Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0375 Punica granatum HOM05D004590 ORTHO05D006056 1.2e-155 553.1 277 100.0
Eucgr.H01008 Eucalyptus grandis HOM05D004590 ORTHO05D006056 1.1e-71 274.2 276 52.9
Eucgr.L03092 Eucalyptus grandis HOM05D004590 ORTHO05D006056 2.4e-71 273.1 276 52.9
QL12p019662 Quercus lobata HOM05D004590 ORTHO05D006056 2.6e-70 269.6 264 53.0
Prupe.8G266000 Prunus persica HOM05D004590 ORTHO05D006056 2.2e-69 266.5 266 55.6
Dinv10105 Davidia involucrata HOM05D004590 ORTHO05D006056 2.9e-69 266.2 264 53.8
Atru.chr5.984 Acer truncatum HOM05D004590 ORTHO05D006056 8.4e-69 264.6 278 50.4
Manes.01G228400 Manihot esculenta HOM05D004590 ORTHO05D006056 3.5e-67 259.2 268 51.1
Potri.002G195400 Populus trichocarpa HOM05D004590 ORTHO05D006056 1.8e-66 256.9 269 52.0
CiPaw.07G118200 Carya illinoinensis HOM05D004590 ORTHO05D006056 2.3e-66 256.5 269 52.0
Cpa.g.sc18.55 Carica papaya HOM05D004590 ORTHO05D006056 6.7e-66 255.0 270 51.9
Ciclev10021487m.g Citrus clementina HOM05D004590 ORTHO05D006056 1.9e-65 253.4 276 49.3
TWI75G0806 Tripterygium wilfordii HOM05D004590 ORTHO05D006056 2.5e-65 253.1 281 50.2
Haze_05055 Corylus avellana HOM05D004590 ORTHO05D006056 7.4e-65 251.5 272 50.4
Sabra14G0088900 Salix brachista HOM05D004590 ORTHO05D006056 7.4e-65 251.5 266 50.8
Duzib133G0018 Durio zibethinus HOM05D004590 ORTHO05D006056 4.8e-64 248.8 270 50.7
Actinidia25853 Actinidia chinensis HOM05D004590 ORTHO05D006056 8.2e-64 248.1 255 53.3
Potri.014G119900 Populus trichocarpa HOM05D004590 ORTHO05D006056 1.1e-63 247.7 261 50.6
FAN04G1151 Fragaria x ananassa HOM05D004590 ORTHO05D001814 2.4e-63 246.5 282 50.4
Cfa005786 Carpinus fangiana HOM05D004590 ORTHO05D006056 6.9e-63 245.0 274 49.6
Manes.05G004200 Manihot esculenta HOM05D004590 ORTHO05D006056 6.9e-63 245.0 245 53.5
Thecc.01G314300 Theobroma cacao HOM05D004590 ORTHO05D006056 6.9e-63 245.0 270 51.1
FAN08G1928 Fragaria x ananassa HOM05D004590 ORTHO05D006056 1.2e-62 244.2 283 49.5
FAN18G0138 Fragaria x ananassa HOM05D004590 ORTHO05D006056 1.2e-62 244.2 282 50.0
COL.COLO4_23224 Corchorus olitorius HOM05D004590 ORTHO05D006056 1.5e-62 243.8 258 50.4
FAN18G0760 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.5e-62 243.8 282 50.0
vmacro02401 Vaccinium macrocarpon HOM05D004590 ORTHO05D006056 2.2e-61 240.0 260 50.0
Gorai.004G050300 Gossypium raimondii HOM05D004590 ORTHO05D006056 5.0e-61 238.8 278 47.5
Glyma.02G011900 Glycine max HOM05D004590 ORTHO05D006056 8.5e-61 238.0 269 50.6
PSO761G0256 Papaver somniferum HOM05D004590 ORTHO05D006056 8.5e-61 238.0 254 51.6
Glyma.10G012400 Glycine max HOM05D004590 ORTHO05D006056 1.1e-60 237.7 261 52.1
Gohir.D08G050700 Gossypium hirsutum HOM05D004590 ORTHO05D006056 1.1e-60 237.7 278 46.8
