Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0347 Punica granatum HOM05D000051 ORTHO05D000015 2.3e-232 808.5 411 100.0
CSS0037667 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.1e-27 126.7 390 30.0
Dinv17489 Davidia involucrata HOM05D000051 ORTHO05D000015 1.6e-23 114.8 404 27.0
Dinv17490 Davidia involucrata HOM05D000051 ORTHO05D000015 9.7e-21 105.5 404 26.7
Actinidia06264 Actinidia chinensis HOM05D000051 ORTHO05D000015 8.2e-20 102.4 390 27.7
Dinv20164 Davidia involucrata HOM05D000051 ORTHO05D000015 2.0e-18 97.8 391 25.1
Dinv17485 Davidia involucrata HOM05D000051 ORTHO05D000015 5.9e-18 96.3 391 24.8
Rhsim13G0198300 Rhododendron simsii HOM05D000051 ORTHO05D000015 1.0e-17 95.5 427 25.1
Lj1A868T32 Lonicera japonica HOM05D000051 ORTHO05D000015 1.3e-17 95.1 381 27.3
vmacro14310 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.7e-17 94.7 381 26.2
Lj2A948G37 Lonicera japonica HOM05D000051 ORTHO05D000015 1.9e-16 91.3 399 27.1
CARHR200710 Cardamine hirsuta HOM05D000051 ORTHO05D000015 5.5e-16 89.7 394 25.1
vmacro11751 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.2e-15 88.6 424 26.2
vmacro11750 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 2.1e-15 87.8 395 27.1
Rhsim07G0063700 Rhododendron simsii HOM05D000051 ORTHO05D000015 4.7e-15 86.7 392 25.8
Sc13g0005680 Simmondsia chinensis HOM05D000051 ORTHO05D000015 8.0e-15 85.9 336 27.4
Hma1.2p1_1609F.1_g293460 Hydrangea macrophylla HOM05D000051 ORTHO05D000015 2.3e-14 84.3 398 25.4
RcHm_v2.0_Chr5g0059961 Rosa chinensis HOM05D000051 ORTHO05D000015 2.3e-14 84.3 385 26.8
CSS0042330 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 3.0e-14 84.0 397 23.7
CSS0000789 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.0e-14 83.6 383 26.9
CSS0015207 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.1e-13 82.0 312 26.3
CSS0023472 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.1e-13 82.0 312 26.3
vmacro17042 Vaccinium macrocarpon HOM05D000051 ORTHO05D000015 1.1e-13 82.0 393 25.2
Actinidia15955 Actinidia chinensis HOM05D000051 ORTHO05D000015 2.0e-13 81.3 401 25.9
FAN14G1913 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.6e-13 80.9 383 26.4
CARHR190910 Cardamine hirsuta HOM05D000051 ORTHO05D000015 3.3e-13 80.5 430 23.7
Prupe.4G160900 Prunus persica HOM05D000051 ORTHO05D000015 4.4e-13 80.1 391 23.8
CSS0011408 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 5.7e-13 79.7 351 24.2
Ciclev10011664m.g Citrus clementina HOM05D000051 ORTHO05D000015 5.7e-13 79.7 410 23.4
RcHm_v2.0_Chr5g0059951 Rosa chinensis HOM05D000051 ORTHO05D000015 9.7e-13 79.0 380 26.3
Duzib268G1144 Durio zibethinus HOM05D000051 ORTHO05D000015 1.7e-12 78.2 397 24.2
Thecc.04G151900 Theobroma cacao HOM05D000051 ORTHO05D000015 2.2e-12 77.8 397 23.4
COL.COLO4_09619 Corchorus olitorius HOM05D000051 ORTHO05D000015 3.7e-12 77.0 411 23.4
CSS0033794 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.8e-12 76.6 400 25.0
