Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0258 Punica granatum HOM05D000038 ORTHO05D003992 1.3e-88 329.7 165 100.0
PGR102G3316 Punica granatum HOM05D000038 ORTHO05D003992 1.6e-19 100.1 80 72.5
RcHm_v2.0_Chr6g0272421 Rosa chinensis HOM05D000038 ORTHO05D003992 1.4e-18 97.1 136 44.9
FAN27G0433 Fragaria x ananassa HOM05D000038 ORTHO05D003992 2.4e-18 96.3 131 45.8
FvH4_2g12390 Fragaria vesca HOM05D000038 ORTHO05D003992 3.1e-18 95.9 131 46.6
FAN24G0810 Fragaria x ananassa HOM05D000038 ORTHO05D003992 3.1e-18 95.9 131 46.6
Prupe.8G051900 Prunus persica HOM05D000038 ORTHO05D003992 4.0e-18 95.5 139 45.3
QL02p034403 Quercus lobata HOM05D000038 ORTHO05D003992 4.0e-18 95.5 135 43.0
FAN20G0659 Fragaria x ananassa HOM05D000038 ORTHO05D003992 2.0e-17 93.2 131 45.0
MD05G1039400 Malus domestica HOM05D000038 ORTHO05D003992 3.4e-17 92.4 114 48.2
COL.COLO4_35753 Corchorus olitorius HOM05D000038 ORTHO05D003992 7.6e-17 91.3 135 43.0
Glyma.20G173600 Glycine max HOM05D000038 ORTHO05D003992 1.3e-16 90.5 140 42.9
Eucgr.F04152 Eucalyptus grandis HOM05D000038 ORTHO05D003992 1.7e-16 90.1 121 48.8
CARHR033770 Cardamine hirsuta HOM05D000038 ORTHO05D003992 4.9e-16 88.6 141 41.8
Thhalv10006801m.g Eutrema salsugineum HOM05D000038 ORTHO05D003992 4.9e-16 88.6 140 42.9
MD10G1044900 Malus domestica HOM05D000038 ORTHO05D003992 1.1e-15 87.4 137 40.1
AL1G48860 Arabidopsis lyrata HOM05D000038 ORTHO05D003992 1.9e-15 86.7 138 40.6
Duzib116G0534 Durio zibethinus HOM05D000038 ORTHO05D003992 1.9e-15 86.7 129 44.2
AT1G34300 Arabidopsis thaliana HOM05D000038 ORTHO05D003992 2.4e-15 86.3 136 42.6
CSS0028278 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D003992 5.5e-15 85.1 111 44.1
Cpa.g.sc66.110 Carica papaya HOM05D000038 ORTHO05D003992 9.3e-15 84.3 139 43.9
Dinv41676 Davidia involucrata HOM05D000038 ORTHO05D003992 9.3e-15 84.3 110 42.7
Aa31LG6G8390 Aethionema arabicum HOM05D000038 ORTHO05D003992 1.2e-14 84.0 137 40.1
Haze_17892 Corylus avellana HOM05D000038 ORTHO05D003992 1.2e-14 84.0 138 42.8
arahy.Tifrunner.gnm1.ann1.37WGC5 Arachis hypogaea HOM05D000038 ORTHO05D003992 1.6e-14 83.6 138 39.1
arahy.Tifrunner.gnm1.ann1.CNY52L Arachis hypogaea HOM05D000038 ORTHO05D003992 1.6e-14 83.6 138 39.1
Dinv41677 Davidia involucrata HOM05D000038 ORTHO05D003992 1.6e-14 83.6 142 39.4
Haze_17893 Corylus avellana HOM05D000038 ORTHO05D003992 2.1e-14 83.2 106 48.1
Ah.16g109760 Amaranthus hybridus HOM05D000038 ORTHO05D003992 2.7e-14 82.8 129 41.1
