Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 8.6e-31 136.3 69 100.0
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 3.5e-24 114.4 66 83.3
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 4.0e-20 100.9 69 68.1
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 1.5e-19 99.0 69 66.7
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 1.5e-19 99.0 69 66.7
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 2.9e-18 94.7 69 68.1
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 1.9e-17 92.0 69 63.8
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 4.2e-17 90.9 67 71.6
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 7.1e-17 90.1 70 65.7
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 2.7e-16 88.2 61 65.6
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 2.7e-16 88.2 69 62.3
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 2.7e-16 88.2 69 59.4
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 6.0e-16 87.0 71 62.0
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 7.8e-16 86.7 57 68.4
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 1.0e-15 86.3 72 59.7
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 1.3e-15 85.9 66 65.2
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 1.3e-15 85.9 69 62.3
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 1.7e-15 85.5 66 62.1
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 2.3e-15 85.1 69 62.3
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 2.3e-15 85.1 65 63.1
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 2.3e-15 85.1 69 63.8
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 2.3e-15 85.1 61 67.2
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 3.0e-15 84.7 69 60.9
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 3.0e-15 84.7 67 61.2
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 3.0e-15 84.7 67 61.2
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 3.0e-15 84.7 55 72.7
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 3.9e-15 84.3 69 59.4
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 3.9e-15 84.3 55 67.3
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 5.1e-15 84.0 70 58.6
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 6.6e-15 83.6 66 62.1
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 8.7e-15 83.2 66 60.6
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 8.7e-15 83.2 66 60.6
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 8.7e-15 83.2 66 60.6
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 8.7e-15 83.2 61 65.6
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 8.7e-15 83.2 73 56.2
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 1.1e-14 82.8 69 62.3
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 2.5e-14 81.6 69 60.9
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 9.6e-14 79.7 55 65.5
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 1.6e-13 79.0 56 67.9
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 2.1e-13 78.6 70 54.3
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 2.1e-13 78.6 55 63.6
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 2.1e-13 78.6 55 63.6
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 3.6e-13 77.8 67 56.7
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 3.6e-13 77.8 67 56.7
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 3.6e-13 77.8 69 58.0
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 4.8e-13 77.4 68 54.4
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 4.8e-13 77.4 68 54.4
Migut.G01293 Erythranthe guttata HOM05D007796 ORTHO05D009853 4.8e-13 77.4 68 54.4
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 4.8e-13 77.4 67 56.7
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 4.8e-13 77.4 67 56.7
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 4.8e-13 77.4 67 56.7
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 4.8e-13 77.4 56 66.1
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 8.1e-13 76.6 65 53.8
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 1.1e-12 76.3 55 61.8
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 1.8e-12 75.5 57 66.7
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 2.4e-12 75.1 67 50.7
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 2.4e-12 75.1 67 56.7
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 4.0e-12 74.3 66 57.6
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 5.3e-12 73.9 68 55.9
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 9.0e-12 73.2 61 57.4
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 9.0e-12 73.2 70 55.7
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 9.0e-12 73.2 63 52.4
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 9.0e-12 73.2 56 58.9
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 3.4e-11 71.2 58 65.5
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 4.5e-11 70.9 66 50.0
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 4.5e-11 70.9 63 49.2
Nitab4.5_0000242g0120 Nicotiana tabacum HOM05D007796 ORTHO05D009853 1.7e-10 68.9 68 50.0
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 4.9e-10 67.4 64 56.2
CiPaw.14G044700 Carya illinoinensis HOM05D007796 ORTHO05D009853 6.4e-10 67.0 68 52.9
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 1.1e-09 66.2 54 59.3
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 1.4e-09 65.9 61 45.9
Nitab4.5_0012444g0010 Nicotiana tabacum HOM05D007796 ORTHO05D009853 1.9e-09 65.5 54 51.9
Nitab4.5_0001521g0060 Nicotiana tabacum HOM05D007796 ORTHO05D009853 3.2e-09 64.7 54 51.9
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 4.2e-09 64.3 69 50.7
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 4.2e-09 64.3 68 47.1
ATR0743G114 Amborella trichopoda HOM05D007796 ORTHO05D009853 2.1e-08 62.0 56 53.6
HanXRQChr12g0382011 Helianthus annuus HOM05D007796 ORTHO05D009853 2.7e-08 61.6 53 49.1
GSVIVG01004106001 Vitis vinifera HOM05D007796 ORTHO05D009853 3.5e-08 61.2 68 47.1
AUR62023828 Chenopodium quinoa HOM05D007796 ORTHO05D009853 4.6e-08 60.8 57 54.4
AUR62002357 Chenopodium quinoa HOM05D007796 ORTHO05D009853 1.3e-07 59.3 57 54.4
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 1.3e-07 59.3 77 42.9
SHI10202 Sapria himalayana HOM05D007796 ORTHO05D009853 3.9e-07 57.8 39 64.1
Peaxi162Scf00075g01546 Petunia axillaris HOM05D007796 ORTHO05D009853 1.1e-06 56.2 67 43.3
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 3.3e-06 54.7 56 48.2
Glyma.16G028300 Glycine max HOM05D007796 ORTHO05D009853 9.6e-06 53.1 61 45.9


User provided reference genes

Program Settings