Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0800 Punica granatum HOM05D003815 ORTHO05D004580 4.6e-169 597.8 304 100.0
PGR004G1265 Punica granatum HOM05D003815 ORTHO05D004580 1.1e-157 560.1 304 93.4
Eucgr.F01118 Eucalyptus grandis HOM05D003815 ORTHO05D004580 4.2e-146 521.5 307 85.7
Cfa020596 Carpinus fangiana HOM05D003815 ORTHO05D004580 1.2e-145 520.0 304 85.5
Dinv04311 Davidia involucrata HOM05D003815 ORTHO05D004580 3.6e-145 518.5 305 85.6
QL08p021520 Quercus lobata HOM05D003815 ORTHO05D004580 7.9e-145 517.3 299 86.6
QL05p086088 Quercus lobata HOM05D003815 ORTHO05D004580 2.3e-144 515.8 299 86.6
TAR629G1246 Trochodendron aralioides HOM05D003815 ORTHO05D004580 8.8e-144 513.8 305 85.6
Thecc.07G083700 Theobroma cacao HOM05D003815 ORTHO05D004580 2.0e-143 512.7 304 84.9
PGSC0003DMG400025035 Solanum tuberosum HOM05D003815 ORTHO05D004580 3.3e-143 511.9 292 87.3
CSS0007181 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 4.3e-143 511.5 306 82.7
Gorai.009G389800 Gossypium raimondii HOM05D003815 ORTHO05D004580 1.3e-142 510.0 301 85.7
Oeu005415.1 Olea europaea HOM05D003815 ORTHO05D004580 1.3e-142 510.0 302 84.4
Gohir.A04G029700 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.2e-142 509.2 301 85.0
Gohir.D05G357300 Gossypium hirsutum HOM05D003815 ORTHO05D004580 2.2e-142 509.2 301 85.7
A08p01870 Brassica napus HOM05D003815 ORTHO05D004580 2.8e-142 508.8 290 86.2
Ciclev10009061m.g Citrus clementina HOM05D003815 ORTHO05D004580 2.8e-142 508.8 296 85.8
Sopen10g002890 Solanum pennellii HOM05D003815 ORTHO05D004580 2.8e-142 508.8 281 89.3
Manes.03G110800 Manihot esculenta HOM05D003815 ORTHO05D004580 3.7e-142 508.4 301 85.7
Nitab4.5_0001551g0080 Nicotiana tabacum HOM05D003815 ORTHO05D004580 3.7e-142 508.4 281 88.3
GSVIVG01014351001 Vitis vinifera HOM05D003815 ORTHO05D004580 4.8e-142 508.1 302 84.4
Potri.011G120100 Populus trichocarpa HOM05D003815 ORTHO05D004580 8.2e-142 507.3 301 84.7
Sabra16G0263000 Salix brachista HOM05D003815 ORTHO05D004580 1.1e-141 506.9 301 83.7
BcaC01g01350 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-141 506.1 289 85.8
C03p90950 Brassica napus HOM05D003815 ORTHO05D004580 1.8e-141 506.1 289 85.8
BolC3t21419H Brassica oleracea HOM05D003815 ORTHO05D004580 1.8e-141 506.1 289 85.8
Thhalv10011698m.g Eutrema salsugineum HOM05D003815 ORTHO05D004580 1.8e-141 506.1 289 85.8
Atru.chr2.2652 Acer truncatum HOM05D003815 ORTHO05D004580 6.9e-141 504.2 304 83.9
Nitab4.5_0002383g0120 Nicotiana tabacum HOM05D003815 ORTHO05D004580 6.9e-141 504.2 302 84.1
