Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0561 Punica granatum HOM05D007317 ORTHO05D009299 2.6e-178 628.6 327 100.0
TAR627G0483 Trochodendron aralioides HOM05D007317 ORTHO05D009299 4.7e-119 431.8 342 69.3
TAR627G0019 Trochodendron aralioides HOM05D007317 ORTHO05D009299 1.2e-117 427.2 343 69.4
QL08p013454 Quercus lobata HOM05D007317 ORTHO05D009299 1.7e-116 423.3 341 68.9
QL08p013772 Quercus lobata HOM05D007317 ORTHO05D009299 2.2e-116 422.9 341 68.6
CiPaw.11G183200 Carya illinoinensis HOM05D007317 ORTHO05D009299 6.4e-116 421.4 343 68.2
Haze_09595 Corylus avellana HOM05D007317 ORTHO05D009299 3.2e-115 419.1 351 65.8
Cfa020433 Carpinus fangiana HOM05D007317 ORTHO05D009299 7.0e-115 417.9 351 65.5
Eucgr.F00996 Eucalyptus grandis HOM05D007317 ORTHO05D009299 1.2e-114 417.2 342 64.3
Potri.011G132500 Populus trichocarpa HOM05D007317 ORTHO05D009299 6.6e-113 411.4 345 64.9
Atru.chr2.3195 Acer truncatum HOM05D007317 ORTHO05D009299 1.5e-112 410.2 344 65.4
RcHm_v2.0_Chr5g0037211 Rosa chinensis HOM05D007317 ORTHO05D009299 7.3e-112 407.9 342 63.5
Atru.chr2.3185 Acer truncatum HOM05D007317 ORTHO05D009299 1.6e-111 406.8 343 64.7
CSS0009056 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 2.8e-111 406.0 346 63.9
CSS0029394 Camellia sinensis var. sinensis HOM05D007317 ORTHO05D009299 2.8e-111 406.0 346 64.2
Actinidia09959 Actinidia chinensis HOM05D007317 ORTHO05D009299 6.2e-111 404.8 341 63.9
Manes.03G122200 Manihot esculenta HOM05D007317 ORTHO05D009299 3.1e-110 402.5 280 73.9
Sabra11G0119300 Salix brachista HOM05D007317 ORTHO05D009299 4.0e-110 402.1 345 63.8
FvH4_3g21740 Fragaria vesca HOM05D007317 ORTHO05D009299 2.2e-108 396.4 328 64.6
Ciclev10008788m.g Citrus clementina HOM05D007317 ORTHO05D009299 1.1e-107 394.0 345 62.0
TWI38G0523 Tripterygium wilfordii HOM05D007317 ORTHO05D009299 1.4e-107 393.7 350 62.0
Dinv22311 Davidia involucrata HOM05D007317 ORTHO05D009299 2.4e-107 392.9 327 66.4
Nn1g03706 Nelumbo nucifera HOM05D007317 ORTHO05D009299 2.4e-107 392.9 352 63.4
Prupe.4G201600 Prunus persica HOM05D007317 ORTHO05D009299 3.2e-107 392.5 341 62.2
ClCG10G005750 Citrullus lanatus HOM05D007317 ORTHO05D009299 4.1e-107 392.1 304 68.1
Lj1C863T3 Lonicera japonica HOM05D007317 ORTHO05D009299 1.6e-106 390.2 282 71.6
Thecc.07G054800 Theobroma cacao HOM05D007317 ORTHO05D009299 6.0e-106 388.3 328 64.6
Aqoxy4G02123 Aquilegia oxysepala HOM05D007317 ORTHO05D009299 1.0e-105 387.5 347 61.1
Nitab4.5_0000749g0020 Nicotiana tabacum HOM05D007317 ORTHO05D009299 1.3e-105 387.1 346 61.0
Phvul.005G091100 Phaseolus vulgaris HOM05D007317 ORTHO05D009299 1.7e-105 386.7 340 62.1
VMungo1080G0023 Vigna mungo HOM05D007317 ORTHO05D009299 3.9e-105 385.6 310 65.5
Ca_01757_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 8.6e-105 384.4 347 58.8
Ca_01763_v3 Cicer arietinum L. HOM05D007317 ORTHO05D009299 8.6e-105 384.4 347 58.8
Duzib213G1071 Durio zibethinus HOM05D007317 ORTHO05D009299 8.6e-105 384.4 332 64.5
Hma1.2p1_2644F.1_g325960 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 1.1e-104 384.0 278 70.9
