Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0578 Punica granatum HOM05D000001 ORTHO05D009286 2.9e-131 471.9 232 100.0
Eucgr.B01968 Eucalyptus grandis HOM05D000001 ORTHO05D009286 1.5e-82 310.1 254 65.7
Dinv40288 Davidia involucrata HOM05D000001 ORTHO05D009286 1.3e-78 297.0 238 65.5
Potri.013G021000 Populus trichocarpa HOM05D000001 ORTHO05D009286 1.7e-78 296.6 268 61.6
Actinidia23635 Actinidia chinensis HOM05D000001 ORTHO05D009286 4.9e-78 295.0 235 66.0
GSVIVG01000053001 Vitis vinifera HOM05D000001 ORTHO05D009286 1.1e-77 293.9 235 66.4
QL03p007002 Quercus lobata HOM05D000001 ORTHO05D009286 7.8e-76 287.7 231 62.8
CiPaw.07G017900 Carya illinoinensis HOM05D000001 ORTHO05D009286 1.3e-75 287.0 268 59.0
Duzib177G1137 Durio zibethinus HOM05D000001 ORTHO05D009582 1.3e-75 287.0 227 67.4
Thecc.05G303100 Theobroma cacao HOM05D000001 ORTHO05D009286 3.0e-75 285.8 265 60.4
Ciclev10002196m.g Citrus clementina HOM05D000001 ORTHO05D009286 5.0e-75 285.0 267 59.9
Manes.09G167201 Manihot esculenta HOM05D000001 ORTHO05D009286 1.5e-74 283.5 268 59.7
Prupe.6G325800 Prunus persica HOM05D000001 ORTHO05D009286 1.9e-74 283.1 217 68.2
TWI12G0446 Tripterygium wilfordii HOM05D000001 ORTHO05D009286 7.3e-74 281.2 263 60.8
RcHm_v2.0_Chr3g0454761 Rosa chinensis HOM05D000001 ORTHO05D009286 2.8e-73 279.3 213 69.0
Lj1g0025628 Lotus japonicus HOM05D000001 ORTHO05D009286 4.7e-73 278.5 224 64.3
Gorai.007G297100 Gossypium raimondii HOM05D000001 ORTHO05D009286 6.2e-73 278.1 223 65.9
Gohir.A11G265100 Gossypium hirsutum HOM05D000001 ORTHO05D009286 1.1e-72 277.3 223 65.9
AT3G05345 Arabidopsis thaliana HOM05D000001 ORTHO05D009286 1.8e-72 276.6 261 58.6
Gohir.D11G275300 Gossypium hirsutum HOM05D000001 ORTHO05D009286 1.8e-72 276.6 223 65.5
MELO3C004256.2 Cucumis melo HOM05D000001 ORTHO05D009286 2.3e-72 276.2 248 60.9
CsaV3_2G005310 Cucumis sativus L. HOM05D000001 ORTHO05D009286 4.0e-72 275.4 248 60.9
ClCG02G015790 Citrullus lanatus HOM05D000001 ORTHO05D009286 5.2e-72 275.0 248 60.9
BraSC132t45509Z Brassica rapa HOM05D000001 ORTHO05D009286 6.8e-72 274.6 224 63.4
Nitab4.5_0000137g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009286 8.9e-72 274.2 232 62.9
Nitab4.5_0003156g0050 Nicotiana tabacum HOM05D000001 ORTHO05D009286 1.2e-71 273.9 242 60.3
Ca_09356_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009286 1.5e-71 273.5 217 64.5
Sp3g04210 Schrenkiella parvula HOM05D000001 ORTHO05D009286 1.5e-71 273.5 261 58.6
Medtr7g113530 Medicago truncatula HOM05D000001 ORTHO05D009286 2.6e-71 272.7 219 65.3
TAR362G0463 Trochodendron aralioides HOM05D000001 ORTHO05D009286 2.6e-71 272.7 236 61.4
Carub.0003s0462 Capsella rubella HOM05D000001 ORTHO05D009286 3.4e-71 272.3 228 62.3
CSS0009057 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009286 4.4e-71 271.9 236 62.3
RhsimUnG0226000 Rhododendron simsii HOM05D000001 ORTHO05D009286 4.4e-71 271.9 254 57.5
arahy.Tifrunner.gnm1.ann1.N2G7N8 Arachis hypogaea HOM05D000001 ORTHO05D009286 1.7e-70 270.0 249 58.6
MD12G1219200 Malus domestica HOM05D000001 ORTHO05D009286 2.2e-70 269.6 211 68.7
FAN06G3148 Fragaria x ananassa HOM05D000001 ORTHO05D009286 3.7e-70 268.9 214 65.4
Peaxi162Scf00037g00631 Petunia axillaris HOM05D000001 ORTHO05D009286 3.7e-70 268.9 220 64.1
