Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 1.5e-80 302.8 148 100.0
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 1.1e-14 84.0 100 47.0
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 2.5e-11 72.8 99 46.5
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 3.6e-10 68.9 55 65.5
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 6.2e-10 68.2 83 51.8
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 6.2e-10 68.2 91 46.2
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.8e-09 66.6 45 68.9
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 2.4e-09 66.2 67 56.7
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 2.4e-09 66.2 119 38.7
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 3.1e-09 65.9 112 42.0
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 4.0e-09 65.5 73 50.7
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 5.2e-09 65.1 91 40.7
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 5.2e-09 65.1 113 39.8
Cfa003263 Carpinus fangiana HOM05D008067 ORTHO05D010226 6.8e-09 64.7 77 48.1
Sp3g11420 Schrenkiella parvula HOM05D006736 ORTHO05D008459 6.8e-09 64.7 105 40.0
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 8.9e-09 64.3 57 61.4
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 1.2e-08 63.9 100 43.0
Thhalv10021795m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 1.2e-08 63.9 86 46.5
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 2.0e-08 63.2 96 43.8
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 2.6e-08 62.8 86 46.5
CARHR087850 Cardamine hirsuta HOM05D006736 ORTHO05D008459 3.4e-08 62.4 87 46.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.4e-08 62.4 103 41.7
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 3.4e-08 62.4 115 36.5
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 4.4e-08 62.0 105 41.0
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 4.4e-08 62.0 104 40.4
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 5.8e-08 61.6 106 39.6
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 7.6e-08 61.2 104 38.5
Haze_25708 Corylus avellana HOM05D008067 ORTHO05D010226 7.6e-08 61.2 78 48.7
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 7.6e-08 61.2 107 39.3
AT3G13227 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 9.9e-08 60.8 90 43.3
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 1.3e-07 60.5 48 66.7
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 1.7e-07 60.1 98 39.8
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 1.7e-07 60.1 52 61.5
BcaC01g04005 Brassica carinata HOM05D006736 ORTHO05D008459 2.2e-07 59.7 76 46.1
A03p38090 Brassica napus HOM05D006736 ORTHO05D008459 2.2e-07 59.7 76 46.1
C03p46220 Brassica napus HOM05D006736 ORTHO05D008459 2.2e-07 59.7 76 46.1
BolC3t16893H Brassica oleracea HOM05D006736 ORTHO05D008459 2.2e-07 59.7 76 46.1
BraA03t12962Z Brassica rapa HOM05D006736 ORTHO05D008459 2.2e-07 59.7 76 46.1
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 2.2e-07 59.7 100 40.0
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 2.2e-07 59.7 89 39.3
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.9e-07 59.3 89 41.6
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 2.9e-07 59.3 89 41.6
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 2.9e-07 59.3 42 66.7
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 2.9e-07 59.3 107 34.6
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 2.9e-07 59.3 48 66.7
BcaB04g18747 Brassica carinata HOM05D006736 ORTHO05D008459 3.8e-07 58.9 82 43.9
AL3G25020 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 4.9e-07 58.5 82 43.9
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.9e-07 58.5 98 39.8
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 4.9e-07 58.5 98 39.8
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 6.4e-07 58.2 90 41.1
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 8.4e-07 57.8 109 39.4
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 8.4e-07 57.8 49 65.3
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 8.4e-07 57.8 93 40.9
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 1.1e-06 57.4 79 44.3
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 1.1e-06 57.4 86 44.2
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 1.4e-06 57.0 92 38.0
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.4e-06 57.0 50 62.0
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 1.4e-06 57.0 100 45.0
COL.COLO4_34910 Corchorus olitorius HOM05D008067 ORTHO05D010226 1.9e-06 56.6 84 40.5
Gohir.A01G093700 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.9e-06 56.6 98 40.8
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 1.9e-06 56.6 99 39.4
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 2.4e-06 56.2 90 42.2
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 2.4e-06 56.2 49 59.2
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 2.4e-06 56.2 98 40.8
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 2.4e-06 56.2 98 40.8
Prupe.7G230000 Prunus persica HOM05D008067 ORTHO05D010226 2.4e-06 56.2 62 45.2
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.4e-06 56.2 42 66.7
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 3.2e-06 55.8 79 48.1
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.2e-06 55.8 50 58.0
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 4.2e-06 55.5 50 58.0
Thecc.09G111500 Theobroma cacao HOM05D008067 ORTHO05D010226 4.2e-06 55.5 68 47.1
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 5.4e-06 55.1 88 38.6
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 7.1e-06 54.7 115 33.9
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 7.1e-06 54.7 43 65.1
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 7.1e-06 54.7 111 36.0
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 9.2e-06 54.3 57 52.6
MD02G1048100 Malus domestica HOM05D008067 ORTHO05D010226 9.2e-06 54.3 50 50.0
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 9.2e-06 54.3 118 36.4
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 9.2e-06 54.3 84 41.7


User provided reference genes

Program Settings