Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0764 Punica granatum HOM05D005211 ORTHO05D006148 1.3e-85 319.7 167 100.0
TAR365G0119 Trochodendron aralioides HOM05D005211 ORTHO05D006148 4.8e-27 125.2 156 50.0
CSS0012153 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 8.2e-27 124.4 150 50.7
CSS0028586 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 8.2e-27 124.4 150 50.7
FAN15G0641 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.2e-24 116.3 165 47.3
TAR636G0814 Trochodendron aralioides HOM05D005211 ORTHO05D006148 2.2e-24 116.3 152 47.4
Nn1g08305 Nelumbo nucifera HOM05D005211 ORTHO05D006148 2.9e-24 115.9 149 49.7
EL10Ac5g10623 Beta vulgaris HOM05D005211 ORTHO05D006148 6.5e-24 114.8 164 50.0
FAN27G1389 Fragaria x ananassa HOM05D005211 ORTHO05D006148 8.5e-24 114.4 165 46.7
Eucgr.H00724 Eucalyptus grandis HOM05D005211 ORTHO05D006148 1.1e-23 114.0 157 47.8
Manes.13G054600 Manihot esculenta HOM05D005211 ORTHO05D006148 1.9e-23 113.2 163 46.6
RcHm_v2.0_Chr6g0282781 Rosa chinensis HOM05D005211 ORTHO05D006148 2.1e-22 109.8 160 46.2
Duzib138G1875 Durio zibethinus HOM05D005211 ORTHO05D006148 2.7e-22 109.4 175 45.7
MD05G1158800 Malus domestica HOM05D005211 ORTHO05D006148 3.6e-22 109.0 158 47.5
QL10p044103 Quercus lobata HOM05D005211 ORTHO05D006148 3.6e-22 109.0 155 43.2
Cpa.g.sc8.70 Carica papaya HOM05D005211 ORTHO05D006148 6.1e-22 108.2 171 45.6
Duzib133G1390 Durio zibethinus HOM05D005211 ORTHO05D006148 6.1e-22 108.2 166 45.8
PGR142G0694 Punica granatum HOM05D005211 ORTHO05D006148 6.1e-22 108.2 165 45.5
CiPaw.01G108100 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.0e-21 107.5 149 45.0
CDE04G3135 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.0e-21 105.9 154 45.5
CDE07G0882 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 3.0e-21 105.9 154 44.8
COL.COLO4_26568 Corchorus olitorius HOM05D005211 ORTHO05D006148 3.0e-21 105.9 163 46.0
Prupe.8G190100 Prunus persica HOM05D005211 ORTHO05D006148 3.0e-21 105.9 148 47.3
Gohir.D07G203100 Gossypium hirsutum HOM05D005211 ORTHO05D006148 5.2e-21 105.1 158 46.8
Duzib211G0461 Durio zibethinus HOM05D005211 ORTHO05D006148 6.7e-21 104.8 171 47.4
Gorai.001G228500 Gossypium raimondii HOM05D005211 ORTHO05D006148 6.7e-21 104.8 158 46.8
Gohir.A07G196700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 8.8e-21 104.4 158 46.2
Lj1P101T27 Lonicera japonica HOM05D005211 ORTHO05D006148 8.8e-21 104.4 157 43.9
FAN24G3081 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.1e-20 104.0 161 46.0
FvH4_2g17750 Fragaria vesca HOM05D005211 ORTHO05D006148 1.5e-20 103.6 161 46.0
TAR633G2277 Trochodendron aralioides HOM05D005211 ORTHO05D006148 1.5e-20 103.6 155 47.7
Sabra14G0113200 Salix brachista HOM05D005211 ORTHO05D006148 4.4e-20 102.1 155 41.3
FAN07G0144 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.7e-20 101.7 154 45.5
FAN22G0070 Fragaria x ananassa HOM05D005211 ORTHO05D006148 5.7e-20 101.7 157 43.9
Eucgr.H00442 Eucalyptus grandis HOM05D005211 ORTHO05D006148 7.4e-20 101.3 149 41.6