Solyc10g006980.3 Solanum lycopersicum HOM05D003815 ORTHO05D004580 6.9e-141 504.2 283 88.7
BraA08t32239Z Brassica rapa HOM05D003815 ORTHO05D004580 9.1e-141 503.8 289 85.5
Peaxi162Scf00027g02616 Petunia axillaris HOM05D003815 ORTHO05D004580 9.1e-141 503.8 301 84.1
TWI38G0676 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 9.1e-141 503.8 294 84.7
Duzib170G0119 Durio zibethinus HOM05D003815 ORTHO05D004580 1.5e-140 503.1 301 84.1
Nitab4.5_0003688g0100 Nicotiana tabacum HOM05D003815 ORTHO05D004580 2.0e-140 502.7 280 87.5
AL1G61340 Arabidopsis lyrata HOM05D003815 ORTHO05D004580 2.6e-140 502.3 301 83.7
CAN.G162.63 Capsicum annuum HOM05D003815 ORTHO05D004580 2.6e-140 502.3 294 85.0
CSS0031480 Camellia sinensis var. sinensis HOM05D003815 ORTHO05D004580 3.4e-140 501.9 310 81.0
BcaB04g17128 Brassica carinata HOM05D003815 ORTHO05D004580 4.5e-140 501.5 287 85.4
Glyma.12G151500 Glycine max HOM05D003815 ORTHO05D004580 4.5e-140 501.5 284 87.3
THA.LOC104818073 Tarenaya hassleriana HOM05D003815 ORTHO05D004580 5.9e-140 501.1 296 83.8
vmacro11847 Vaccinium macrocarpon HOM05D003815 ORTHO05D004580 1.0e-139 500.4 306 82.0
AT1G53000 Arabidopsis thaliana HOM05D003815 ORTHO05D004580 1.3e-139 500.0 301 82.7
Carub.0001s4215 Capsella rubella HOM05D003815 ORTHO05D004580 1.3e-139 500.0 290 85.2
Sabra11G0104500 Salix brachista HOM05D003815 ORTHO05D004580 1.3e-139 500.0 301 83.4
CARHR043220 Cardamine hirsuta HOM05D003815 ORTHO05D004580 2.2e-139 499.2 281 86.5
Sp1g39560 Schrenkiella parvula HOM05D003815 ORTHO05D004580 2.2e-139 499.2 301 82.7
A05p18730 Brassica napus HOM05D003815 ORTHO05D004580 2.9e-139 498.8 288 85.1
DCAR_014380 Daucus carota HOM05D003815 ORTHO05D004580 2.9e-139 498.8 292 85.3
BcaB02g10966 Brassica carinata HOM05D003815 ORTHO05D004580 3.8e-139 498.4 290 84.1
COL.COLO4_09397 Corchorus olitorius HOM05D003815 ORTHO05D004580 5.0e-139 498.0 297 83.5
MD03G1226400 Malus domestica HOM05D003815 ORTHO05D004580 8.5e-139 497.3 290 86.6
Nitab4.5_0000207g0160 Nicotiana tabacum HOM05D003815 ORTHO05D004580 8.5e-139 497.3 301 83.1
MELO3C016515.2 Cucumis melo HOM05D003815 ORTHO05D004580 1.1e-138 496.9 301 83.7
Phvul.011G157900 Phaseolus vulgaris HOM05D003815 ORTHO05D004580 1.4e-138 496.5 286 85.7
Glyma.06G245100 Glycine max HOM05D003815 ORTHO05D004580 3.2e-138 495.4 307 81.8
Medtr1g057850 Medicago truncatula HOM05D003815 ORTHO05D004580 4.2e-138 495.0 281 85.8
Lalb_Chr03g0030621 Lupinus albus HOM05D003815 ORTHO05D004580 5.5e-138 494.6 286 85.0
Prupe.4G183000 Prunus persica HOM05D003815 ORTHO05D004580 5.5e-138 494.6 304 82.6
TWI38G0767 Tripterygium wilfordii HOM05D003815 ORTHO05D004580 5.5e-138 494.6 304 82.6