Carub.0006s2039 Capsella rubella HOM05D000051 ORTHO05D000015 4.8e-12 76.6 390 25.6
CSS0002318 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 6.3e-12 76.3 395 25.3
Ciclev10003148m.g Citrus clementina HOM05D000051 ORTHO05D000015 6.3e-12 76.3 401 21.9
Actinidia05113 Actinidia chinensis HOM05D000051 ORTHO05D000015 8.2e-12 75.9 372 25.5
Thhalv10009690m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 8.2e-12 75.9 407 21.9
FvH4_2g40800 Fragaria vesca HOM05D000051 ORTHO05D000015 8.2e-12 75.9 394 23.9
AL6G33690 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 1.4e-11 75.1 393 23.9
Cc05_g13410 Coffea canephora HOM05D000051 ORTHO05D000015 1.4e-11 75.1 328 27.1
PSO173G0112 Papaver somniferum HOM05D000051 ORTHO05D000015 1.8e-11 74.7 406 24.4
RcHm_v2.0_Chr5g0028391 Rosa chinensis HOM05D000051 ORTHO05D000015 1.8e-11 74.7 387 25.3
BolC7t45973H Brassica oleracea HOM05D000051 ORTHO05D000015 3.1e-11 73.9 380 25.0
HanXRQChr01g0026671 Helianthus annuus HOM05D000051 ORTHO05D000015 3.1e-11 73.9 364 24.5
RcHm_v2.0_Chr5g0033891 Rosa chinensis HOM05D000051 ORTHO05D000015 3.1e-11 73.9 402 24.9
BraA09t40034Z Brassica rapa HOM05D000051 ORTHO05D000015 4.1e-11 73.6 392 21.2
Cc01_g12550 Coffea canephora HOM05D000051 ORTHO05D000015 7.0e-11 72.8 338 28.7
AT5G22670 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 1.2e-10 72.0 399 24.8
CSS0033868 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 1.2e-10 72.0 392 24.7
Cc01_g01420 Coffea canephora HOM05D000051 ORTHO05D000015 1.2e-10 72.0 414 26.3
Dinv21722 Davidia involucrata HOM05D000051 ORTHO05D000015 1.2e-10 72.0 387 23.3
Ciclev10020065m.g Citrus clementina HOM05D000051 ORTHO05D000015 1.6e-10 71.6 401 21.7
Lj1g0002178 Lotus japonicus HOM05D000051 ORTHO05D000015 1.6e-10 71.6 385 21.6
Cc01_g01510 Coffea canephora HOM05D000051 ORTHO05D000015 2.0e-10 71.2 362 25.7
FAN03G0619 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.0e-10 71.2 396 24.5
FAN28G2792 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.0e-10 71.2 414 24.4
AL8G32200 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 3.5e-10 70.5 385 24.2
PGSC0003DMG401001040 Solanum tuberosum HOM05D000051 ORTHO05D000015 3.5e-10 70.5 372 23.1
CSS0019187 Camellia sinensis var. sinensis HOM05D000051 ORTHO05D000015 4.5e-10 70.1 396 24.7
Carub.0007s1460 Capsella rubella HOM05D000051 ORTHO05D000015 4.5e-10 70.1 343 23.3
CAN.G337.100 Capsicum annuum HOM05D000051 ORTHO05D000015 4.5e-10 70.1 367 23.2
PSO832G0349 Papaver somniferum HOM05D000051 ORTHO05D000015 4.5e-10 70.1 408 24.3
Gohir.D11G296768 Gossypium hirsutum HOM05D000051 ORTHO05D000015 5.9e-10 69.7 377 21.0
Prupe.4G160800 Prunus persica HOM05D000051 ORTHO05D000015 5.9e-10 69.7 370 24.3
GSVIVG01038076001 Vitis vinifera HOM05D000051 ORTHO05D000015 5.9e-10 69.7 382 25.9
FvH4_6g10000 Fragaria vesca HOM05D000051 ORTHO05D000015 1.0e-09 68.9 365 24.9
COL.COLO4_35721 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.3e-09 68.6 353 27.2
