Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0297 Punica granatum HOM05D005792 ORTHO05D007171 4.0e-229 797.7 402 100.0
Eucgr.F01710 Eucalyptus grandis HOM05D005792 ORTHO05D007171 3.6e-137 492.3 308 76.0
Prupe.1G357300 Prunus persica HOM05D005792 ORTHO05D007171 4.4e-135 485.3 307 74.9
Manes.18G007700 Manihot esculenta HOM05D005792 ORTHO05D007171 1.7e-134 483.4 309 74.4
Duzib093G0813 Durio zibethinus HOM05D005792 ORTHO05D007171 2.9e-134 482.6 309 74.1
Thecc.08G054700 Theobroma cacao HOM05D005792 ORTHO05D007171 8.3e-134 481.1 309 74.4
CiPaw.08G070500 Carya illinoinensis HOM05D005792 ORTHO05D007171 2.4e-133 479.6 309 72.5
CiPaw.08G070700 Carya illinoinensis HOM05D005792 ORTHO05D007171 3.2e-133 479.2 309 72.8
CANSAT51G0003 Cannabis sativa HOM05D005792 ORTHO05D007171 7.0e-133 478.0 308 73.1
Potri.005G247600 Populus trichocarpa HOM05D005792 ORTHO05D007171 2.0e-132 476.5 310 72.9
Ca_15448_v3 Cicer arietinum L. HOM05D005792 ORTHO05D007171 4.6e-132 475.3 309 72.5
Atru.chr13.181 Acer truncatum HOM05D005792 ORTHO05D007171 3.0e-131 472.6 310 71.9
Psat5g010960 Pisum sativum HOM05D005792 ORTHO05D007171 3.9e-131 472.2 309 72.5
Gorai.009G268300 Gossypium raimondii HOM05D005792 ORTHO05D007171 1.9e-130 469.9 309 71.8
TWI36G1625 Tripterygium wilfordii HOM05D005792 ORTHO05D007171 1.9e-130 469.9 309 72.5
Dinv39569 Davidia involucrata HOM05D005792 ORTHO05D007171 3.3e-130 469.2 309 71.2
Ciclev10001939m.g Citrus clementina HOM05D005792 ORTHO05D007171 4.3e-130 468.8 310 72.3
Gohir.D05G256800 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.6e-129 465.7 309 71.2
MD08G1005200 Malus domestica HOM05D005792 ORTHO05D007171 6.2e-129 464.9 306 72.2
GSVIVG01008709001 Vitis vinifera HOM05D005792 ORTHO05D007171 6.2e-129 464.9 309 72.2
Lalb_Chr23g0265871 Lupinus albus HOM05D005792 ORTHO05D007171 8.1e-129 464.5 309 70.6
Medtr3g115040 Medicago truncatula HOM05D005792 ORTHO05D007171 8.1e-129 464.5 309 71.5
Lj1g0011663 Lotus japonicus HOM05D005792 ORTHO05D007171 1.1e-128 464.2 309 71.8
QL02p013536 Quercus lobata HOM05D005792 ORTHO05D007171 1.1e-128 464.2 315 70.8
FvH4_2g37800 Fragaria vesca HOM05D005792 ORTHO05D007171 3.1e-128 462.6 302 74.8
RcHm_v2.0_Chr6g0303911 Rosa chinensis HOM05D005792 ORTHO05D007171 6.8e-128 461.5 306 73.9
Sed0026749 Sechium edule HOM05D005792 ORTHO05D007171 8.9e-128 461.1 308 70.8
Atru.chr1.2256 Acer truncatum HOM05D005792 ORTHO05D007171 1.2e-127 460.7 311 69.8
Nitab4.5_0000498g0200 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.2e-127 460.7 306 71.6
Glyma.06G019900 Glycine max HOM05D005792 ORTHO05D007171 1.5e-127 460.3 309 71.2
Manes.05G141100 Manihot esculenta HOM05D005792 ORTHO05D007171 5.8e-127 458.4 307 71.0
THA.LOC104813765 Tarenaya hassleriana HOM05D005792 ORTHO05D007171 5.8e-127 458.4 305 70.2
CsaV3_2G024540 Cucumis sativus L. HOM05D005792 ORTHO05D007171 1.3e-126 457.2 308 70.8
VMungo1309G0997 Vigna mungo HOM05D005792 ORTHO05D007171 1.3e-126 457.2 309 69.9