Potri.002G232500 Populus trichocarpa HOM05D005211 ORTHO05D006148 9.7e-20 100.9 148 45.3
Aqoxy2G03955 Aquilegia oxysepala HOM05D005211 ORTHO05D006148 1.3e-19 100.5 158 41.8
Manes.11G114000 Manihot esculenta HOM05D005211 ORTHO05D006148 1.3e-19 100.5 157 43.9
Sc17g0001650 Simmondsia chinensis HOM05D005211 ORTHO05D006148 1.3e-19 100.5 150 42.7
Sabra02G0177300 Salix brachista HOM05D005211 ORTHO05D006148 2.2e-19 99.8 153 46.4
CiPaw.02G059600 Carya illinoinensis HOM05D005211 ORTHO05D006148 2.8e-19 99.4 152 44.1
Potri.014G149800 Populus trichocarpa HOM05D005211 ORTHO05D006148 2.8e-19 99.4 152 40.1
Prupe.1G178500 Prunus persica HOM05D005211 ORTHO05D006148 2.8e-19 99.4 149 40.3
MD05G1158700 Malus domestica HOM05D005211 ORTHO05D006148 3.7e-19 99.0 153 44.4
TWI36G1602 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 3.7e-19 99.0 155 44.5
Actinidia23357 Actinidia chinensis HOM05D005211 ORTHO05D006148 4.8e-19 98.6 157 43.3
MD10G1151700 Malus domestica HOM05D005211 ORTHO05D006148 6.3e-19 98.2 153 43.1
CiPaw.13G055500 Carya illinoinensis HOM05D005211 ORTHO05D006148 8.2e-19 97.8 155 46.5
FAN12G3367 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.1e-18 97.4 153 44.4
Gohir.A11G142700 Gossypium hirsutum HOM05D005211 ORTHO05D006148 1.4e-18 97.1 171 42.7
CiPaw.14G044000 Carya illinoinensis HOM05D005211 ORTHO05D006148 1.8e-18 96.7 153 42.5
Oeu003658.1 Olea europaea HOM05D005211 ORTHO05D006148 1.8e-18 96.7 154 40.3
FAN12G0052 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.1e-18 95.9 153 43.8
RcHm_v2.0_Chr4g0409781 Rosa chinensis HOM05D005211 ORTHO05D006148 4.1e-18 95.5 144 45.1
RcHm_v2.0_Chr6g0282791 Rosa chinensis HOM05D005211 ORTHO05D006148 4.1e-18 95.5 163 40.5
QL93p0263_0042 Quercus lobata HOM05D005211 ORTHO05D006148 9.1e-18 94.4 157 45.2
vmacro02818 Vaccinium macrocarpon HOM05D005211 ORTHO05D006148 9.1e-18 94.4 149 44.3
Cfa008551 Carpinus fangiana HOM05D005211 ORTHO05D006148 1.2e-17 94.0 149 40.9
Dinv28809 Davidia involucrata HOM05D005211 ORTHO05D006148 2.0e-17 93.2 148 44.6
TWI18G0981 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 2.0e-17 93.2 153 43.1
CANSAT01G0934 Cannabis sativa HOM05D005211 ORTHO05D006148 2.6e-17 92.8 163 41.1
Cc01_g16110 Coffea canephora HOM05D005211 ORTHO05D006148 2.6e-17 92.8 150 43.3
Thecc.01G210700 Theobroma cacao HOM05D005211 ORTHO05D006148 2.6e-17 92.8 151 46.4
FAN24G0649 Fragaria x ananassa HOM05D005211 ORTHO05D006148 4.5e-17 92.0 164 40.9
FAN27G2625 Fragaria x ananassa HOM05D005211 ORTHO05D006148 1.0e-16 90.9 164 40.2
Hma1.2p1_0959F.1_g241620 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 1.0e-16 90.9 118 45.8
Oeu013415.1 Olea europaea HOM05D005211 ORTHO05D006148 1.0e-16 90.9 166 41.0
Oeu057829.1 Olea europaea HOM05D005211 ORTHO05D006148 1.3e-16 90.5 150 41.3
MELO3C026134.2 Cucumis melo HOM05D005211 ORTHO05D006148 2.2e-16 89.7 154 41.6
Hma1.2p1_0412F.1_g147140 Hydrangea macrophylla HOM05D005211 ORTHO05D006148 2.2e-16 89.7 118 48.3
Lj2P1117T13 Lonicera japonica HOM05D005211 ORTHO05D006148 2.2e-16 89.7 162 40.7
