Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0291 Punica granatum HOM05D006536 ORTHO05D005877 3.0e-74 282.0 163 100.0
Eucgr.F03431 Eucalyptus grandis HOM05D006536 ORTHO05D005877 6.6e-29 131.3 158 52.5
Cfa020407 Carpinus fangiana HOM05D006536 ORTHO05D005877 1.4e-23 113.6 152 44.1
Dinv26537 Davidia involucrata HOM05D006536 ORTHO05D005877 1.1e-20 104.0 149 44.3
Cfa020408 Carpinus fangiana HOM05D006536 ORTHO05D005877 1.5e-20 103.6 149 41.6
CiPaw.12G126700 Carya illinoinensis HOM05D006536 ORTHO05D005877 3.1e-18 95.9 149 40.3
ClCG10G005660 Citrullus lanatus HOM05D006536 ORTHO05D005877 3.4e-17 92.4 112 43.8
Nitab4.5_0003924g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 9.8e-17 90.9 142 38.7
Sopen08g028810 Solanum pennellii HOM05D006536 ORTHO05D005877 1.7e-16 90.1 104 43.3
Peaxi162Scf00714g00424 Petunia axillaris HOM05D006536 ORTHO05D005877 6.4e-16 88.2 147 39.5
Atru.chr2.3226 Acer truncatum HOM05D001264 ORTHO05D001167 1.1e-15 87.4 101 41.6
Peaxi162Scf00714g00432 Petunia axillaris HOM05D006536 ORTHO05D005877 1.1e-15 87.4 100 47.0
Peaxi162Scf00714g00425 Petunia axillaris HOM05D006536 ORTHO05D005877 1.4e-15 87.0 151 34.4
Peaxi162Scf00057g00136 Petunia axillaris HOM05D006536 ORTHO05D005877 2.4e-15 86.3 147 41.5
MELO3C032238.2 Cucumis melo HOM05D006536 ORTHO05D005877 4.1e-15 85.5 98 40.8
Ciclev10009848m.g Citrus clementina HOM05D007475 ORTHO05D005877 1.2e-14 84.0 143 38.5
CsaV3_3G005360 Cucumis sativus L. HOM05D006536 ORTHO05D005877 1.2e-14 84.0 96 40.6
SHI26637 Sapria himalayana HOM05D006536 ORTHO05D005877 1.2e-14 84.0 148 36.5
SHI26633 Sapria himalayana HOM05D006536 ORTHO05D005877 2.0e-14 83.2 150 36.7
PGR083G2006 Punica granatum HOM05D006536 ORTHO05D005877 2.7e-14 82.8 160 36.2
SHI26644 Sapria himalayana HOM05D006536 ORTHO05D005877 2.7e-14 82.8 151 37.1
Sopen08g028800 Solanum pennellii HOM05D006536 ORTHO05D005877 3.5e-14 82.4 103 38.8
Migut.H00699 Erythranthe guttata HOM05D006536 ORTHO05D005877 1.0e-13 80.9 141 34.8
SHI31832 Sapria himalayana HOM05D006536 ORTHO05D005877 1.0e-13 80.9 102 40.2
Sed0024994 Sechium edule HOM05D006536 ORTHO05D005877 1.0e-13 80.9 149 36.2
CAN.G981.16 Capsicum annuum HOM05D006536 ORTHO05D005877 1.3e-13 80.5 149 30.9
Peaxi162Scf00450g00854 Petunia axillaris HOM05D006536 ORTHO05D005877 1.3e-13 80.5 144 37.5
Solyc08g080480.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 1.3e-13 80.5 141 33.3
Nitab4.5_0006023g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.3e-13 79.7 146 37.7
ClCG10G005680 Citrullus lanatus HOM05D006536 ORTHO05D005877 5.0e-13 78.6 147 35.4
SHI26638 Sapria himalayana HOM05D006536 ORTHO05D005877 5.0e-13 78.6 148 35.1
Eucgr.F00976 Eucalyptus grandis HOM05D006536 ORTHO05D005877 8.6e-13 77.8 151 38.4
QL08p013125 Quercus lobata HOM05D009374 ORTHO05D005877 8.6e-13 77.8 146 33.6
CAN.G981.18 Capsicum annuum HOM05D006536 ORTHO05D005877 2.5e-12 76.3 139 32.4
Nitab4.5_0005213g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.5e-12 76.3 153 32.0
Peaxi162Scf00450g00873 Petunia axillaris HOM05D006536 ORTHO05D005877 2.5e-12 76.3 147 36.7