Hma1.2p1_1260F.1_g270990 Hydrangea macrophylla HOM05D005792 ORTHO05D007171 2.9e-126 456.1 309 71.5
EL10Ac1g02028 Beta vulgaris HOM05D005792 ORTHO05D007171 4.9e-126 455.3 307 69.7
MELO3C011330.2 Cucumis melo HOM05D005792 ORTHO05D007171 1.2e-124 450.7 319 69.0
AL2G36210 Arabidopsis lyrata HOM05D005792 ORTHO05D007171 2.1e-124 449.9 305 68.9
Migut.C00916 Erythranthe guttata HOM05D005792 ORTHO05D007171 2.7e-124 449.5 309 68.6
AT1G76150 Arabidopsis thaliana HOM05D005792 ORTHO05D007171 3.5e-124 449.1 305 68.9
BcaC08g47286 Brassica carinata HOM05D005792 ORTHO05D007171 7.8e-124 448.0 305 69.2
CAN.G401.3 Capsicum annuum HOM05D005792 ORTHO05D007171 7.8e-124 448.0 306 69.6
Nitab4.5_0002353g0010 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.0e-123 447.6 303 69.6
Sed0027939 Sechium edule HOM05D005792 ORTHO05D007171 1.0e-123 447.6 308 68.8
Sc26g0004560 Simmondsia chinensis HOM05D005792 ORTHO05D007171 1.0e-123 447.6 303 70.3
Atru.chr13.183 Acer truncatum HOM05D005792 ORTHO05D007171 1.3e-123 447.2 306 68.3
Aqoxy6G01867 Aquilegia oxysepala HOM05D005792 ORTHO05D007171 1.3e-123 447.2 306 67.6
vmacro21840 Vaccinium macrocarpon HOM05D005792 ORTHO05D007171 2.3e-123 446.4 340 63.8
HanXRQChr14g0429001 Helianthus annuus HOM05D005792 ORTHO05D007171 3.0e-123 446.0 384 58.9
Glyma.04G019600 Glycine max HOM05D005792 ORTHO05D007171 3.9e-123 445.7 315 68.9
Thhalv10018917m.g Eutrema salsugineum HOM05D005792 ORTHO05D007171 6.6e-123 444.9 302 68.2
Sp5g31280 Schrenkiella parvula HOM05D005792 ORTHO05D007171 8.6e-123 444.5 300 70.3
Carub.0002s2304 Capsella rubella HOM05D005792 ORTHO05D007171 1.5e-122 443.7 305 67.9
AUR62013837 Chenopodium quinoa HOM05D005792 ORTHO05D007171 5.6e-122 441.8 303 68.6
Hund05134 Selenicereus undatus HOM05D005792 ORTHO05D007171 5.6e-122 441.8 307 67.1
Solyc12g094450.3 Solanum lycopersicum HOM05D005792 ORTHO05D007171 1.2e-121 440.7 306 68.3
CSS0018708 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.6e-121 440.3 308 68.2
Cfa014030 Carpinus fangiana HOM05D000201 ORTHO05D004673 1.6e-121 440.3 281 74.4
Sopen12g031340 Solanum pennellii HOM05D005792 ORTHO05D007171 2.8e-121 439.5 306 68.3
CARHR069700 Cardamine hirsuta HOM05D005792 ORTHO05D007171 3.6e-121 439.1 305 67.9
ECA238G1749 Erigeron canadensis HOM05D005792 ORTHO05D007171 3.6e-121 439.1 302 68.2
CSS0011850 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 4.7e-121 438.7 308 67.2
unitig_747.g21523 Utricularia gibba HOM05D005792 ORTHO05D007171 4.7e-121 438.7 307 67.4
arahy.Tifrunner.gnm1.ann1.NZM2IS Arachis hypogaea HOM05D005792 ORTHO05D007171 6.2e-121 438.3 340 63.8
Lsat_1_v5_gn_2_5940 Lactuca sativa HOM05D005792 ORTHO05D007171 6.2e-121 438.3 337 64.4
Lj4C15T2 Lonicera japonica HOM05D005792 ORTHO05D007171 8.1e-121 438.0 309 68.6
Nn5g30890 Nelumbo nucifera HOM05D005792 ORTHO05D007171 1.4e-120 437.2 310 67.4
Peaxi162Scf00064g00910 Petunia axillaris HOM05D005792 ORTHO05D007171 1.4e-120 437.2 310 68.4