BraA03t10393Z Brassica rapa HOM05D000051 ORTHO05D000015 1.7e-09 68.2 400 25.8
AUR62033353 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.7e-09 68.2 394 22.1
Gohir.A11G283200 Gossypium hirsutum HOM05D000051 ORTHO05D000015 1.7e-09 68.2 377 20.7
Prupe.4G158900 Prunus persica HOM05D000051 ORTHO05D000015 1.7e-09 68.2 402 23.6
Gorai.007G321500 Gossypium raimondii HOM05D000051 ORTHO05D000015 2.2e-09 67.8 377 21.0
AT5G53635 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 2.9e-09 67.4 399 24.1
Phvul.008G129800 Phaseolus vulgaris HOM05D000051 ORTHO05D000015 2.9e-09 67.4 417 24.9
Potri.011G121400 Populus trichocarpa HOM05D000051 ORTHO05D000015 2.9e-09 67.4 385 23.9
Prupe.4G183700 Prunus persica HOM05D000051 ORTHO05D000015 2.9e-09 67.4 435 23.9
Ciclev10003768m.g Citrus clementina HOM05D000051 ORTHO05D000015 3.8e-09 67.0 199 25.1
HanXRQChr17g0564801 Helianthus annuus HOM05D000051 ORTHO05D000015 3.8e-09 67.0 380 23.9
MD03G1276400 Malus domestica HOM05D000051 ORTHO05D000015 3.8e-09 67.0 412 24.3
Prupe.4G161300 Prunus persica HOM05D000051 ORTHO05D000015 3.8e-09 67.0 409 23.7
Cc01_g01390 Coffea canephora HOM05D000051 ORTHO05D000015 5.0e-09 66.6 391 26.1
COL.COLO4_12386 Corchorus olitorius HOM05D000051 ORTHO05D011342 8.5e-09 65.9 402 22.1
Gorai.005G010500 Gossypium raimondii HOM05D000051 ORTHO05D000015 8.5e-09 65.9 375 24.3
AUR62033355 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.1e-08 65.5 390 21.3
AUR62033357 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.1e-08 65.5 390 21.3
FvH4_7g28000 Fragaria vesca HOM05D000051 ORTHO05D000015 1.1e-08 65.5 396 24.5
FAN18G4561 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.1e-08 65.5 197 27.4
Cc08_g00360 Coffea canephora HOM05D000051 ORTHO05D000015 1.5e-08 65.1 394 22.8
FvH4_5g02221 Fragaria vesca HOM05D000051 ORTHO05D000015 1.5e-08 65.1 405 21.0
FAN11G0701 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.5e-08 65.1 393 24.2
Gorai.013G162900 Gossypium raimondii HOM05D000051 ORTHO05D000015 1.5e-08 65.1 390 23.8
AT4G00160 Arabidopsis thaliana HOM05D000051 ORTHO05D000015 1.9e-08 64.7 404 20.8
Migut.M00828 Erythranthe guttata HOM05D000051 ORTHO05D000015 1.9e-08 64.7 380 23.7
FAN06G4717 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.9e-08 64.7 365 24.7
FAN06G4287 Fragaria x ananassa HOM05D000051 ORTHO05D000015 2.5e-08 64.3 371 26.1
FvH4_5g35600 Fragaria vesca HOM05D000051 ORTHO05D000015 3.2e-08 63.9 201 28.4
FAN09G4418 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.2e-08 63.9 187 25.7
FAN11G0155 Fragaria x ananassa HOM05D000051 ORTHO05D000015 3.2e-08 63.9 408 22.1
EL10Ac8g18742 Beta vulgaris HOM05D000051 ORTHO05D000015 5.5e-08 63.2 400 21.8
Thhalv10015300m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 5.5e-08 63.2 397 24.2
Cc01_g01350 Coffea canephora HOM05D000051 ORTHO05D000015 7.2e-08 62.8 367 23.4