MELO3C025418.2 Cucumis melo HOM05D006536 ORTHO05D005877 4.3e-12 75.5 148 33.1
Nitab4.5_0000397g0170 Nicotiana tabacum HOM05D006536 ORTHO05D005877 4.3e-12 75.5 147 38.8
QL08p012979 Quercus lobata HOM05D006536 ORTHO05D005877 4.3e-12 75.5 147 34.0
Nitab4.5_0000472g0270 Nicotiana tabacum HOM05D006536 ORTHO05D005877 5.6e-12 75.1 147 36.7
vmacro11763 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 9.5e-12 74.3 146 34.9
ECA236G4404 Erigeron canadensis HOM05D009374 ORTHO05D012864 1.2e-11 73.9 157 33.8
TWI39G0980 Tripterygium wilfordii HOM05D006536 ORTHO05D005877 1.2e-11 73.9 150 34.7
Solyc08g080490.3 Solanum lycopersicum HOM05D006536 ORTHO05D005877 1.6e-11 73.6 148 31.8
COL.COLO4_09579 Corchorus olitorius HOM05D006536 ORTHO05D005877 2.1e-11 73.2 102 40.2
SGA_v2.0_scaffold13G06717 Striga asiatica HOM05D006536 ORTHO05D005877 2.1e-11 73.2 109 42.2
ClCG09G018590 Citrullus lanatus HOM05D006536 ORTHO05D005877 4.7e-11 72.0 104 39.4
vmacro11762 Vaccinium macrocarpon HOM05D006536 ORTHO05D005877 6.2e-11 71.6 149 34.2
CAN.G981.17 Capsicum annuum HOM05D006536 ORTHO05D005877 8.0e-11 71.2 150 31.3
Lsat_1_v5_gn_7_106501 Lactuca sativa HOM05D009374 ORTHO05D012864 1.1e-10 70.9 152 34.9
PGR083G1686 Punica granatum HOM05D006536 ORTHO05D005877 1.1e-10 70.9 155 33.5
SGA_v2.0_scaffold13G06718 Striga asiatica HOM05D006536 ORTHO05D005877 1.1e-10 70.9 111 39.6
HanXRQChr13g0408641 Helianthus annuus HOM05D009374 ORTHO05D005877 1.4e-10 70.5 150 34.0
Eucgr.F00977 Eucalyptus grandis HOM05D006536 ORTHO05D005877 1.8e-10 70.1 149 35.6
Dinv40717 Davidia involucrata HOM05D006536 ORTHO05D005877 2.3e-10 69.7 119 39.5
Hma1.2p1_0745F.1_g212040 Hydrangea macrophylla HOM05D006536 ORTHO05D005877 2.3e-10 69.7 152 30.3
CANSAT11G1392 Cannabis sativa HOM05D006536 ORTHO05D005877 4.0e-10 68.9 103 34.0
HanXRQChr11g0332911 Helianthus annuus HOM05D009374 ORTHO05D012864 5.2e-10 68.6 157 31.2
PSO541G5532 Papaver somniferum HOM05D006536 ORTHO05D005877 5.2e-10 68.6 148 35.1
Peaxi162Scf00450g00816 Petunia axillaris HOM05D006536 ORTHO05D005877 5.2e-10 68.6 147 38.1
Cpa.g.sc97.59 Carica papaya HOM05D007475 ORTHO05D009529 6.8e-10 68.2 104 38.5
Migut.J01035 Erythranthe guttata HOM05D006536 ORTHO05D005877 6.8e-10 68.2 111 38.7
HanXRQChr11g0332931 Helianthus annuus HOM05D009374 ORTHO05D012864 8.9e-10 67.8 160 31.9
CDE05G1907 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 1.5e-09 67.0 152 31.6
Nitab4.5_0001479g0050 Nicotiana tabacum HOM05D006536 ORTHO05D005877 1.5e-09 67.0 147 34.7
SGA_v2.0_scaffold20G09060 Striga asiatica HOM05D006536 ORTHO05D005877 1.5e-09 67.0 104 34.6
DCAR_022529 Daucus carota HOM05D006536 ORTHO05D005877 2.0e-09 66.6 109 33.9
Nitab4.5_0001479g0060 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.0e-09 66.6 105 39.0
PGR083G0622 Punica granatum HOM05D006536 ORTHO05D005877 2.6e-09 66.2 140 36.4
Thecc.07G051300 Theobroma cacao HOM05D006536 ORTHO05D005877 2.6e-09 66.2 153 31.4
Migut.J01038 Erythranthe guttata HOM05D006536 ORTHO05D005877 3.4e-09 65.9 157 36.9