Gorai.007G159800 Gossypium raimondii HOM05D005211 ORTHO05D006148 2.9e-16 89.4 178 41.6
Gohir.D11G149000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 3.8e-16 89.0 173 41.0
Manes.12G059000 Manihot esculenta HOM05D005211 ORTHO05D006148 3.8e-16 89.0 138 47.8
Sed0015684 Sechium edule HOM05D005211 ORTHO05D006148 5.0e-16 88.6 169 37.3
Prupe.8G190000 Prunus persica HOM05D005211 ORTHO05D006148 6.5e-16 88.2 139 43.2
CDE02G4090 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 8.5e-16 87.8 150 46.0
AUR62028696 Chenopodium quinoa HOM05D005211 ORTHO05D006148 8.5e-16 87.8 142 43.0
MBI07_g35368_MAGBIO Magnolia biondii HOM05D005211 ORTHO05D006148 1.5e-15 87.0 143 44.8
MD10G1151600 Malus domestica HOM05D005211 ORTHO05D006148 1.5e-15 87.0 165 42.4
Haze_11077 Corylus avellana HOM05D005211 ORTHO05D006148 3.2e-15 85.9 135 41.5
Ciclev10016996m.g Citrus clementina HOM05D005211 ORTHO05D006148 1.2e-14 84.0 174 39.1
QL09p046680 Quercus lobata HOM05D005211 ORTHO05D006148 1.6e-14 83.6 153 43.1
SGA_v2.0_scaffold77G25295 Striga asiatica HOM05D005211 ORTHO05D006148 1.6e-14 83.6 152 40.1
DCAR_004769 Daucus carota HOM05D005211 ORTHO05D006148 2.1e-14 83.2 151 39.1
FvH4_2g17760 Fragaria vesca HOM05D005211 ORTHO05D006148 2.7e-14 82.8 149 42.3
Lsat_1_v5_gn_5_178301 Lactuca sativa HOM05D005211 ORTHO05D006148 2.7e-14 82.8 167 38.9
Rhsim13G0052900 Rhododendron simsii HOM05D005211 ORTHO05D006148 2.7e-14 82.8 116 49.1
AL4G41710 Arabidopsis lyrata HOM05D005211 ORTHO05D006148 8.0e-14 81.3 161 36.0
PGSC0003DMG400005560 Solanum tuberosum HOM05D005211 ORTHO05D006148 8.0e-14 81.3 153 38.6
ClCG08G003780 Citrullus lanatus HOM05D005211 ORTHO05D006148 1.0e-13 80.9 154 36.4
CDE09G1368 Ceratophyllum demersum HOM05D005211 ORTHO05D006148 1.4e-13 80.5 145 46.9
Actinidia30014 Actinidia chinensis HOM05D005211 ORTHO05D006148 2.3e-13 79.7 99 51.5
Migut.D00738 Erythranthe guttata HOM05D005211 ORTHO05D006148 3.0e-13 79.3 159 38.4
Thhalv10017615m.g Eutrema salsugineum HOM05D005211 ORTHO05D006148 3.0e-13 79.3 147 36.7
CARHR138130 Cardamine hirsuta HOM05D005211 ORTHO05D006148 1.2e-12 77.4 163 33.7
PSO675G5714 Papaver somniferum HOM05D005211 ORTHO05D006148 1.2e-12 77.4 177 38.4
CANSAT78G0009 Cannabis sativa HOM05D005211 ORTHO05D006148 1.5e-12 77.0 120 38.3
Carub.0004s2554 Capsella rubella HOM05D005211 ORTHO05D006148 2.0e-12 76.6 161 36.0
FAN22G0040 Fragaria x ananassa HOM05D005211 ORTHO05D006148 2.6e-12 76.3 107 47.7
AT2G43060 Arabidopsis thaliana HOM05D005211 ORTHO05D006148 3.3e-12 75.9 162 35.2
Sp4g25190 Schrenkiella parvula HOM05D005211 ORTHO05D006148 3.3e-12 75.9 148 35.1
Gohir.D07G167400 Gossypium hirsutum HOM05D005211 ORTHO05D006148 4.4e-12 75.5 104 48.1
THA.LOC104802290 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 4.4e-12 75.5 150 37.3
TWI63G1319 Tripterygium wilfordii HOM05D005211 ORTHO05D006148 4.4e-12 75.5 155 34.8
HPP92_023344 Vanilla planifolia HOM05D005211 ORTHO05D006148 5.7e-12 75.1 139 41.7
BcaB06g29284 Brassica carinata HOM05D005211 ORTHO05D006148 7.5e-12 74.7 148 39.9