arahy.Tifrunner.gnm1.ann1.QZI8B0 Arachis hypogaea HOM05D000038 ORTHO05D003992 2.7e-14 82.8 138 39.1
Carub.0001s3245 Capsella rubella HOM05D000038 ORTHO05D003992 3.5e-14 82.4 110 44.5
Cfa018214 Carpinus fangiana HOM05D000038 ORTHO05D003992 3.5e-14 82.4 134 41.0
Eucgr.F04146 Eucalyptus grandis HOM05D000038 ORTHO05D003992 3.5e-14 82.4 114 44.7
Ca_26648_v3 Cicer arietinum L. HOM05D000038 ORTHO05D003992 6.0e-14 81.6 112 43.8
MD05G1039500 Malus domestica HOM05D000038 ORTHO05D003992 6.0e-14 81.6 138 40.6
Os03g0838100 Oryza sativa ssp. japonica HOM05D000038 ORTHO05D003992 7.9e-14 81.3 100 46.0
Sed0009085 Sechium edule HOM05D000038 ORTHO05D003992 7.9e-14 81.3 138 37.7
CSS0036562 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D003992 1.0e-13 80.9 146 41.8
AUR62023590 Chenopodium quinoa HOM05D000038 ORTHO05D003992 1.0e-13 80.9 109 43.1
Potri.013G115700 Populus trichocarpa HOM05D000038 ORTHO05D003992 1.0e-13 80.9 137 40.9
TWI34G0818 Tripterygium wilfordii HOM05D000038 ORTHO05D003992 1.0e-13 80.9 112 42.0
Nitab4.5_0006035g0010 Nicotiana tabacum HOM05D000038 ORTHO05D003992 1.3e-13 80.5 116 40.5
AUR62004671 Chenopodium quinoa HOM05D000038 ORTHO05D003992 1.8e-13 80.1 110 42.7
Migut.C01210 Erythranthe guttata HOM05D000038 ORTHO05D003992 3.0e-13 79.3 140 35.7
Manes.13G148400 Manihot esculenta HOM05D000038 ORTHO05D003992 3.0e-13 79.3 138 38.4
Cfa018213 Carpinus fangiana HOM05D000038 ORTHO05D003992 3.9e-13 79.0 106 47.2
Cc03_g13490 Coffea canephora HOM05D000038 ORTHO05D003992 3.9e-13 79.0 144 38.9
C06p11690 Brassica napus HOM05D000038 ORTHO05D003992 5.1e-13 78.6 124 45.2
ClCG08G008710 Citrullus lanatus HOM05D000038 ORTHO05D003992 5.1e-13 78.6 136 39.0
Medtr6g043790 Medicago truncatula HOM05D000038 ORTHO05D003992 5.1e-13 78.6 138 40.6
Potri.019G086200 Populus trichocarpa HOM05D000038 ORTHO05D003992 5.1e-13 78.6 145 36.6
CiPaw.15G006000 Carya illinoinensis HOM05D000038 ORTHO05D003992 6.7e-13 78.2 134 39.6
Ca_10631_v3 Cicer arietinum L. HOM05D000038 ORTHO05D003992 6.7e-13 78.2 130 40.0
Cc00_g12500 Coffea canephora HOM05D000038 ORTHO05D003992 6.7e-13 78.2 144 38.2
Rhsim06G0100200 Rhododendron simsii HOM05D000038 ORTHO05D003992 6.7e-13 78.2 111 45.0
Rhsim11G0063600 Rhododendron simsii HOM05D000038 ORTHO05D003992 6.7e-13 78.2 144 40.3
A03p28660 Brassica napus HOM05D000038 ORTHO05D003992 8.7e-13 77.8 102 39.2
CAN.G571.3 Capsicum annuum HOM05D000038 ORTHO05D003992 8.7e-13 77.8 115 40.0
Glyma.16G157400 Glycine max HOM05D000038 ORTHO05D003992 8.7e-13 77.8 138 40.6