CsaV3_3G006290 Cucumis sativus L. HOM05D003815 ORTHO05D004580 9.4e-138 493.8 301 82.4
MD11G1244700 Malus domestica HOM05D003815 ORTHO05D004580 9.4e-138 493.8 296 84.5
Aa31LG10G2090 Aethionema arabicum HOM05D003815 ORTHO05D004580 2.7e-137 492.3 301 82.4
MSTRG.15225 Avicennia marina HOM05D003815 ORTHO05D004580 2.7e-137 492.3 302 81.1
EL10Ac4g08152 Beta vulgaris HOM05D003815 ORTHO05D004580 2.7e-137 492.3 305 81.6
C06p14350 Brassica napus HOM05D003815 ORTHO05D004580 3.6e-137 491.9 284 85.6
Potri.001G400900 Populus trichocarpa HOM05D003815 ORTHO05D004580 1.8e-136 489.6 288 84.0
Migut.M00813 Erythranthe guttata HOM05D003815 ORTHO05D004580 3.0e-136 488.8 300 81.0
MBI07_g32649_MAGBIO Magnolia biondii HOM05D003815 ORTHO05D004580 3.9e-136 488.4 301 81.7
RcHm_v2.0_Chr5g0033991 Rosa chinensis HOM05D003815 ORTHO05D004580 3.9e-136 488.4 307 80.5
AUR62029379 Chenopodium quinoa HOM05D003815 ORTHO05D004580 5.1e-136 488.0 305 80.7
Lj3g0026961 Lotus japonicus HOM05D003815 ORTHO05D004580 5.1e-136 488.0 281 85.8
BraA05t20769Z Brassica rapa HOM05D003815 ORTHO05D004580 6.7e-136 487.6 278 85.3
FAN16G0735 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.8e-136 487.3 284 85.2
Nn1g06558 Nelumbo nucifera HOM05D003815 ORTHO05D004580 8.8e-136 487.3 307 79.8
CAN.G1110.56 Capsicum annuum HOM05D003815 ORTHO05D004580 1.1e-135 486.9 265 88.7
Nn1g04083 Nelumbo nucifera HOM05D003815 ORTHO05D004580 1.5e-135 486.5 305 80.7
Lj3g0002488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.0e-135 486.1 303 81.5
PSO541G6182 Papaver somniferum HOM05D003815 ORTHO05D004580 2.6e-135 485.7 289 84.1
Sc07g0002580 Simmondsia chinensis HOM05D003815 ORTHO05D004580 4.4e-135 485.0 303 80.9
FAN11G0414 Fragaria x ananassa HOM05D003815 ORTHO05D004580 5.7e-135 484.6 284 84.5
arahy.Tifrunner.gnm1.ann1.46T9HD Arachis hypogaea HOM05D003815 ORTHO05D004580 7.4e-135 484.2 311 79.7
PSO675G7971 Papaver somniferum HOM05D003815 ORTHO05D004580 9.7e-135 483.8 289 83.7
TPR.G454 Trifolium pratense HOM05D003815 ORTHO05D004580 9.7e-135 483.8 302 81.8
Hund02213 Selenicereus undatus HOM05D003815 ORTHO05D004580 1.7e-134 483.0 305 82.0
Psat5g229040 Pisum sativum HOM05D003815 ORTHO05D004580 2.2e-134 482.6 282 84.0
Sed0012787 Sechium edule HOM05D003815 ORTHO05D004580 4.8e-134 481.5 301 82.4
Lalb_Chr01g0006511 Lupinus albus HOM05D003815 ORTHO05D004580 8.2e-134 480.7 301 80.1
ECA238G0528 Erigeron canadensis HOM05D003815 ORTHO05D004580 2.4e-133 479.2 284 84.2
Actinidia01882 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.1e-133 478.8 300 81.0