MD03G1293400 Malus domestica HOM05D004590 ORTHO05D006056 2.5e-60 236.5 278 48.2
VMungo0720G1332 Vigna mungo HOM05D004590 ORTHO05D006056 2.5e-60 236.5 255 52.5
Phvul.007G213800 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 4.2e-60 235.7 257 51.0
Sabra02G0161400 Salix brachista HOM05D004590 ORTHO05D006056 4.2e-60 235.7 269 49.4
PSO210G2446 Papaver somniferum HOM05D004590 ORTHO05D006056 5.5e-60 235.3 254 51.2
Peaxi162Scf00691g00043 Petunia axillaris HOM05D004590 ORTHO05D006056 5.5e-60 235.3 248 48.8
Gohir.A08G040600 Gossypium hirsutum HOM05D004590 ORTHO05D006056 9.3e-60 234.6 278 47.1
Aqoxy5G02551 Aquilegia oxysepala HOM05D004590 ORTHO05D006056 2.1e-59 233.4 258 49.2
SalBow2G1668 Salvia bowleyana HOM05D004590 ORTHO05D001814 6.7e-58 228.4 252 48.4
Gorai.007G122400 Gossypium raimondii HOM05D004590 ORTHO05D006056 8.7e-58 228.0 249 50.6
Actinidia17904 Actinidia chinensis HOM05D004590 ORTHO05D006056 1.9e-57 226.9 276 47.5
Gohir.D11G113800 Gossypium hirsutum HOM05D004590 ORTHO05D006056 1.9e-57 226.9 250 51.2
DCAR_002892 Daucus carota HOM05D004590 ORTHO05D006056 3.3e-57 226.1 270 47.8
CiPaw.07G118100 Carya illinoinensis HOM05D004590 ORTHO05D006056 9.7e-57 224.6 282 45.4
Lsat_1_v5_gn_9_2700 Lactuca sativa HOM05D004590 ORTHO05D006056 2.8e-56 223.0 250 49.2
CiPaw.08G089200 Carya illinoinensis HOM05D004590 ORTHO05D006056 4.8e-56 222.2 255 50.2
Ca_10279_v3 Cicer arietinum L. HOM05D004590 ORTHO05D006056 4.8e-56 222.2 261 48.3
Nitab4.5_0007407g0080 Nicotiana tabacum HOM05D004590 ORTHO05D001814 4.8e-56 222.2 276 45.7
Peaxi162Scf00058g02629 Petunia axillaris HOM05D004590 ORTHO05D006056 6.3e-56 221.9 250 48.0
Dinv10107 Davidia involucrata HOM05D004590 ORTHO05D006056 1.8e-55 220.3 272 46.3
Lj5g0007000 Lotus japonicus HOM05D004590 ORTHO05D006056 1.8e-55 220.3 268 47.4
PGR044G0990 Punica granatum HOM05D004590 ORTHO05D006056 3.1e-55 219.5 277 47.3
Solyc01g079370.4 Solanum lycopersicum HOM05D004590 ORTHO05D001814 2.0e-54 216.9 274 42.7
ECA247G0553 Erigeron canadensis HOM05D001902 ORTHO05D006056 2.6e-54 216.5 249 48.2
Lalb_Chr02g0146851 Lupinus albus HOM05D004590 ORTHO05D006056 2.6e-54 216.5 260 48.8
CANSAT25G1025 Cannabis sativa HOM05D004590 ORTHO05D006056 5.9e-54 215.3 261 48.3
Glyma.19G216900 Glycine max HOM05D004590 ORTHO05D006056 2.2e-53 213.4 269 46.1
HanXRQChr10g0285241 Helianthus annuus HOM05D004590 ORTHO05D006056 2.9e-53 213.0 254 46.5
Medtr1g086950 Medicago truncatula HOM05D004590 ORTHO05D006056 5.0e-53 212.2 267 46.1
Glyma.03G220000 Glycine max HOM05D004590 ORTHO05D006056 4.2e-52 209.1 259 46.7
Lj1C16T8 Lonicera japonica HOM05D004590 ORTHO05D006056 4.2e-52 209.1 252 47.2
Nitab4.5_0000363g0250 Nicotiana tabacum HOM05D004590 ORTHO05D001814 4.2e-52 209.1 260 46.2