BNapus_Darmor_BZH_scaffold_114p00160 Brassica napus HOM05D000001 ORTHO05D009286 4.9e-70 268.5 224 63.4
Haze_04195 Corylus avellana HOM05D000001 ORTHO05D009582 4.9e-70 268.5 213 66.2
Lalb_Chr18g0045641 Lupinus albus HOM05D000001 ORTHO05D009286 4.9e-70 268.5 222 62.6
Cc02_g33430 Coffea canephora HOM05D000001 ORTHO05D009286 1.1e-69 267.3 250 59.6
Glyma.03G237900 Glycine max HOM05D000001 ORTHO05D009286 1.1e-69 267.3 221 62.9
Psat3g010960 Pisum sativum HOM05D000001 ORTHO05D009286 1.1e-69 267.3 218 63.3
CAN.G1034.26 Capsicum annuum HOM05D000001 ORTHO05D009286 1.4e-69 266.9 220 62.7
PGSC0003DMG400024697 Solanum tuberosum HOM05D000001 ORTHO05D009286 1.4e-69 266.9 233 60.5
FvH4_7g03590 Fragaria vesca HOM05D000001 ORTHO05D009286 4.1e-69 265.4 214 64.5
Sed0027835 Sechium edule HOM05D000001 ORTHO05D009286 4.1e-69 265.4 251 58.2
Atru.chr2.405 Acer truncatum HOM05D000001 ORTHO05D009286 9.2e-69 264.2 265 57.0
Solyc01g099260.3 Solanum lycopersicum HOM05D000001 ORTHO05D009286 9.2e-69 264.2 220 62.7
Hund07071 Selenicereus undatus HOM05D000001 ORTHO05D009286 2.1e-68 263.1 217 63.6
Sopen01g042810 Solanum pennellii HOM05D000001 ORTHO05D009286 2.1e-68 263.1 220 62.3
Nn1g02236 Nelumbo nucifera HOM05D000001 ORTHO05D009286 3.5e-68 262.3 238 58.8
CARHR079690 Cardamine hirsuta HOM05D000001 ORTHO05D009286 7.8e-68 261.2 217 62.2
EL10Ac6g14022 Beta vulgaris HOM05D000001 ORTHO05D009286 1.3e-67 260.4 241 59.3
arahy.Tifrunner.gnm1.ann1.LJ09F6 Arachis hypogaea HOM05D000001 ORTHO05D009286 3.9e-67 258.8 258 54.7
Sc06g0003290 Simmondsia chinensis HOM05D000001 ORTHO05D009286 6.6e-67 258.1 227 61.2
THA.LOC104821713 Tarenaya hassleriana HOM05D000001 ORTHO05D009286 8.6e-67 257.7 243 58.0
Phvul.006G091900 Phaseolus vulgaris HOM05D000001 ORTHO05D009286 3.3e-66 255.8 229 57.6
AUR62014152 Chenopodium quinoa HOM05D000001 ORTHO05D009286 4.3e-66 255.4 243 57.2
HanXRQChr03g0071681 Helianthus annuus HOM05D000001 ORTHO05D009286 5.6e-66 255.0 210 62.4
Sabra13G0023400 Salix brachista HOM05D000001 ORTHO05D009286 8.1e-65 251.1 243 58.8
VMungo0540G1561 Vigna mungo HOM05D000001 ORTHO05D009286 1.8e-64 250.0 220 57.7
CANSAT78G1766 Cannabis sativa HOM05D000001 ORTHO05D009286 2.4e-64 249.6 209 63.6
FAN03G0753 Fragaria x ananassa HOM05D000001 ORTHO05D009286 4.0e-64 248.8 268 52.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 5.2e-64 248.4 222 60.4
CANSAT78G0322 Cannabis sativa HOM05D000001 ORTHO05D009286 6.8e-64 248.1 209 63.2
DCAR_024833 Daucus carota HOM05D000001 ORTHO05D009286 1.2e-63 247.3 232 58.6
vmacro05020 Vaccinium macrocarpon HOM05D000001 ORTHO05D009286 5.8e-63 245.0 248 55.6
MSTRG.16965 Avicennia marina HOM05D000001 ORTHO05D009286 2.2e-62 243.0 210 60.5
Oeu017485.1 Olea europaea HOM05D000001 ORTHO05D009286 2.2e-62 243.0 196 62.8
ECA240G0839 Erigeron canadensis HOM05D000001 ORTHO05D009286 2.4e-61 239.6 210 58.1
Migut.B01034 Erythranthe guttata HOM05D000001 ORTHO05D009286 1.3e-59 233.8 194 62.9
SalBow8G4411 Salvia bowleyana HOM05D000001 ORTHO05D009286 1.5e-58 230.3 275 48.7
Aqoxy2G03342 Aquilegia oxysepala HOM05D000001 ORTHO05D009286 7.3e-58 228.0 225 54.2
unitig_747.g21349 Utricularia gibba HOM05D000001 ORTHO05D009286 4.7e-57 225.3 221 55.2
COL.COLO4_13469 Corchorus olitorius HOM05D000001 ORTHO05D009286 2.4e-56 223.0 212 59.0