Aqoxy1G02432 Aquilegia oxysepala HOM05D003815 ORTHO05D004580 4.1e-133 478.4 304 80.3
SGA_v2.0_scaffold73G24269 Striga asiatica HOM05D003815 ORTHO05D004580 7.0e-133 477.6 300 78.7
Cc05_g12120 Coffea canephora HOM05D003815 ORTHO05D004580 2.6e-132 475.7 302 81.1
GSVIVG01005203001 Vitis vinifera HOM05D003815 ORTHO05D004580 2.6e-132 475.7 290 82.8
CDE10G1101 Ceratophyllum demersum HOM05D003815 ORTHO05D004580 7.7e-132 474.2 288 83.7
unitig_899.g15563 Utricularia gibba HOM05D003815 ORTHO05D004580 1.7e-131 473.0 291 79.7
FAN21G2274 Fragaria x ananassa HOM05D003815 ORTHO05D004580 2.2e-131 472.6 283 84.1
Cfa000456 Carpinus fangiana HOM05D003815 ORTHO05D004580 5.0e-131 471.5 305 80.3
HanXRQChr11g0328431 Helianthus annuus HOM05D003815 ORTHO05D004580 5.0e-131 471.5 304 79.6
ClCG10G006920 Citrullus lanatus HOM05D003815 ORTHO05D004580 6.5e-131 471.1 314 78.7
Peaxi162Scf00069g01341 Petunia axillaris HOM05D003815 ORTHO05D004580 8.5e-131 470.7 287 82.9
Ah.06g184010 Amaranthus hybridus HOM05D003815 ORTHO05D004580 1.5e-130 469.9 298 81.2
Duzib213G0989 Durio zibethinus HOM05D003815 ORTHO05D004580 2.5e-130 469.2 304 80.3
Lsat_1_v5_gn_7_105160 Lactuca sativa HOM05D003815 ORTHO05D004580 4.2e-130 468.4 293 79.5
RcHm_v2.0_Chr5g0008351 Rosa chinensis HOM05D003815 ORTHO05D004580 6.1e-129 464.5 294 81.0
CiPaw.09G059900 Carya illinoinensis HOM05D003815 ORTHO05D004580 1.4e-128 463.4 280 82.5
ATR0605G309 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.2e-128 461.5 289 79.6
Haze_09417 Corylus avellana HOM05D003815 ORTHO05D004580 1.1e-127 460.3 388 66.2
Lsat_1_v5_gn_7_21261 Lactuca sativa HOM05D003815 ORTHO05D004580 1.1e-127 460.3 284 81.3
QL05p040244 Quercus lobata HOM05D003815 ORTHO05D004580 4.4e-127 458.4 289 79.6
SEGI_36185 Sequoiadendron giganteum HOM05D003815 ORTHO05D004580 1.7e-126 456.4 289 77.9
Lj1A1206T62 Lonicera japonica HOM05D003815 ORTHO05D004580 2.8e-126 455.7 300 77.7
arahy.Tifrunner.gnm1.ann1.NKF69P Arachis hypogaea HOM05D003815 ORTHO05D004580 4.8e-126 454.9 286 80.1
Actinidia09679 Actinidia chinensis HOM05D003815 ORTHO05D004580 1.8e-125 453.0 276 82.2
AUR62034260 Chenopodium quinoa HOM05D003815 ORTHO05D004580 1.8e-125 453.0 291 79.0
HPP92_021319 Vanilla planifolia HOM05D003815 ORTHO05D004580 1.8e-125 453.0 305 76.1
Zm00001eb343610 Zea mays HOM05D003815 ORTHO05D004580 9.1e-125 450.7 301 75.1
Lj8A54T73 Lonicera japonica HOM05D003815 ORTHO05D004580 7.7e-124 447.6 329 71.7
SalBow8G0761 Salvia bowleyana HOM05D003815 ORTHO05D004580 1.3e-123 446.8 270 81.5
Os05g0561500 Oryza sativa ssp. japonica HOM05D003815 ORTHO05D004580 3.2e-122 442.2 301 75.7