DCAR_018295 Daucus carota HOM05D004590 ORTHO05D006056 7.2e-52 208.4 259 44.4
FAN13G0862 Fragaria x ananassa HOM05D004590 ORTHO05D001814 1.6e-51 207.2 282 45.4
Nn4g25589 Nelumbo nucifera HOM05D004590 ORTHO05D006056 2.1e-51 206.8 252 48.8
Psat6g161400 Pisum sativum HOM05D004590 ORTHO05D006056 7.9e-51 204.9 257 47.5
TPR.G38694 Trifolium pratense HOM05D004590 ORTHO05D006056 7.9e-51 204.9 272 46.3
Migut.N00771 Erythranthe guttata HOM05D004590 ORTHO05D006056 1.0e-50 204.5 287 44.6
Medtr7g109590 Medicago truncatula HOM05D004590 ORTHO05D006056 1.4e-50 204.1 266 47.7
Sopen06g004240 Solanum pennellii HOM05D004590 ORTHO05D001814 1.8e-50 203.8 249 45.4
DCAR_012338 Daucus carota HOM05D004590 ORTHO05D006056 3.0e-50 203.0 251 42.6
Lj1g0007921 Lotus japonicus HOM05D004590 ORTHO05D006056 3.9e-50 202.6 257 47.1
Solyc06g009610.1 Solanum lycopersicum HOM05D004590 ORTHO05D001814 3.9e-50 202.6 249 45.0
TPR.G4132 Trifolium pratense HOM05D004590 ORTHO05D006056 2.0e-49 200.3 293 44.0
PGSC0003DMG400007284 Solanum tuberosum HOM05D004590 ORTHO05D006056 2.6e-49 199.9 251 45.0
VMungo1383G1848 Vigna mungo HOM05D004590 ORTHO05D006056 3.3e-49 199.5 255 44.7
RcHm_v2.0_Chr7g0241061 Rosa chinensis HOM05D004590 ORTHO05D006056 9.7e-49 198.0 234 48.7
THA.LOC104802151 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.2e-48 196.8 281 44.1
Oeu008476.1 Olea europaea HOM05D004590 ORTHO05D006056 2.8e-48 196.4 202 47.5
Rhsim13G0004900 Rhododendron simsii HOM05D001902 ORTHO05D001973 8.2e-48 194.9 265 43.4
Phvul.001G213500 Phaseolus vulgaris HOM05D004590 ORTHO05D006056 1.4e-47 194.1 258 44.6
Oeu043737.1 Olea europaea HOM05D004590 ORTHO05D006056 2.4e-47 193.4 230 44.8
PSO223G0035 Papaver somniferum HOM05D004590 ORTHO05D006056 3.1e-47 193.0 238 47.5
A05p00540 Brassica napus HOM05D004590 ORTHO05D006056 6.9e-47 191.8 275 44.7
AL4G46920 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 9.1e-47 191.4 272 44.1
Sp4g29300 Schrenkiella parvula HOM05D004590 ORTHO05D006056 2.6e-46 189.9 272 43.4
BraA05t19052Z Brassica rapa HOM05D004590 ORTHO05D006056 3.4e-46 189.5 275 44.4
Nitab4.5_0007087g0030 Nicotiana tabacum HOM05D004590 ORTHO05D001814 5.9e-46 188.7 255 42.4
Psat3g019440 Pisum sativum HOM05D004590 ORTHO05D006056 5.9e-46 188.7 257 45.5
BcaB02g08783 Brassica carinata HOM05D004590 ORTHO05D006056 1.0e-45 188.0 274 44.5
Sopen01g031150 Solanum pennellii HOM05D004590 ORTHO05D006056 1.0e-45 188.0 227 42.7
Dinv33123 Davidia involucrata HOM05D004590 ORTHO05D006056 1.3e-45 187.6 215 47.0
Gohir.A11G109250 Gossypium hirsutum HOM05D004590 ORTHO05D006056 1.7e-45 187.2 221 47.5
CARHR142760 Cardamine hirsuta HOM05D004590 ORTHO05D006056 2.2e-45 186.8 275 44.4