PSO302G0274 Papaver somniferum HOM05D000001 ORTHO05D009286 1.2e-55 220.7 249 50.2
MBI17_g31750_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009286 3.4e-55 219.2 217 55.3
AL3G15790 Arabidopsis lyrata HOM05D000001 ORTHO05D009286 7.6e-55 218.0 176 63.1
Eucgr.B01873 Eucalyptus grandis HOM05D000001 ORTHO05D009286 8.4e-54 214.5 151 71.5
SGA_v2.0_scaffold172G38993 Striga asiatica HOM05D000001 ORTHO05D009286 1.4e-53 213.8 210 53.8
PSO170G4485 Papaver somniferum HOM05D000001 ORTHO05D009286 2.4e-53 213.0 249 49.8
CDE05G2030 Ceratophyllum demersum HOM05D000001 ORTHO05D009286 4.0e-48 195.7 222 47.7
Zm00001eb287490 Zea mays HOM05D000001 ORTHO05D009286 5.8e-47 191.8 238 48.7
Cfa006590 Carpinus fangiana HOM05D000001 ORTHO05D009582 1.3e-46 190.7 165 63.0
AUR62038496 Chenopodium quinoa HOM05D000001 ORTHO05D009286 2.4e-45 186.4 162 59.9
BcaC05g30155 Brassica carinata HOM05D000001 ORTHO05D009286 7.9e-44 181.4 149 62.4
HPP92_013683 Vanilla planifolia HOM05D000001 ORTHO05D009286 6.7e-43 178.3 203 48.8
ATR0030G028 Amborella trichopoda HOM05D000001 ORTHO05D009286 1.3e-41 174.1 179 54.2
Lsat_1_v5_gn_9_123500 Lactuca sativa HOM05D000001 ORTHO05D009286 2.1e-41 173.3 193 49.7
Mapoly0074s0078 Marchantia polymorpha HOM05D000001 ORTHO05D009286 6.9e-40 168.3 228 40.8
AagrBONN_evm.TU.Sc2ySwM_344.2674 Anthoceros agrestis HOM05D000001 ORTHO05D009286 4.2e-37 159.1 208 42.3
Pp3c27_1510 Physcomitrium patens HOM05D000001 ORTHO05D009286 1.0e-35 154.5 210 38.6
TPR.G33241 Trifolium pratense HOM05D000001 ORTHO05D009286 5.1e-35 152.1 106 69.8
Eucgr.B01971 Eucalyptus grandis HOM05D000001 ORTHO05D009286 2.5e-34 149.8 80 86.2
TPR.G18990 Trifolium pratense HOM05D000001 ORTHO05D009286 1.6e-33 147.1 85 80.0
SMO367G0812 Selaginella moellendorffii HOM05D000001 ORTHO05D009286 6.9e-32 141.7 212 40.1
A05p32000 Brassica napus HOM05D000001 ORTHO05D009286 5.8e-31 138.7 145 53.1
BraA05t22031Z Brassica rapa HOM05D000001 ORTHO05D009286 5.8e-31 138.7 145 53.1
Cpa.g.sc48.55 Carica papaya HOM05D000001 ORTHO05D009286 3.2e-29 132.9 128 60.2
CBR_g31147 Chara braunii HOM05D000001 ORTHO05D009286 1.3e-27 127.5 224 37.9
Lj9C80T2 Lonicera japonica HOM05D000001 ORTHO05D009286 1.7e-22 110.5 86 66.3
Aa31LG5G15650 Aethionema arabicum HOM05D000001 ORTHO05D009286 1.3e-17 94.4 93 58.1
MCO07G492 Micromonas commoda HOM05D000001 ORTHO05D009286 2.2e-17 93.6 264 28.4
Lj9A80T24 Lonicera japonica HOM05D000001 ORTHO05D009286 2.1e-12 77.0 41 85.4
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 7.7e-07 58.5 40 65.0
Cre01.g009900 Chlamydomonas reinhardtii HOM05D005546 ORTHO05D006458 2.2e-06 57.0 189 27.0
SGA_v2.0_scaffold481G52322 Striga asiatica HOM05D003651 ORTHO05D010159 2.2e-06 57.0 196 25.5
Os01g0606900 Oryza sativa ssp. japonica HOM05D000175 ORTHO05D001341 2.9e-06 56.6 94 33.0
QL02p075213 Quercus lobata HOM05D003651 ORTHO05D010159 2.9e-06 56.6 207 25.6
Cre17.g713051 Chlamydomonas reinhardtii HOM05D000367 ORTHO05D000470 6.5e-06 55.5 88 43.2
MSTRG.25132 Avicennia marina HOM05D003651 ORTHO05D009121 8.5e-06 55.1 181 25.4
Manes.02G088600 Manihot esculenta HOM05D005546 ORTHO05D006458 8.5e-06 55.1 206 25.7


User provided reference genes

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