Duzib116G0262 Durio zibethinus HOM05D005792 ORTHO05D007171 6.8e-120 434.9 280 73.6
CSS0016825 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.2e-119 434.1 313 67.1
Cc10_g00990 Coffea canephora HOM05D005792 ORTHO05D007171 4.4e-119 432.2 320 66.2
A07p41720 Brassica napus HOM05D005792 ORTHO05D007171 7.6e-119 431.4 305 68.5
BraA07t31701Z Brassica rapa HOM05D005792 ORTHO05D007171 2.9e-118 429.5 305 67.9
SalBow7G0964 Salvia bowleyana HOM05D005792 ORTHO05D007171 3.8e-118 429.1 296 67.2
Haze_22736 Corylus avellana HOM05D005792 ORTHO05D007171 6.4e-118 428.3 346 62.4
PSO541G2987 Papaver somniferum HOM05D005792 ORTHO05D007171 6.4e-118 428.3 303 66.7
PGSC0003DMG400029326 Solanum tuberosum HOM05D005792 ORTHO05D007171 6.4e-118 428.3 335 62.7
C06p50100 Brassica napus HOM05D005792 ORTHO05D007171 8.4e-118 427.9 305 67.5
Gohir.A05G255200 Gossypium hirsutum HOM05D005792 ORTHO05D007171 5.4e-117 425.2 314 66.6
BcaNung05119 Brassica carinata HOM05D005792 ORTHO05D007171 3.9e-115 419.1 305 66.2
Rhsim06G0009800 Rhododendron simsii HOM05D005792 ORTHO05D007171 9.6e-114 414.5 310 64.8
Os09g0544900 Oryza sativa ssp. japonica HOM05D005792 ORTHO05D007171 1.4e-112 410.6 312 64.4
DCAR_016749 Daucus carota HOM05D005792 ORTHO05D007171 5.8e-111 405.2 369 57.2
MBI08_g05391_MAGBIO Magnolia biondii HOM05D005792 ORTHO05D007171 7.6e-111 404.8 283 70.0
SGA_v2.0_scaffold351G49656 Striga asiatica HOM05D005792 ORTHO05D007171 7.6e-111 404.8 316 64.2
Actinidia15473 Actinidia chinensis HOM05D005792 ORTHO05D007171 9.9e-111 404.4 329 61.1
Aa31LG4G6270 Aethionema arabicum HOM05D005792 ORTHO05D007171 1.3e-110 404.1 305 63.6
FAN27G1567 Fragaria x ananassa HOM05D000201 ORTHO05D004673 8.4e-110 401.4 282 71.3
BolC6t40050H Brassica oleracea HOM05D005792 ORTHO05D007171 9.3e-109 397.9 283 68.2
FAN15G3656 Fragaria x ananassa HOM05D000201 ORTHO05D004673 1.2e-108 397.5 282 71.3
TAR625G0413 Trochodendron aralioides HOM05D005792 ORTHO05D007171 2.1e-108 396.7 285 70.9
ClCG08G013930 Citrullus lanatus HOM05D005792 ORTHO05D007171 1.7e-107 393.7 348 57.8
COL.COLO4_26053 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.4e-96 357.5 314 58.3
DCAR_013899 Daucus carota HOM05D005792 ORTHO05D007171 4.0e-96 355.9 309 58.3
Ah.11g040640 Amaranthus hybridus HOM05D005792 ORTHO05D007171 1.5e-95 354.0 304 57.2
Pp3c4_24330 Physcomitrium patens HOM05D005792 ORTHO05D007171 5.8e-95 352.1 320 55.3
BcaC08g47109 Brassica carinata HOM05D005792 ORTHO05D007171 1.1e-93 347.8 297 58.9
Nitab4.5_0000588g0300 Nicotiana tabacum HOM05D005792 ORTHO05D007171 1.9e-93 347.1 306 58.2
PSO675G2870 Papaver somniferum HOM05D005792 ORTHO05D007171 2.7e-92 343.2 303 56.4
Haze_22722 Corylus avellana HOM05D005792 ORTHO05D007171 1.4e-88 330.9 282 59.6
Gohir.D02G118150 Gossypium hirsutum HOM05D005792 ORTHO05D007171 3.4e-87 326.2 224 69.2
SHI08027 Sapria himalayana HOM05D005792 ORTHO05D007171 3.8e-86 322.8 298 53.0
Zm00001eb104070 Zea mays HOM05D005792 ORTHO05D007171 8.4e-86 321.6 224 68.3