PSO541G4685 Papaver somniferum HOM05D006536 ORTHO05D005877 3.4e-09 65.9 153 35.9
Nn1g07021 Nelumbo nucifera HOM05D023228 ORTHO05D005877 4.4e-09 65.5 140 36.4
PSO675G9181 Papaver somniferum HOM05D006536 ORTHO05D005877 4.4e-09 65.5 153 35.9
Sopen07g032350 Solanum pennellii HOM05D006536 ORTHO05D005877 4.4e-09 65.5 107 38.3
PSO478G5239 Papaver somniferum HOM05D006536 ORTHO05D005877 5.8e-09 65.1 153 35.9
PSO541G3913 Papaver somniferum HOM05D006536 ORTHO05D005877 5.8e-09 65.1 157 34.4
unitig_8.g4307 Utricularia gibba HOM05D006536 ORTHO05D005877 5.8e-09 65.1 160 33.8
Ciclev10009789m.g Citrus clementina HOM05D007475 ORTHO05D009529 7.5e-09 64.7 158 31.6
ECA236G3141 Erigeron canadensis HOM05D009374 ORTHO05D012864 7.5e-09 64.7 172 33.1
Gohir.A01G075200 Gossypium hirsutum HOM05D015826 ORTHO05D005877 7.5e-09 64.7 150 30.7
ECA236G0204 Erigeron canadensis HOM05D009374 ORTHO05D012864 9.8e-09 64.3 162 30.9
Nitab4.5_0004487g0010 Nicotiana tabacum HOM05D006536 ORTHO05D005877 9.8e-09 64.3 106 38.7
Solyc07g064210.2 Solanum lycopersicum HOM05D006536 ORTHO05D005877 9.8e-09 64.3 148 33.1
CDE11G0553 Ceratophyllum demersum HOM05D006536 ORTHO05D005877 1.3e-08 63.9 152 30.3
Nn1g07017 Nelumbo nucifera HOM05D023228 ORTHO05D005877 1.3e-08 63.9 151 40.4
QL08p013066 Quercus lobata HOM05D006536 ORTHO05D005877 1.3e-08 63.9 111 34.2
Migut.J01041 Erythranthe guttata HOM05D006536 ORTHO05D005877 1.7e-08 63.5 156 38.5
Lsat_1_v5_gn_7_108020 Lactuca sativa HOM05D006536 ORTHO05D005877 1.7e-08 63.5 101 36.6
PSO782G1199 Papaver somniferum HOM05D006536 ORTHO05D005877 1.7e-08 63.5 70 40.0
Manes.03G123318 Manihot esculenta HOM05D006536 ORTHO05D005877 2.2e-08 63.2 147 25.2
PGSC0003DMG400001033 Solanum tuberosum HOM05D006536 ORTHO05D005877 2.2e-08 63.2 107 37.4
HanXRQChr11g0337791 Helianthus annuus HOM05D009374 ORTHO05D012864 2.9e-08 62.8 151 29.8
Nitab4.5_0008018g0020 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.9e-08 62.8 105 38.1
THA.LOC104822213 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.7e-08 62.4 157 33.1
Gohir.D01G062500 Gossypium hirsutum HOM05D015826 ORTHO05D005877 6.4e-08 61.6 150 30.0
Nn1g07020 Nelumbo nucifera HOM05D023228 ORTHO05D005877 8.3e-08 61.2 147 34.7
unitig_744.g24698 Utricularia gibba HOM05D009374 ORTHO05D005877 1.1e-07 60.8 151 33.8
Lsat_1_v5_gn_5_5901 Lactuca sativa HOM05D009374 ORTHO05D005877 1.4e-07 60.5 161 36.6
PSO541G2788 Papaver somniferum HOM05D006536 ORTHO05D005877 1.9e-07 60.1 147 38.1
PGR083G0669 Punica granatum HOM05D006536 ORTHO05D005877 2.4e-07 59.7 158 32.9
Cpa.g.sc10.244 Carica papaya HOM05D007475 ORTHO05D009529 3.2e-07 59.3 156 32.1
Gorai.002G083200 Gossypium raimondii HOM05D015826 ORTHO05D005877 3.2e-07 59.3 150 29.3
THA.LOC104799882 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 3.2e-07 59.3 152 34.2
COL.COLO4_15402 Corchorus olitorius HOM05D006536 ORTHO05D005877 4.1e-07 58.9 148 28.4
THA.LOC104799881 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 4.1e-07 58.9 155 32.9
ATR0686G133 Amborella trichopoda HOM05D031825 ORTHO05D005877 5.4e-07 58.5 143 30.1