BcaC08g44025 Brassica carinata HOM05D003815 ORTHO05D004580 6.3e-118 427.9 278 77.7
FAN25G2093 Fragaria x ananassa HOM05D003815 ORTHO05D004580 8.3e-118 427.6 276 79.7
SGA_v2.0_scaffold34G13823 Striga asiatica HOM05D003815 ORTHO05D004580 4.1e-117 425.2 263 81.7
Haze_06461 Corylus avellana HOM05D003815 ORTHO05D004580 3.8e-115 418.7 280 77.5
CiPaw.11G168500 Carya illinoinensis HOM05D003815 ORTHO05D004580 8.5e-115 417.5 221 91.4
Prupe.4G047000 Prunus persica HOM05D003815 ORTHO05D004580 9.4e-114 414.1 262 79.8
Rhsim06G0197600 Rhododendron simsii HOM05D003815 ORTHO05D004580 1.6e-113 413.3 221 90.0
Pp3c7_2170 Physcomitrium patens HOM05D003815 ORTHO05D004580 3.0e-112 409.1 298 68.1
Ca_12190_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.3e-110 403.7 218 89.0
Ca_30578_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 1.3e-110 403.7 218 89.0
AagrBONN_evm.TU.Sc2ySwM_344.3202 Anthoceros agrestis HOM05D003815 ORTHO05D004580 3.3e-106 389.0 250 74.4
SMO196G0043 Selaginella moellendorffii HOM05D003815 ORTHO05D004580 1.6e-105 386.7 253 74.3
Mapoly0026s0027 Marchantia polymorpha HOM05D003815 ORTHO05D004580 2.3e-104 382.9 274 67.9
Actinidia12813 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.6e-103 379.4 311 67.5
Dinv40557 Davidia involucrata HOM05D003815 ORTHO05D004580 4.1e-101 372.1 200 89.5
FvH4_3g20180 Fragaria vesca HOM05D003815 ORTHO05D004580 3.9e-99 365.5 242 77.7
CBR_g31446 Chara braunii HOM05D003815 ORTHO05D004580 7.3e-98 361.3 250 68.8
PGSC0003DMG402012419 Solanum tuberosum HOM05D003815 ORTHO05D004580 4.7e-97 358.6 215 84.2
Duzib064G0003 Durio zibethinus HOM05D003815 ORTHO05D004580 3.2e-93 345.9 182 93.4
Cpa.g.sc80.53 Carica papaya HOM05D003815 ORTHO05D004580 1.0e-91 340.9 182 90.7
Oeu060549.1 Olea europaea HOM05D003815 ORTHO05D004580 4.7e-89 332.0 208 80.8
Duzib064G0004 Durio zibethinus HOM05D003815 ORTHO05D004580 2.7e-84 316.2 174 89.1
PSO017G1411 Papaver somniferum HOM05D003815 ORTHO05D004580 1.2e-81 307.4 190 79.5
Eucgr.F01114 Eucalyptus grandis HOM05D003815 ORTHO05D004580 6.2e-81 305.1 221 74.7
Lj3g0013472 Lotus japonicus HOM05D003815 ORTHO05D004580 3.6e-73 279.3 152 89.5
AagrBONN_evm.TU.Sc2ySwM_340.276 Anthoceros agrestis HOM05D003815 ORTHO05D004580 7.3e-66 255.0 194 66.5
ATR0730G188 Amborella trichopoda HOM05D003815 ORTHO05D004580 5.8e-63 245.4 146 80.8
BcaB07g33367 Brassica carinata HOM05D003815 ORTHO05D004580 3.2e-61 239.6 209 63.6
Pp3c11_23350 Physcomitrium patens HOM05D003815 ORTHO05D004580 4.0e-48 196.1 246 48.4
C07p00250 Brassica napus HOM05D003815 ORTHO05D004580 6.9e-48 195.3 119 75.6