RcHm_v2.0_Chr5g0040081 Rosa chinensis HOM05D000051 ORTHO05D000015 7.2e-08 62.8 352 23.0
A09p33700 Brassica napus HOM05D000051 ORTHO05D000015 9.4e-08 62.4 405 22.0
BraA09t38919Z Brassica rapa HOM05D000051 ORTHO05D000015 9.4e-08 62.4 404 23.0
Cc01_g01520 Coffea canephora HOM05D000051 ORTHO05D000015 9.4e-08 62.4 360 24.7
FAN10G3157 Fragaria x ananassa HOM05D000051 ORTHO05D000015 9.4e-08 62.4 371 25.3
AL6G33710 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 1.2e-07 62.0 408 22.5
Cc10_g09940 Coffea canephora HOM05D000051 ORTHO05D000015 1.2e-07 62.0 391 23.8
Dinv04084 Davidia involucrata HOM05D000051 ORTHO05D000015 1.2e-07 62.0 192 26.6
HanXRQChr13g0407771 Helianthus annuus HOM05D000051 ORTHO05D000015 1.2e-07 62.0 337 24.3
AL8G32080 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 1.6e-07 61.6 394 23.6
AUR62020682 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.6e-07 61.6 385 22.6
Gohir.A13G140301 Gossypium hirsutum HOM05D000051 ORTHO05D000015 1.6e-07 61.6 390 23.3
HanXRQChr01g0026711 Helianthus annuus HOM05D000051 ORTHO05D000015 1.6e-07 61.6 340 24.4
Sc13g0005620 Simmondsia chinensis HOM05D000051 ORTHO05D000015 1.6e-07 61.6 366 24.3
A10p11070 Brassica napus HOM05D000051 ORTHO05D000015 2.1e-07 61.2 384 21.1
BolC3t13716H Brassica oleracea HOM05D000051 ORTHO05D000015 2.1e-07 61.2 383 25.1
Ciclev10013392m.g Citrus clementina HOM05D000051 ORTHO05D000015 2.1e-07 61.2 124 33.9
Cc01_g01970 Coffea canephora HOM05D000051 ORTHO05D000015 2.1e-07 61.2 393 24.7
PSO339G2172 Papaver somniferum HOM05D000051 ORTHO05D000015 2.1e-07 61.2 374 22.7
FvH4_3g20090 Fragaria vesca HOM05D000051 ORTHO05D000015 2.7e-07 60.8 403 23.8
COL.COLO4_04142 Corchorus olitorius HOM05D000051 ORTHO05D000015 3.6e-07 60.5 413 24.5
DCAR_017364 Daucus carota HOM05D000051 ORTHO05D000015 3.6e-07 60.5 244 25.0
Gohir.D02G008800 Gossypium hirsutum HOM05D000051 ORTHO05D000015 3.6e-07 60.5 378 23.8
QL08p020617 Quercus lobata HOM05D000051 ORTHO05D000015 3.6e-07 60.5 388 23.5
Carub.0007s1904 Capsella rubella HOM05D000689 ORTHO05D000015 4.7e-07 60.1 125 35.2
CARHR162500 Cardamine hirsuta HOM05D000051 ORTHO05D000015 4.7e-07 60.1 383 19.6
Thhalv10002518m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 4.7e-07 60.1 403 21.3
FAN19G2798 Fragaria x ananassa HOM05D000051 ORTHO05D010714 4.7e-07 60.1 401 24.2
Aa31LG1G12950 Aethionema arabicum HOM05D000051 ORTHO05D000015 6.1e-07 59.7 399 22.8
Duzib213G0041 Durio zibethinus HOM05D000051 ORTHO05D000015 6.1e-07 59.7 375 22.9
Duzib213G0200 Durio zibethinus HOM05D000051 ORTHO05D000015 6.1e-07 59.7 419 23.2
Thhalv10000884m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 6.1e-07 59.7 405 22.7
Lj1A869T76 Lonicera japonica HOM05D000051 ORTHO05D000015 6.1e-07 59.7 378 22.8
BolC9t57236H Brassica oleracea HOM05D000051 ORTHO05D000015 8.0e-07 59.3 401 22.7
Thhalv10000888m.g Eutrema salsugineum HOM05D000051 ORTHO05D000015 8.0e-07 59.3 393 22.9
HanXRQChr17g0564481 Helianthus annuus HOM05D000051 ORTHO05D000015 8.0e-07 59.3 393 25.2