Lj3g0025188 Lotus japonicus HOM05D007317 ORTHO05D009299 1.5e-104 383.6 281 70.1
CANSAT11G2557 Cannabis sativa HOM05D007317 ORTHO05D009299 1.9e-104 383.3 349 60.2
Gorai.002G082000 Gossypium raimondii HOM05D007317 ORTHO05D009299 4.3e-104 382.1 336 62.8
CsaV3_3G005440 Cucumis sativus L. HOM05D007317 ORTHO05D009299 5.6e-104 381.7 302 67.9
Gohir.D01G060600 Gossypium hirsutum HOM05D007317 ORTHO05D009299 7.3e-104 381.3 336 62.8
Medtr2g082660 Medicago truncatula HOM05D007317 ORTHO05D009299 9.5e-104 380.9 281 69.4
Sc03g0009140 Simmondsia chinensis HOM05D007317 ORTHO05D009299 9.5e-104 380.9 333 60.7
MELO3C025426.2 Cucumis melo HOM05D007317 ORTHO05D009299 1.2e-103 380.6 291 69.1
Gohir.A01G074100 Gossypium hirsutum HOM05D007317 ORTHO05D009299 1.2e-103 380.6 335 61.8
Glyma.12G214800 Glycine max HOM05D007317 ORTHO05D009299 6.2e-103 378.3 277 69.0
Lsat_1_v5_gn_0_6961 Lactuca sativa HOM05D007317 ORTHO05D001968 6.2e-103 378.3 273 74.0
Lalb_Chr22g0357071 Lupinus albus HOM05D007317 ORTHO05D009299 8.1e-103 377.9 279 67.7
Nitab4.5_0000092g0060 Nicotiana tabacum HOM05D007317 ORTHO05D009299 8.1e-103 377.9 342 60.2
Glyma.13G286800 Glycine max HOM05D007317 ORTHO05D009299 5.2e-102 375.2 277 68.6
SalBow7G0069 Salvia bowleyana HOM05D007317 ORTHO05D009299 8.9e-102 374.4 316 63.9
Peaxi162Scf01097g00014 Petunia axillaris HOM05D007317 ORTHO05D009299 5.8e-101 371.7 341 59.8
AUR62029234 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.2e-100 369.8 345 58.8
TPR.G36790 Trifolium pratense HOM05D007317 ORTHO05D009299 3.7e-100 369.0 280 68.2
MD11G1227700 Malus domestica HOM05D007317 ORTHO05D009299 6.4e-100 368.2 333 61.9
Migut.H01861 Erythranthe guttata HOM05D007317 ORTHO05D009299 7.1e-99 364.8 344 58.1
EL10Ac4g07985 Beta vulgaris HOM05D007317 ORTHO05D009299 1.6e-98 363.6 348 56.9
AUR62015637 Chenopodium quinoa HOM05D007317 ORTHO05D009299 2.1e-98 363.2 345 57.7
Sopen12g001230 Solanum pennellii HOM05D007317 ORTHO05D009299 1.0e-97 360.9 338 58.9
Solyc12g005240.1 Solanum lycopersicum HOM05D007317 ORTHO05D009299 6.6e-97 358.2 338 58.6
GSVIVG01014590001 Vitis vinifera HOM05D007317 ORTHO05D009299 6.6e-97 358.2 345 59.1
MBI02_g29710_MAGBIO Magnolia biondii HOM05D007317 ORTHO05D009299 3.3e-96 355.9 343 57.1
PGSC0003DMG400021808 Solanum tuberosum HOM05D007317 ORTHO05D009299 3.3e-96 355.9 344 58.4
HanXRQChr03g0077301 Helianthus annuus HOM05D007317 ORTHO05D009299 9.6e-96 354.4 335 60.3
Psat5g249840 Pisum sativum HOM05D007317 ORTHO05D009299 1.2e-95 354.0 283 66.1
Ah.06g183090 Amaranthus hybridus HOM05D007317 ORTHO05D009299 8.1e-95 351.3 282 64.2
CAN.G262.21 Capsicum annuum HOM05D007317 ORTHO05D009299 5.2e-94 348.6 343 56.6
PSO541G0431 Papaver somniferum HOM05D007317 ORTHO05D009299 6.8e-94 348.2 355 54.6
Aa31LG8G7460 Aethionema arabicum HOM05D007317 ORTHO05D009299 1.9e-91 340.1 339 58.1
AL3G34590 Arabidopsis lyrata HOM05D007317 ORTHO05D009299 1.6e-90 337.0 342 57.3
AT3G20680 Arabidopsis thaliana HOM05D007317 ORTHO05D009299 4.6e-90 335.5 344 57.8
COL.COLO4_09559 Corchorus olitorius HOM05D007317 ORTHO05D009299 6.0e-90 335.1 339 56.9