Haze_06417 Corylus avellana HOM05D003815 ORTHO05D004580 3.8e-46 189.5 158 63.9
Haze_06421 Corylus avellana HOM05D003815 ORTHO05D004580 1.9e-45 187.2 136 72.1
Lj8A156T78 Lonicera japonica HOM05D003815 ORTHO05D004580 3.0e-43 179.9 177 57.6
BolC7t40476H Brassica oleracea HOM05D003815 ORTHO05D004580 4.8e-41 172.6 105 76.2
Hma1.2p1_0000F.1_g000160 Hydrangea macrophylla HOM05D003815 ORTHO05D004580 3.5e-36 156.4 86 82.6
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 1.8e-35 154.1 96 74.0
Actinidia05634 Actinidia chinensis HOM05D003815 ORTHO05D004580 3.4e-31 139.8 83 81.9
MCO07G610 Micromonas commoda HOM05D003815 ORTHO05D004580 8.5e-30 135.2 306 32.4
Lj3g0015923 Lotus japonicus HOM05D003815 ORTHO05D004580 3.0e-27 126.7 191 45.0
BolC6t36614H Brassica oleracea HOM05D003815 ORTHO05D004580 1.5e-26 124.4 85 75.3
BcaC08g43686 Brassica carinata HOM05D003815 ORTHO05D004580 9.7e-26 121.7 66 89.4
BolC6t36186H Brassica oleracea HOM05D003815 ORTHO05D004580 9.7e-26 121.7 66 89.4
CBR_g29613 Chara braunii HOM05D003815 ORTHO05D004580 6.3e-25 119.0 189 39.2
Sopen05g017440 Solanum pennellii HOM05D003815 ORTHO05D004580 7.4e-18 95.5 158 42.4
Sopen05g018740 Solanum pennellii HOM05D000002 ORTHO05D000001 8.2e-17 92.0 85 57.6
PSO017G7235 Papaver somniferum HOM05D003815 ORTHO05D004580 1.8e-16 90.9 53 79.2
Ca_12192_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.4e-16 90.5 63 73.0
Ca_30580_v3 Cicer arietinum L. HOM05D003815 ORTHO05D004580 2.4e-16 90.5 63 73.0
Oeu044430.1 Olea europaea HOM05D003815 ORTHO05D004580 8.5e-14 82.0 79 54.4
Lj8C156T6 Lonicera japonica HOM05D003815 ORTHO05D004580 9.4e-13 78.6 82 59.8
BolC9t59438H Brassica oleracea HOM05D003815 ORTHO05D004580 2.1e-12 77.4 92 47.8
ATR0730G237 Amborella trichopoda HOM05D003815 ORTHO05D004580 8.0e-12 75.5 93 54.8
Solyc04g079020.4 Solanum lycopersicum HOM05D003815 ORTHO05D004580 3.0e-11 73.6 110 40.9
C09p66180 Brassica napus HOM05D003815 ORTHO05D004580 6.7e-11 72.4 103 40.8
COL.COLO4_36023 Corchorus olitorius HOM05D006127 ORTHO05D161883 4.4e-10 69.7 60 61.7
COL.COLO4_31682 Corchorus olitorius HOM05D000007 ORTHO05D000017 2.4e-08 63.9 43 74.4
Actinidia16545 Actinidia chinensis HOM05D003815 ORTHO05D056144 1.6e-07 61.2 42 73.8
Actinidia24031 Actinidia chinensis HOM05D003815 ORTHO05D004580 2.0e-07 60.8 34 79.4
Oeu026881.1 Olea europaea HOM05D001611 ORTHO05D001464 2.0e-07 60.8 57 50.9
Lj2g0024488 Lotus japonicus HOM05D003815 ORTHO05D004580 2.2e-06 57.4 38 73.7


User provided reference genes

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