AT2G47360 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 3.8e-45 186.0 273 43.2
BcaC02g12568 Brassica carinata HOM05D004590 ORTHO05D006056 3.8e-45 186.0 275 44.4
A03p25930 Brassica napus HOM05D004590 ORTHO05D006056 3.8e-45 186.0 262 44.3
BolC4t21692H Brassica oleracea HOM05D004590 ORTHO05D006056 3.8e-45 186.0 275 44.4
Thhalv10001759m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 1.4e-44 184.1 273 41.8
BolC3t15444H Brassica oleracea HOM05D004590 ORTHO05D006056 1.9e-44 183.7 272 41.5
C04p00580 Brassica napus HOM05D004590 ORTHO05D006056 3.2e-44 183.0 275 44.0
BraA03t11810Z Brassica rapa HOM05D004590 ORTHO05D006056 3.2e-44 183.0 272 43.4
BcaB01g03170 Brassica carinata HOM05D004590 ORTHO05D006056 5.5e-44 182.2 260 44.6
arahy.Tifrunner.gnm1.ann1.3K3C0B Arachis hypogaea HOM05D004590 ORTHO05D006056 7.2e-44 181.8 273 40.3
BcaB06g29451 Brassica carinata HOM05D004590 ORTHO05D006056 7.2e-44 181.8 271 43.2
Thhalv10009368m.g Eutrema salsugineum HOM05D004590 ORTHO05D006056 3.6e-43 179.5 266 36.8
BolC4t28754H Brassica oleracea HOM05D004590 ORTHO05D006056 6.1e-43 178.7 282 41.5
MBI19_g07230_MAGBIO Magnolia biondii HOM05D004590 ORTHO05D006056 6.1e-43 178.7 263 42.6
BcaC02g06968 Brassica carinata HOM05D004590 ORTHO05D006056 7.9e-43 178.3 279 41.2
C04p72730 Brassica napus HOM05D004590 ORTHO05D006056 7.9e-43 178.3 279 41.2
Sed0021092 Sechium edule HOM05D004590 ORTHO05D006056 7.9e-43 178.3 241 42.7
MELO3C017913.2 Cucumis melo HOM05D001902 ORTHO05D001973 1.0e-42 177.9 233 44.2
A10p01300 Brassica napus HOM05D004590 ORTHO05D006056 6.7e-42 175.3 267 37.1
CARHR001880 Cardamine hirsuta HOM05D004590 ORTHO05D006056 8.8e-42 174.9 255 39.2
AL1G11900 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.0e-41 173.7 266 37.6
THA.LOC104815920 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.0e-41 173.7 256 35.9
AT1G02570 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 3.3e-41 172.9 255 38.8
BraA10t42408Z Brassica rapa HOM05D004590 ORTHO05D006056 9.7e-41 171.4 267 36.7
Carub.0001s0163 Capsella rubella HOM05D004590 ORTHO05D006056 1.7e-40 170.6 253 37.5
Sp1g01590 Schrenkiella parvula HOM05D004590 ORTHO05D006056 1.7e-40 170.6 264 36.4
Cc01_g21490 Coffea canephora HOM05D004590 ORTHO05D006056 3.7e-40 169.5 293 39.6
C05p01300 Brassica napus HOM05D004590 ORTHO05D006056 4.8e-40 169.1 268 36.9
ClCG10G011450 Citrullus lanatus HOM05D004590 ORTHO05D006056 1.1e-39 167.9 236 40.7
BolC5t28912H Brassica oleracea HOM05D004590 ORTHO05D006056 1.4e-39 167.5 268 36.2
Sed0006535 Sechium edule HOM05D004590 ORTHO05D006056 2.4e-39 166.8 245 40.4
Eucgr.K03548 Eucalyptus grandis HOM05D004590 ORTHO05D006056 7.0e-39 165.2 249 41.4
ClCG09G005050 Citrullus lanatus HOM05D004590 ORTHO05D001814 1.2e-38 164.5 258 39.1