SMO174G0111 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 5.5e-85 318.9 295 55.3
AUR62036768 Chenopodium quinoa HOM05D005792 ORTHO05D007171 2.7e-84 316.6 283 57.2
Phvul.009G020900 Phaseolus vulgaris HOM05D005792 ORTHO05D007171 2.7e-84 316.6 222 67.1
Mapoly0135s0031 Marchantia polymorpha HOM05D005792 ORTHO05D007171 2.7e-76 290.0 308 48.7
arahy.Tifrunner.gnm1.ann1.CIDL5D Arachis hypogaea HOM05D005792 ORTHO05D007171 6.3e-73 278.9 201 65.2
MSTRG.25290 Avicennia marina HOM05D005792 ORTHO05D007171 1.2e-71 274.6 205 63.4
TAR625G0324 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.0e-70 271.6 167 78.4
Oeu021471.1 Olea europaea HOM05D005792 ORTHO05D007171 1.2e-68 264.6 198 63.6
ATR0661G150 Amborella trichopoda HOM05D005792 ORTHO05D007171 2.7e-68 263.5 192 67.7
Zm00001eb321160 Zea mays HOM05D005792 ORTHO05D007171 4.6e-68 262.7 230 57.4
SEGI_22358 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 1.4e-67 261.2 200 63.5
Sabra02G0010800 Salix brachista HOM05D005792 ORTHO05D007171 2.6e-63 246.9 245 55.9
TPR.G38109 Trifolium pratense HOM05D005792 ORTHO05D007171 3.5e-55 219.9 309 42.7
AagrBONN_evm.TU.Sc2ySwM_117.3246 Anthoceros agrestis HOM05D005792 ORTHO05D007171 6.5e-54 215.7 213 52.1
CBR_g50912 Chara braunii HOM05D005792 ORTHO05D007171 2.3e-51 207.2 396 36.1
TPR.G753 Trifolium pratense HOM05D005792 ORTHO05D007171 2.6e-50 203.8 137 67.2
Actinidia17028 Actinidia chinensis HOM05D005792 ORTHO05D007171 4.8e-49 199.5 169 58.0
CDE05G1591 Ceratophyllum demersum HOM05D005792 ORTHO05D007171 2.9e-46 190.3 154 55.2
CSS0030340 Camellia sinensis var. sinensis HOM05D005792 ORTHO05D007171 1.6e-39 167.9 131 64.9
Haze_26844 Corylus avellana HOM05D005792 ORTHO05D007171 2.9e-38 163.7 299 36.5
Cre06.g308100 Chlamydomonas reinhardtii HOM05D005792 ORTHO05D007171 5.0e-38 162.9 304 34.5
TAR625G0970 Trochodendron aralioides HOM05D005792 ORTHO05D007171 1.0e-35 155.2 112 64.3
HPP92_014386 Vanilla planifolia HOM05D005792 ORTHO05D007171 6.3e-33 146.0 113 59.3
SalBow6G2635 Salvia bowleyana HOM05D005792 ORTHO05D007171 7.3e-29 132.5 83 74.7
Hund05135 Selenicereus undatus HOM05D005792 ORTHO05D007171 1.6e-28 131.3 281 32.0
CBR_g22029 Chara braunii HOM05D005792 ORTHO05D007171 4.6e-23 113.2 145 44.8
SMO174G0016 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 1.3e-14 85.1 77 57.1
Mapoly0033s0029 Marchantia polymorpha HOM05D005792 ORTHO05D007171 5.0e-14 83.2 179 33.5
Sabra02G0010700 Salix brachista HOM05D000201 ORTHO05D000490 6.6e-14 82.8 63 60.3
ATR0661G053 Amborella trichopoda HOM05D005792 ORTHO05D007171 8.1e-12 75.9 52 67.3
COL.COLO4_12452 Corchorus olitorius HOM05D005792 ORTHO05D007171 1.8e-11 74.7 74 54.1
SMO174G0053 Selaginella moellendorffii HOM05D005792 ORTHO05D007171 2.4e-08 64.3 76 48.7
SEGI_02138 Sequoiadendron giganteum HOM05D005792 ORTHO05D007171 5.4e-08 63.2 50 54.0
Cpa.g.sc26.236 Carica papaya HOM05D005792 ORTHO05D007171 6.0e-07 59.7 36 77.8


User provided reference genes

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