A01p34120 Brassica napus HOM05D007317 ORTHO05D009299 1.7e-89 333.6 342 57.6
BraA01t03516Z Brassica rapa HOM05D007317 ORTHO05D009299 1.7e-89 333.6 342 57.3
Sed0024877 Sechium edule HOM05D007317 ORTHO05D009299 3.0e-89 332.8 280 64.6
Hma1.2p1_2644F.1_g325950 Hydrangea macrophylla HOM05D007317 ORTHO05D009299 5.1e-89 332.0 305 59.7
Sp3g18720 Schrenkiella parvula HOM05D007317 ORTHO05D009299 5.1e-89 332.0 341 56.6
PSO675G5311 Papaver somniferum HOM05D007317 ORTHO05D009299 6.6e-89 331.6 277 59.9
Thhalv10021080m.g Eutrema salsugineum HOM05D007317 ORTHO05D009299 1.9e-88 330.1 341 56.6
unitig_578.g16764 Utricularia gibba HOM05D007317 ORTHO05D009299 7.3e-88 328.2 281 59.4
BcaB04g20638 Brassica carinata HOM05D007317 ORTHO05D009299 2.8e-87 326.2 342 56.1
THA.LOC104825404 Tarenaya hassleriana HOM05D007317 ORTHO05D009299 6.2e-87 325.1 348 55.5
CARHR096490 Cardamine hirsuta HOM05D007317 ORTHO05D009299 8.1e-87 324.7 340 57.4
BcaC09g49009 Brassica carinata HOM05D007317 ORTHO05D009299 2.4e-86 323.2 343 56.6
C01p43540 Brassica napus HOM05D007317 ORTHO05D009299 9.0e-86 321.2 345 55.4
BolC1t04315H Brassica oleracea HOM05D007317 ORTHO05D009299 9.0e-86 321.2 345 55.4
Carub.0003s2066 Capsella rubella HOM05D007317 ORTHO05D009299 3.0e-81 306.2 343 55.1
ATR0733G181 Amborella trichopoda HOM05D007317 ORTHO05D009299 7.6e-77 291.6 285 52.3
SGA_v2.0_scaffold320G48570 Striga asiatica HOM05D007317 ORTHO05D009299 6.7e-73 278.5 299 53.8
Cc05_g13190 Coffea canephora HOM05D007317 ORTHO05D009299 8.4e-68 261.5 206 65.5
Zm00001eb291900 Zea mays HOM05D007317 ORTHO05D009299 1.0e-65 254.6 346 44.8
Os05g0500400 Oryza sativa ssp. japonica HOM05D007317 ORTHO05D009299 6.2e-63 245.4 293 47.4
Lalb_Chr14g0366071 Lupinus albus HOM05D007317 ORTHO05D009299 7.4e-56 221.9 186 59.1
FAN21G2436 Fragaria x ananassa HOM05D007317 ORTHO05D009299 1.5e-53 214.2 133 77.4
Cpa.g.sc97.77 Carica papaya HOM05D007317 ORTHO05D009299 7.9e-50 201.8 212 56.1
SEGI_21971 Sequoiadendron giganteum HOM05D007317 ORTHO05D009299 1.5e-48 197.6 270 41.1
PGSC0003DMG400016049 Solanum tuberosum HOM05D007317 ORTHO05D009299 1.0e-44 184.9 121 72.7
BolC3t18840H Brassica oleracea HOM05D007317 ORTHO05D009299 1.0e-33 148.3 279 41.6
BcaC01g02387 Brassica carinata HOM05D007317 ORTHO05D009299 5.7e-32 142.5 220 46.4
Pp3c9_12310 Physcomitrium patens HOM05D007317 ORTHO05D009299 2.0e-29 134.0 264 34.1
Mapoly0015s0049 Marchantia polymorpha HOM05D007317 ORTHO05D009299 5.9e-29 132.5 309 32.7
BcaC09g49010 Brassica carinata HOM05D007317 ORTHO05D009299 4.7e-26 122.9 134 51.5
Dinv32111 Davidia involucrata HOM05D007317 ORTHO05D009299 3.4e-24 116.7 115 55.7
MD03G1212500 Malus domestica HOM05D007317 ORTHO05D009299 3.5e-21 106.7 126 50.8
MCO11G003 Micromonas commoda HOM05D007317 ORTHO05D009299 5.5e-19 99.4 281 29.2
CBR_g22430 Chara braunii HOM05D006038 ORTHO05D007547 7.2e-19 99.0 265 28.3
BcaB02g11442 Brassica carinata HOM05D007317 ORTHO05D009299 2.9e-12 77.0 84 47.6
Cre08.g369000 Chlamydomonas reinhardtii HOM05D007317 ORTHO05D009299 5.7e-08 62.8 308 24.7


User provided reference genes

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