Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 0.0e+00 1360.5 651 100.0
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1111.3 650 78.8
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1107.8 646 79.4
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1105.1 648 78.2
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1105.1 646 79.4
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1104.0 650 78.3
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1103.6 648 78.2
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1100.9 640 79.2
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 0.0e+00 1096.6 656 78.5
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1096.3 651 78.8
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1094.7 650 77.8
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1094.7 652 77.8
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1092.8 650 77.2
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1087.4 641 78.8
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1086.6 652 77.3
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1085.1 650 77.1
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1083.9 651 77.1
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1083.2 693 74.3
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1082.4 650 76.9
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1082.0 648 76.9
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1081.2 636 78.5
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1080.9 652 76.2
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1079.7 643 77.6
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1079.7 650 76.6
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1079.7 648 76.9
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1079.3 647 76.7
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1077.4 652 77.0
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1075.5 634 80.0
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 4.5e-312 1074.3 655 76.8
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 4.5e-312 1074.3 650 76.8
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 4.5e-312 1073.5 650 74.9
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 8.9e-312 1073.2 650 76.9
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 5.3e-311 1070.5 650 76.6
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 3.4e-310 1067.8 647 75.6
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 4.4e-310 1067.4 652 75.8
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 7.5e-310 1066.6 652 75.3
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 2.9e-309 1064.7 646 75.7
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 2.9e-309 1064.7 656 75.8
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 3.7e-309 1064.3 652 73.8
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 3.7e-309 1064.3 650 74.0
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 4.9e-309 1063.9 650 75.4
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 1.1e-308 1062.8 650 77.2
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 5.9e-307 1057.0 652 74.4
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 7.8e-307 1056.6 653 74.4
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 4.3e-305 1050.8 721 69.6
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 4.3e-305 1050.8 641 75.5
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 9.5e-305 1049.7 682 72.3
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 1.6e-304 1048.9 638 74.8
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 2.8e-304 1048.1 637 76.3
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 6.2e-304 1047.0 646 73.8
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 2.3e-303 1045.0 646 74.0
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 3.1e-303 1044.6 653 73.8
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 3.1e-303 1044.6 638 76.6
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 8.9e-303 1043.1 650 74.9
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.2e-302 1042.7 650 74.8
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 5.8e-302 1040.4 663 73.6
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 9.8e-302 1039.6 652 74.1
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 1.7e-301 1038.9 668 71.6
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 2.9e-301 1038.1 642 74.6
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 1.9e-300 1035.4 641 74.7
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 1.2e-299 1032.7 670 72.1
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 6.0e-299 1030.4 648 73.1
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 1.0e-298 1029.6 647 73.6
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 1.3e-298 1029.2 653 73.8
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.7e-298 1028.9 649 73.5
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 1.5e-297 1025.8 647 73.4
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 7.3e-297 1023.5 647 73.1
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 6.2e-296 1020.4 652 71.9
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 8.1e-296 1020.0 649 72.9
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.1e-295 1018.1 650 71.8
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 2.0e-294 1015.4 647 73.1
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 2.0e-294 1015.4 647 73.1
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 2.0e-294 1015.4 647 73.1
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 3.4e-294 1014.6 650 71.7
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 1.3e-293 1012.7 804 62.3
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 2.2e-293 1011.9 594 77.9
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 8.3e-293 1010.0 609 76.7
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 1.4e-292 1009.2 640 72.2
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 2.4e-292 1008.4 649 72.1
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 2.4e-292 1008.4 637 73.0
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 9.2e-292 1006.5 598 78.9
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 1.6e-291 1005.7 611 75.3
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 4.7e-288 994.2 649 70.4
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 1.2e-286 989.6 789 61.6
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 5.4e-284 980.7 658 69.8
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 6.8e-279 963.8 575 77.6
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 8.7e-274 946.8 652 68.3
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 2.6e-270 935.3 652 68.7
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 4.5e-270 934.5 594 71.9
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 4.9e-269 931.0 642 71.0
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 8.1e-264 913.7 558 74.2
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 2.1e-251 872.5 557 73.1
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 1.3e-250 869.8 638 62.4
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 1.5e-249 866.3 574 69.0
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 3.8e-245 851.7 640 62.2
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 1.2e-235 820.1 641 59.6
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 5.9e-198 694.9 511 66.1
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 4.1e-191 672.2 363 80.7
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 1.7e-165 587.0 370 75.9
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 6.0e-158 562.0 557 51.9
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 7.8e-158 561.6 379 71.2
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.2e-152 543.5 372 68.5
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 4.0e-146 522.7 535 50.5
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 2.0e-121 440.7 241 79.7
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 2.9e-88 330.5 746 33.0
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 3.0e-77 293.9 152 82.2
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 2.7e-65 254.2 243 57.6
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 3.1e-53 214.2 200 55.5
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 1.2e-28 132.5 90 68.9
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 3.4e-28 131.0 71 81.7
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 5.1e-24 117.1 94 64.9
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.5e-23 115.5 70 71.4
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.9e-23 115.2 71 69.0
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.4e-21 109.0 70 67.1
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 6.9e-21 106.7 77 59.7
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 1.7e-19 102.1 69 66.7
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 4.2e-18 97.4 95 55.8
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 4.2e-18 97.4 64 75.0
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 4.2e-18 97.4 64 75.0
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 4.2e-18 97.4 64 75.0
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 3.9e-16 90.9 82 52.4
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.7e-11 75.5 52 61.5
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 2.5e-10 71.6 99 44.4
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 3.6e-09 67.8 69 46.4
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 3.9e-08 64.3 64 46.9


User provided reference genes

Program Settings