COL.COLO4_09580 Corchorus olitorius HOM05D015826 ORTHO05D005877 5.4e-07 58.5 148 27.0
Nn1g07014 Nelumbo nucifera HOM05D023228 ORTHO05D005877 7.1e-07 58.2 73 42.5
Duzib268G0059 Durio zibethinus HOM05D006536 ORTHO05D005877 9.2e-07 57.8 152 26.3
Migut.J01036 Erythranthe guttata HOM05D006536 ORTHO05D005877 9.2e-07 57.8 110 32.7
SHI27896 Sapria himalayana HOM05D006536 ORTHO05D005877 9.2e-07 57.8 126 34.1
THA.LOC104809798 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 9.2e-07 57.8 108 33.3
Cpa.g.sc10.249 Carica papaya HOM05D007475 ORTHO05D009529 1.2e-06 57.4 155 31.6
Potri.011G134400 Populus trichocarpa HOM05D006536 ORTHO05D005877 1.2e-06 57.4 139 31.7
Potri.011G134500 Populus trichocarpa HOM05D006536 ORTHO05D005877 1.2e-06 57.4 139 31.7
Sabra11G0120700 Salix brachista HOM05D006536 ORTHO05D005877 1.2e-06 57.4 135 29.6
THA.LOC104813415 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.2e-06 57.4 156 30.8
THA.LOC104817654 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 1.2e-06 57.4 151 31.8
Manes.03G123600 Manihot esculenta HOM05D006536 ORTHO05D005877 1.6e-06 57.0 142 26.1
A03p57110 Brassica napus HOM05D007475 ORTHO05D009529 2.1e-06 56.6 158 31.6
Nitab4.5_0001479g0070 Nicotiana tabacum HOM05D006536 ORTHO05D005877 2.1e-06 56.6 124 37.9
SHI26699 Sapria himalayana HOM05D006536 ORTHO05D005877 2.1e-06 56.6 126 34.1
CANSAT54G1080 Cannabis sativa HOM05D006536 ORTHO05D005877 2.7e-06 56.2 155 31.6
THA.LOC104817656 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.7e-06 56.2 154 31.8
THA.LOC104822214 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.7e-06 56.2 154 31.8
THA.LOC104822215 Tarenaya hassleriana HOM05D007475 ORTHO05D009529 2.7e-06 56.2 154 31.8
Cpa.g.sc10.251 Carica papaya HOM05D007475 ORTHO05D009529 4.6e-06 55.5 162 29.6
Thhalv10026791m.g Eutrema salsugineum HOM05D007475 ORTHO05D009529 4.6e-06 55.5 163 29.4
MBI18_g21250_MAGBIO Magnolia biondii HOM05D006536 ORTHO05D005877 4.6e-06 55.5 106 34.0
SHI33826 Sapria himalayana HOM05D006536 ORTHO05D005877 4.6e-06 55.5 78 38.5
Solyc07g064220.1 Solanum lycopersicum HOM05D006536 ORTHO05D005877 4.6e-06 55.5 107 32.7
Sopen07g032360 Solanum pennellii HOM05D006536 ORTHO05D005877 4.6e-06 55.5 149 28.9
SGA_v2.0_scaffold75G24748 Striga asiatica HOM05D006536 ORTHO05D005877 4.6e-06 55.5 72 36.1
Lsat_1_v5_gn_7_93341 Lactuca sativa HOM05D009374 ORTHO05D012864 6.0e-06 55.1 117 32.5
Lsat_1_v5_gn_7_93361 Lactuca sativa HOM05D009374 ORTHO05D012864 6.0e-06 55.1 117 32.5
Lsat_1_v5_gn_7_93381 Lactuca sativa HOM05D009374 ORTHO05D012864 6.0e-06 55.1 117 32.5
Lsat_1_v5_gn_7_93441 Lactuca sativa HOM05D009374 ORTHO05D012864 6.0e-06 55.1 117 32.5
Lsat_1_v5_gn_7_93500 Lactuca sativa HOM05D009374 ORTHO05D012864 6.0e-06 55.1 117 32.5
Lsat_1_v5_gn_7_93520 Lactuca sativa HOM05D009374 ORTHO05D012864 6.0e-06 55.1 117 32.5
Carub.0007s1369 Capsella rubella HOM05D007475 ORTHO05D009529 7.8e-06 54.7 150 29.3


User provided reference genes

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