Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 0.0e+00 1700.3 927 100.0
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 1.1e-157 561.6 1021 44.0
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 6.1e-156 555.8 1021 43.5
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 5.6e-149 532.7 1036 40.9
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 5.9e-143 512.7 1020 40.4
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 1.9e-141 507.7 1001 41.5
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.2e-139 499.6 966 41.9
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.2e-138 498.4 966 42.0
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 5.8e-138 496.1 966 41.8
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.9e-137 493.8 1030 40.2
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 3.7e-137 493.4 966 41.6
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.4e-136 490.7 1039 39.8
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 2.4e-136 490.7 1027 40.1
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.0e-135 487.6 1039 39.7
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 2.7e-135 487.3 1027 39.9
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 1.0e-134 485.3 1011 40.0
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.7e-134 484.6 1053 38.6
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 7.3e-133 479.2 1033 39.2
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 2.1e-132 477.6 1055 39.0
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.8e-131 474.6 1025 39.2
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 2.2e-129 467.6 959 41.3
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 8.6e-126 455.7 1027 38.5
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 5.6e-125 453.0 1012 38.7
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 5.6e-125 453.0 993 38.4
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 7.3e-125 452.6 998 38.8
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.1e-124 451.1 1002 38.3
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 4.7e-124 449.9 1030 39.1
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 6.2e-124 449.5 1027 38.8
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 3.1e-123 447.2 988 38.7
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 5.2e-123 446.4 934 39.8
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 4.4e-122 443.4 857 41.7
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 4.9e-121 439.9 790 43.3
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 6.4e-121 439.5 980 38.6
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 1.4e-120 438.3 917 40.0
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 1.9e-120 438.0 1059 36.7
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 7.1e-120 436.0 982 39.7
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 1.2e-119 435.3 1006 37.0
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 4.6e-119 433.3 801 42.8
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 2.3e-118 431.0 970 36.6
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 8.6e-118 429.1 999 36.9
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 1.5e-117 428.3 1006 38.0
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 9.6e-117 425.6 1004 38.8
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 3.6e-116 423.7 1026 39.1
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 9.0e-115 419.1 1088 36.9
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 1.5e-114 418.3 1002 39.0
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 2.6e-114 417.5 1008 37.1
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 1.2e-111 408.7 994 37.4
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 3.9e-110 403.7 1024 37.5
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 3.9e-110 403.7 986 37.7
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 5.1e-110 403.3 1014 36.2
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 1.1e-109 402.1 897 39.0
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 1.3e-108 398.7 795 40.4
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 6.2e-108 396.4 1021 38.0
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 1.8e-107 394.8 1040 37.1
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 4.0e-107 393.7 1004 37.8
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 6.9e-107 392.9 980 37.7
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 7.6e-106 389.4 1006 37.0
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 4.9e-105 386.7 959 35.6
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 4.9e-105 386.7 959 36.7
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 1.4e-104 385.2 1037 37.9
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 1.9e-104 384.8 1024 35.3
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 3.5e-103 380.6 1026 35.4
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 3.9e-102 377.1 872 40.9
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.5e-101 374.4 997 34.8
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 7.4e-101 372.9 1016 35.7
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 9.6e-101 372.5 818 39.7
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.7e-100 370.5 1038 36.9
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 3.1e-99 367.5 999 35.1
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.3e-97 362.1 1034 36.5
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 1.3e-97 362.1 1005 34.2
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 2.2e-97 361.3 1000 35.2
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 6.4e-97 359.8 761 39.3
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 8.4e-97 359.4 996 34.8
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 1.1e-96 359.0 1006 34.8
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 5.5e-96 356.7 872 36.2
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 7.1e-96 356.3 999 34.7
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 9.3e-96 355.9 1002 35.4
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 3.5e-95 354.0 881 37.2
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.0e-94 352.4 920 35.2
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 3.3e-93 347.4 923 35.1
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 1.4e-91 342.0 856 36.3
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 2.4e-91 341.3 994 33.6
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 9.0e-91 339.3 1077 34.9
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 2.0e-90 338.2 1039 33.7
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 3.4e-90 337.4 1057 32.9
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 3.2e-88 330.9 1037 32.4
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 3.3e-85 320.9 1063 34.5
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 1.6e-84 318.5 964 32.5
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 6.3e-84 316.6 1074 32.2
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 6.9e-83 313.2 948 33.4
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.5e-82 312.0 1002 34.5
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.2e-79 302.4 1021 32.4
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 1.6e-79 302.0 912 33.7
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 2.3e-78 298.1 959 31.7
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 6.7e-78 296.6 965 33.9
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 1.3e-76 292.4 1088 32.4
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 1.1e-75 289.3 1002 33.4
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.4e-75 288.9 1012 31.5
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.8e-75 288.5 745 36.4
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 3.1e-75 287.7 811 33.2
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 2.0e-74 285.0 821 34.0
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 4.5e-74 283.9 1141 33.0
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 1.7e-73 282.0 1019 31.8
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.5e-69 268.9 799 32.4
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 3.3e-69 267.7 963 33.1
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 9.1e-67 259.6 965 32.0
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 2.0e-66 258.5 650 40.6
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 7.7e-58 229.9 939 32.8
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 5.0e-57 227.3 933 33.0
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 1.4e-51 209.1 154 72.7
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 7.0e-43 180.3 227 52.9
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 5.2e-38 164.1 158 58.9
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 2.7e-34 151.8 400 36.0
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.3e-33 149.4 460 30.9
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 4.3e-32 144.4 452 30.5
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 4.0e-30 137.9 246 40.2
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 3.4e-29 134.8 1104 24.9
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 2.0e-26 125.6 158 49.4
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 2.8e-23 115.2 161 46.0
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 4.4e-21 107.8 102 62.7
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 5.4e-19 100.9 97 59.8
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 6.0e-18 97.4 73 64.4
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 5.0e-17 94.4 1040 22.7
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 2.5e-16 92.0 142 45.8
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 1.2e-15 89.7 136 49.3
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 2.3e-14 85.5 434 32.9
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 2.0e-13 82.4 279 28.3
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 9.9e-13 80.1 187 32.1
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 4.1e-11 74.7 287 34.1
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 2.7e-10 72.0 61 67.2
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 1.7e-09 69.3 61 65.6
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 6.2e-07 60.8 47 55.3


User provided reference genes

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