BcaB06g29285 Brassica carinata HOM05D005211 ORTHO05D006148 7.5e-12 74.7 148 39.9
Migut.N00665 Erythranthe guttata HOM05D005211 ORTHO05D006148 9.7e-12 74.3 149 36.2
ECA247G2119 Erigeron canadensis HOM05D005211 ORTHO05D006148 1.3e-11 73.9 116 45.7
Dinv10443 Davidia involucrata HOM05D005211 ORTHO05D006148 2.8e-11 72.8 167 38.9
BcaNung03535 Brassica carinata HOM05D005211 ORTHO05D006148 3.7e-11 72.4 148 33.8
Gohir.A07G159000 Gossypium hirsutum HOM05D005211 ORTHO05D006148 6.3e-11 71.6 154 35.7
HanXRQChr01g0007251 Helianthus annuus HOM05D005211 ORTHO05D006148 6.3e-11 71.6 155 35.5
CsaV3_6G003020 Cucumis sativus L. HOM05D005211 ORTHO05D006148 8.2e-11 71.2 113 40.7
Gorai.N002800 Gossypium raimondii HOM05D005211 ORTHO05D006148 1.1e-10 70.9 154 35.1
THA.LOC104803428 Tarenaya hassleriana HOM05D005211 ORTHO05D006148 1.4e-10 70.5 160 33.1
ATR0686G247 Amborella trichopoda HOM05D005211 ORTHO05D006148 1.8e-10 70.1 152 36.8
BNapus_Darmor_BZH_scaffold_64p00090 Brassica napus HOM05D005211 ORTHO05D006148 1.8e-10 70.1 148 35.8
BraA04t18707Z Brassica rapa HOM05D005211 ORTHO05D006148 1.8e-10 70.1 148 35.8
MSTRG.18497 Avicennia marina HOM05D005211 ORTHO05D006148 3.1e-10 69.3 144 35.4
Aa31LG1G24830 Aethionema arabicum HOM05D005211 ORTHO05D006148 4.1e-10 68.9 158 36.7
Oeu049588.1 Olea europaea HOM05D005211 ORTHO05D006148 5.3e-10 68.6 106 45.3
CSS0032639 Camellia sinensis var. sinensis HOM05D005211 ORTHO05D006148 2.7e-09 66.2 94 50.0
Solyc12g042010.1 Solanum lycopersicum HOM05D005211 ORTHO05D006148 2.7e-09 66.2 150 34.7
unitig_52.g17443 Utricularia gibba HOM05D005211 ORTHO05D006148 2.7e-09 66.2 158 35.4
unitig_0.g414 Utricularia gibba HOM05D005211 ORTHO05D006148 5.9e-09 65.1 151 34.4
A05p03550 Brassica napus HOM05D005211 ORTHO05D006148 7.7e-09 64.7 147 33.3
BraA05t19341Z Brassica rapa HOM05D005211 ORTHO05D006148 7.7e-09 64.7 147 33.3
Sopen09g012960 Solanum pennellii HOM05D005211 ORTHO05D006148 1.0e-08 64.3 113 38.9
Os04g0660100 Oryza sativa ssp. japonica HOM05D005211 ORTHO05D006148 1.3e-08 63.9 171 32.2
Atru.chr6.3543 Acer truncatum HOM05D005211 ORTHO05D006148 2.9e-08 62.8 153 35.9
BcaC02g12418 Brassica carinata HOM05D005211 ORTHO05D006148 2.9e-08 62.8 161 31.1
C04p04120 Brassica napus HOM05D005211 ORTHO05D006148 2.9e-08 62.8 147 32.7
BolC4t22051H Brassica oleracea HOM05D005211 ORTHO05D006148 2.9e-08 62.8 161 31.1
Peaxi162Scf00335g00067 Petunia axillaris HOM05D005211 ORTHO05D006148 1.1e-07 60.8 93 39.8
FAN15G2376 Fragaria x ananassa HOM05D005211 ORTHO05D006148 3.2e-07 59.3 102 42.2
Ah.11g050990 Amaranthus hybridus HOM05D005211 ORTHO05D006148 7.2e-07 58.2 138 34.1
Zm00001eb432720 Zea mays HOM05D005211 ORTHO05D006148 1.6e-06 57.0 176 32.4
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.7e-06 55.5 135 37.0
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 4.7e-06 55.5 153 32.7
C04p70060 Brassica napus HOM05D005211 ORTHO05D006148 8.0e-06 54.7 146 33.6
BolC4t28506H Brassica oleracea HOM05D005211 ORTHO05D006148 8.0e-06 54.7 146 33.6


User provided reference genes

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