MD11G1266000 Malus domestica HOM05D000051 ORTHO05D000015 8.0e-07 59.3 368 23.9
Manes.04G135400 Manihot esculenta HOM05D001477 ORTHO05D001182 8.0e-07 59.3 92 40.2
Oeu007604.1 Olea europaea HOM05D000051 ORTHO05D000015 8.0e-07 59.3 391 23.0
AL8G28380 Arabidopsis lyrata HOM05D000051 ORTHO05D000015 1.0e-06 58.9 406 23.9
C05p15230 Brassica napus HOM05D000051 ORTHO05D000015 1.0e-06 58.9 394 22.1
CARHR072280 Cardamine hirsuta HOM05D000051 ORTHO05D000015 1.0e-06 58.9 403 23.6
Carub.0005s2152 Capsella rubella HOM05D000051 ORTHO05D000015 1.4e-06 58.5 389 21.6
AUR62016332 Chenopodium quinoa HOM05D000051 ORTHO05D000015 1.4e-06 58.5 421 24.2
PSO173G0175 Papaver somniferum HOM05D000051 ORTHO05D000015 1.4e-06 58.5 382 22.0
BraA01t04598Z Brassica rapa HOM05D000689 ORTHO05D000015 1.8e-06 58.2 435 26.2
Carub.0008s1259 Capsella rubella HOM05D000051 ORTHO05D000015 1.8e-06 58.2 353 20.4
Cc01_g01400 Coffea canephora HOM05D000051 ORTHO05D000015 1.8e-06 58.2 367 26.2
COL.COLO4_09415 Corchorus olitorius HOM05D000051 ORTHO05D000015 1.8e-06 58.2 366 22.7
FAN28G0970 Fragaria x ananassa HOM05D000051 ORTHO05D000015 1.8e-06 58.2 285 24.9
Medtr3g087260 Medicago truncatula HOM05D000051 ORTHO05D000015 3.0e-06 57.4 368 22.0
Thecc.07G080700 Theobroma cacao HOM05D000051 ORTHO05D000015 3.0e-06 57.4 380 23.2
Dinv21724 Davidia involucrata HOM05D000051 ORTHO05D000015 4.0e-06 57.0 101 35.6
Migut.M00820 Erythranthe guttata HOM05D000051 ORTHO05D000015 4.0e-06 57.0 378 23.5
Migut.M00835 Erythranthe guttata HOM05D000051 ORTHO05D000015 4.0e-06 57.0 383 24.0
Carub.0008s1384 Capsella rubella HOM05D000051 ORTHO05D000015 5.2e-06 56.6 363 24.5
AUR62020513 Chenopodium quinoa HOM05D000689 ORTHO05D000015 5.2e-06 56.6 420 25.0
Dinv42542 Davidia involucrata HOM05D000051 ORTHO05D000015 5.2e-06 56.6 108 39.8
FvH4_3g17080 Fragaria vesca HOM05D000051 ORTHO05D000015 5.2e-06 56.6 132 29.5
FAN11G1423 Fragaria x ananassa HOM05D000051 ORTHO05D008292 5.2e-06 56.6 216 27.3
Nitab4.5_0011608g0030 Nicotiana tabacum HOM05D000051 ORTHO05D000015 5.2e-06 56.6 111 35.1
QL05p025606 Quercus lobata HOM05D000051 ORTHO05D000015 5.2e-06 56.6 388 21.6
Sc07g0006530 Simmondsia chinensis HOM05D000051 ORTHO05D000015 5.2e-06 56.6 104 34.6
SGA_v2.0_scaffold25G10773 Striga asiatica HOM05D000051 ORTHO05D000015 5.2e-06 56.6 412 24.3
Ciclev10018280m.g Citrus clementina HOM05D000051 ORTHO05D000015 6.8e-06 56.2 105 33.3
MD08G1193400 Malus domestica HOM05D000051 ORTHO05D000015 6.8e-06 56.2 101 30.7
C08p30750 Brassica napus HOM05D000051 ORTHO05D000015 8.8e-06 55.8 391 23.0
BolC3t14004H Brassica oleracea HOM05D000051 ORTHO05D000015 8.8e-06 55.8 387 24.0
Dinv17487 Davidia involucrata HOM05D000051 ORTHO05D000015 8.8e-06 55.8 106 30.2
Nitab4.5_0000397g0270 Nicotiana tabacum HOM05D000051 ORTHO05D000015 8.8e-06 55.8 111 35.1


User provided reference genes

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