM05D004150 ORTHO05D005087 7.5e-182 641.0 481 65.1
Actinidia21439 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.3e-181 640.2 480 65.6
Sp1g39990 Schrenkiella parvula HOM05D004150 ORTHO05D005087 3.7e-181 638.6 479 66.4
SalBow7G0391 Salvia bowleyana HOM05D004150 ORTHO05D005087 1.1e-180 637.1 479 64.7
Gorai.013G174200 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.4e-180 636.7 489 64.6
Sed0003063 Sechium edule HOM05D004150 ORTHO05D005087 1.4e-180 636.7 439 69.7
Actinidia12595 Actinidia chinensis HOM05D004150 ORTHO05D005087 1.2e-179 633.6 545 58.5
CARHR089770 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.9e-178 629.0 483 64.8
Carub.0003s1449 Capsella rubella HOM05D004150 ORTHO05D005087 7.2e-177 624.4 489 63.8
Ah.04g164080 Amaranthus hybridus HOM05D004150 ORTHO05D005087 9.4e-177 624.0 480 63.1
Carub.0001s4264 Capsella rubella HOM05D004150 ORTHO05D005087 1.2e-176 623.6 479 64.7
AT1G53450 Arabidopsis thaliana HOM05D004150 ORTHO05D005087 2.7e-176 622.5 479 64.5
AUR62019617 Chenopodium quinoa HOM05D004150 ORTHO05D005087 2.7e-176 622.5 482 62.7
Migut.H02018 Erythranthe guttata HOM05D004150 ORTHO05D005087 4.7e-176 621.7 443 67.0
AUR62039606 Chenopodium quinoa HOM05D004150 ORTHO05D005087 8.0e-176 620.9 482 62.4
BolC5t33929H Brassica oleracea HOM05D004150 ORTHO05D005087 2.3e-175 619.4 481 64.7
CARHR043670 Cardamine hirsuta HOM05D004150 ORTHO05D005087 2.3e-175 619.4 479 64.5
BraA06t23329Z Brassica rapa HOM05D004150 ORTHO05D005087 4.0e-175 618.6 482 63.3
C05p52450 Brassica napus HOM05D004150 ORTHO05D005087 8.8e-175 617.5 481 64.2
BcaC08g43529 Brassica carinata HOM05D004150 ORTHO05D005087 1.2e-174 617.1 482 62.9
A06p01010 Brassica napus HOM05D004150 ORTHO05D005087 1.2e-174 617.1 482 63.1
BolC6t35999H Brassica oleracea HOM05D004150 ORTHO05D005087 1.2e-174 617.1 482 62.9
BcaC05g29034 Brassica carinata HOM05D004150 ORTHO05D005087 1.5e-174 616.7 481 64.0
BcaB07g33329 Brassica carinata HOM05D004150 ORTHO05D005087 1.7e-173 613.2 478 62.8
Dinv15009 Davidia involucrata HOM05D004150 ORTHO05D005087 1.4e-172 610.1 391 73.7
BraA05t22282Z Brassica rapa HOM05D004150 ORTHO05D005087 5.4e-172 608.2 480 63.8
BcaB06g25355 Brassica carinata HOM05D004150 ORTHO05D005087 4.5e-171 605.1 480 63.8
A05p34660 Brassica napus HOM05D004150 ORTHO05D005087 7.7e-171 604.4 481 63.6
C06p09220 Brassica napus HOM05D004150 ORTHO05D005087 7.7e-171 604.4 482 62.2
ATR0127G006 Amborella trichopoda HOM05D004150 ORTHO05D005087 1.3e-170 603.6 487 62.0
Prupe.4G158300 Prunus persica HOM05D004150 ORTHO05D005087 1.4e-167 593.6 401 71.6
Potri.001G386700 Populus trichocarpa HOM05D004150 ORTHO05D005087 1.2e-166 590.5 395 71.6
Dinv18386 Davidia involucrata HOM05D004150 ORTHO05D005087 4.4e-166 588.6 391 71.4
TAR627G0919 Trochodendron aralioides HOM05D004150 ORTHO05D005087 1.7e-162 576.6 395 71.1
Duzib213G1096 Durio zibethinus HOM05D004150 ORTHO05D005087 6.6e-162 574.7 439 64.7
ECA240G3777 Erigeron canadensis HOM05D004150 ORTHO05D005087 5.4e-156 555.1 398 67.8
Os01g0729900 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 3.5e-155 552.4 497 55.7
QL08p025853 Quercus lobata HOM05D004150 ORTHO05D005087 2.3e-151 539.7 290 85.5
Zm00001eb154220 Zea mays HOM05D004150 ORTHO05D005087 2.3e-151 539.7 500 55.0
Sabra11G0094900 Salix brachista HOM05D004150 ORTHO05D005087 4.4e-150 535.4 440 62.7
CiPaw.12G111300 Carya illinoinensis HOM05D004150 ORTHO05D005087 7.5e-150 534.6 356 73.0
Hund10457 Selenicereus undatus HOM05D004150 ORTHO05D005087 1.4e-148 530.4 440 59.8
CDE06G0863 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 1.6e-147 526.9 463 57.7
Os05g0530300 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 4.6e-147 525.4 508 52.6