CsaV3_7G030000 Cucumis sativus L. HOM05D004590 ORTHO05D006056 1.6e-38 164.1 245 42.0
MELO3C015920.2 Cucumis melo HOM05D004590 ORTHO05D006056 4.5e-38 162.5 245 41.2
BcaB03g15770 Brassica carinata HOM05D004590 ORTHO05D006056 4.2e-36 156.0 266 34.6
CANSAT25G2756 Cannabis sativa HOM05D004590 ORTHO05D006056 7.2e-36 155.2 270 37.8
Aa31LG1G9960 Aethionema arabicum HOM05D004590 ORTHO05D006056 1.2e-35 154.5 253 36.4
Migut.N00928 Erythranthe guttata HOM05D004590 ORTHO05D006056 2.7e-35 153.3 261 39.8
C03p30930 Brassica napus HOM05D004590 ORTHO05D006056 3.6e-35 152.9 275 38.5
MD03G1293600 Malus domestica HOM05D004590 ORTHO05D006056 1.2e-33 147.9 119 53.8
AL251U10010 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 2.0e-33 147.1 261 39.1
AT1G02575 Arabidopsis thaliana HOM05D004590 ORTHO05D006056 8.2e-32 141.7 252 34.5
PSO210G1746 Papaver somniferum HOM05D004590 ORTHO05D006056 8.2e-32 141.7 147 43.5
SalBow3G0071 Salvia bowleyana HOM05D004590 ORTHO05D006056 4.1e-31 139.4 239 39.7
SalBow3G0439 Salvia bowleyana HOM05D004590 ORTHO05D006056 4.1e-31 139.4 239 39.7
RcHm_v2.0_Chr7g0241031 Rosa chinensis HOM05D004590 ORTHO05D006056 2.0e-30 137.1 102 57.8
Aa31LG10G16310 Aethionema arabicum HOM05D004590 ORTHO05D006056 2.2e-29 133.7 256 37.1
HPP92_001238 Vanilla planifolia HOM05D004590 ORTHO05D006056 2.7e-27 126.7 256 35.2
Nitab4.5_0003540g0150 Nicotiana tabacum HOM05D004590 ORTHO05D006056 1.7e-24 117.5 96 53.1
EL10As5g23540 Beta vulgaris HOM05D004590 ORTHO05D006056 2.2e-24 117.1 116 46.6
Actinidia20991 Actinidia chinensis HOM05D000063 ORTHO05D001814 2.8e-24 116.7 114 50.9
AL5G45160 Arabidopsis lyrata HOM05D004590 ORTHO05D006056 3.7e-24 116.3 216 38.4
BcaC02g09006 Brassica carinata HOM05D004590 ORTHO05D006056 7.7e-22 108.6 128 46.1
BolC4t25517H Brassica oleracea HOM05D004590 ORTHO05D006056 7.7e-22 108.6 128 46.1
Carub.0004s3008 Capsella rubella HOM05D004590 ORTHO05D006056 2.9e-21 106.7 136 44.1
Lalb_Chr21g0309621 Lupinus albus HOM05D004590 ORTHO05D006056 6.5e-21 105.5 167 43.7
FAN18G1107 Fragaria x ananassa HOM05D004590 ORTHO05D006056 7.5e-17 92.0 62 64.5
C04p39520 Brassica napus HOM05D004590 ORTHO05D006056 9.8e-17 91.7 112 46.4
SGA_v2.0_scaffold198G41121 Striga asiatica HOM05D004590 ORTHO05D006056 1.3e-16 91.3 162 35.8
THA.LOC104801571 Tarenaya hassleriana HOM05D004590 ORTHO05D006056 2.2e-16 90.5 178 32.0
BcaC01g05033 Brassica carinata HOM05D004590 ORTHO05D006056 1.5e-12 77.8 146 39.0
SalBow3G0261 Salvia bowleyana HOM05D004590 ORTHO05D006056 2.5e-12 77.0 243 30.5
Hma1.2p1_0408F.1_g146640 Hydrangea macrophylla HOM05D004590 ORTHO05D006056 2.0e-09 67.4 70 42.9


User provided reference genes

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