Nn3g21055 Nelumbo nucifera HOM05D004150 ORTHO05D005087 6.8e-143 511.5 399 64.2
HPP92_005189 Vanilla planifolia HOM05D004150 ORTHO05D005087 5.8e-142 508.4 417 60.4
Cpa.g.sc77.46 Carica papaya HOM05D004150 ORTHO05D005087 1.7e-141 506.9 283 81.6
AL1G61960 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 3.0e-138 496.1 306 73.9
Nitab4.5_0024430g0010 Nicotiana tabacum HOM05D004150 ORTHO05D005087 1.5e-137 493.8 287 78.0
unitig_21.g20061 Utricularia gibba HOM05D004150 ORTHO05D005087 7.3e-137 491.5 483 52.0
Zm00001eb361900 Zea mays HOM05D004150 ORTHO05D005087 6.8e-135 485.0 460 54.3
DCAR_013267 Daucus carota HOM05D004150 ORTHO05D005087 2.1e-120 436.8 288 68.1
SMO169G0186 Selaginella moellendorffii HOM05D004150 ORTHO05D005087 1.2e-115 421.0 286 67.5
AagrBONN_evm.TU.Sc2ySwM_362.2802 Anthoceros agrestis HOM05D004150 ORTHO05D005087 4.6e-115 419.1 530 44.5
Os06g0152800 Oryza sativa ssp. japonica HOM05D004150 ORTHO05D005087 8.7e-114 414.8 304 62.2
Mapoly0001s0101 Marchantia polymorpha HOM05D004150 ORTHO05D005087 1.3e-106 391.0 287 64.1
Zm00001eb271010 Zea mays HOM05D004150 ORTHO05D005087 3.3e-105 386.3 304 59.9
SEGI_28417 Sequoiadendron giganteum HOM05D004150 ORTHO05D005087 1.1e-103 381.3 479 42.4
CDE02G2021 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 3.8e-101 372.9 301 61.1
Hma1.2p1_1650F.1_g295710 Hydrangea macrophylla HOM05D004150 ORTHO05D005087 6.5e-101 372.1 301 63.8
Pp3c9_8060 Physcomitrium patens HOM05D004150 ORTHO05D005087 3.2e-100 369.8 537 40.2
Zm00001eb293260 Zea mays HOM05D004150 ORTHO05D005087 3.4e-86 323.2 378 48.4
Haze_09270 Corylus avellana HOM05D004150 ORTHO05D005087 1.9e-68 264.2 205 62.4
Mapoly0030s0045 Marchantia polymorpha HOM05D004150 ORTHO05D005087 6.1e-67 259.2 439 38.5
Haze_09266 Corylus avellana HOM05D004150 ORTHO05D005087 9.1e-63 245.4 191 63.4
Gorai.010G164000 Gossypium raimondii HOM05D004150 ORTHO05D005087 1.0e-53 215.3 179 60.3
QL08p025867 Quercus lobata HOM05D004150 ORTHO05D005087 5.4e-47 193.0 194 54.1
Gohir.D04G018433 Gossypium hirsutum HOM05D004150 ORTHO05D005087 4.4e-41 173.3 95 81.1
Gorai.001G168800 Gossypium raimondii HOM05D004150 ORTHO05D005087 4.9e-40 169.9 92 81.5
Gohir.A02G079101 Gossypium hirsutum HOM05D004150 ORTHO05D005087 6.4e-40 169.5 143 60.1
Gohir.A11G228702 Gossypium hirsutum HOM05D004150 ORTHO05D005087 5.4e-39 166.4 95 76.8
Haze_09267 Corylus avellana HOM05D004150 ORTHO05D005087 6.6e-37 159.5 144 54.2
Haze_09268 Corylus avellana HOM05D004150 ORTHO05D005087 6.6e-37 159.5 144 54.2
AL1G62010 Arabidopsis lyrata HOM05D004150 ORTHO05D005087 2.8e-35 154.1 133 60.2
CDE09G0238 Ceratophyllum demersum HOM05D004150 ORTHO05D005087 4.7e-35 153.3 127 52.0
EL10Ac9g22809 Beta vulgaris HOM05D004150 ORTHO05D005087 6.2e-35 152.9 193 43.5
arahy.Tifrunner.gnm1.ann1.H8RDCT Arachis hypogaea HOM05D004150 ORTHO05D005087 1.8e-34 151.4 87 79.3
arahy.Tifrunner.gnm1.ann1.R67SZW Arachis hypogaea HOM05D004150 ORTHO05D005087 1.8e-34 151.4 87 79.3
VMungo1309G1261 Vigna mungo HOM05D004150 ORTHO05D005087 4.0e-34 150.2 112 64.3
Haze_11864 Corylus avellana HOM05D004150 ORTHO05D005087 2.7e-30 137.5 156 47.4
Actinidia33318 Actinidia chinensis HOM05D004150 ORTHO05D005087 4.6e-30 136.7 179 44.7
BolC5t30531H Brassica oleracea HOM05D004150 ORTHO05D032065 6.6e-29 132.9 156 46.2
Aqoxy1G01962 Aquilegia oxysepala HOM05D004150 ORTHO05D005087 5.6e-28 129.8 140 48.6
VMungo0251G3124 Vigna mungo HOM05D004150 ORTHO05D005087 2.4e-15 87.8 76 57.9
ECA240G1314 Erigeron canadensis HOM05D000062 ORTHO05D000043 8.7e-13 79.3 45 75.6


User provided reference genes

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