Potri.013G115800 Populus trichocarpa HOM05D000038 ORTHO05D003992 8.7e-13 77.8 143 37.1
PGSC0003DMG400030209 Solanum tuberosum HOM05D000038 ORTHO05D003992 8.7e-13 77.8 141 38.3
Lj4P518T15 Lonicera japonica HOM05D000038 ORTHO05D003992 1.1e-12 77.4 116 37.9
Solyc11g013880.1 Solanum lycopersicum HOM05D000038 ORTHO05D003992 1.1e-12 77.4 141 37.6
Sopen11g008800 Solanum pennellii HOM05D000038 ORTHO05D003992 1.1e-12 77.4 141 37.6
BcaC01g04709 Brassica carinata HOM05D000038 ORTHO05D003992 1.5e-12 77.0 102 39.2
C03p34650 Brassica napus HOM05D000038 ORTHO05D003992 1.5e-12 77.0 102 39.2
BolC3t15776H Brassica oleracea HOM05D000038 ORTHO05D003992 1.5e-12 77.0 102 39.2
MELO3C019944.2 Cucumis melo HOM05D000038 ORTHO05D003992 1.5e-12 77.0 113 41.6
Psat0ss3101g0040 Pisum sativum HOM05D000038 ORTHO05D003992 1.5e-12 77.0 133 39.8
Sp6g07970 Schrenkiella parvula HOM05D000038 ORTHO05D003992 1.5e-12 77.0 110 41.8
Zm00001eb063900 Zea mays HOM05D000038 ORTHO05D003992 1.5e-12 77.0 99 42.4
GSVIVG01036817001 Vitis vinifera HOM05D000038 ORTHO05D003992 1.9e-12 76.6 141 39.0
Nitab4.5_0003302g0070 Nicotiana tabacum HOM05D000038 ORTHO05D003992 2.5e-12 76.3 112 38.4
CiPaw.15G005900 Carya illinoinensis HOM05D000038 ORTHO05D003992 3.3e-12 75.9 137 39.4
Glyma.02G075600 Glycine max HOM05D000038 ORTHO05D003992 3.3e-12 75.9 139 40.3
Gohir.A02G061300 Gossypium hirsutum HOM05D000038 ORTHO05D003992 3.3e-12 75.9 121 41.3
Gohir.D02G066700 Gossypium hirsutum HOM05D000038 ORTHO05D003992 3.3e-12 75.9 150 37.3
Gorai.005G075600 Gossypium raimondii HOM05D000038 ORTHO05D003992 3.3e-12 75.9 150 37.3
Manes.18G098200 Manihot esculenta HOM05D000038 ORTHO05D003992 4.3e-12 75.5 127 42.5
A08p08290 Brassica napus HOM05D000038 ORTHO05D003992 5.6e-12 75.1 140 40.0
BraA08t32847Z Brassica rapa HOM05D000038 ORTHO05D003992 5.6e-12 75.1 140 40.0
Ciclev10003606m.g Citrus clementina HOM05D000038 ORTHO05D003992 5.6e-12 75.1 110 40.0
Dinv38040 Davidia involucrata HOM05D000013 ORTHO05D003992 5.6e-12 75.1 111 41.4
VMungo0464G0004 Vigna mungo HOM05D000038 ORTHO05D003992 5.6e-12 75.1 136 39.7
EL10Ac1g00058 Beta vulgaris HOM05D000038 ORTHO05D003992 7.4e-12 74.7 134 36.6
CSS0041724 Camellia sinensis var. sinensis HOM05D000038 ORTHO05D003992 7.4e-12 74.7 116 44.0
Lj5g0016167 Lotus japonicus HOM05D000038 ORTHO05D003992 9.6e-12 74.3 116 43.1
Nitab4.5_0000923g0140 Nicotiana tabacum HOM05D000038 ORTHO05D003992 9.6e-12 74.3 114 39.5
BcaC08g43788 Brassica carinata HOM05D000038 ORTHO05D003992 1.3e-11 73.9 124 43.5
BolC6t36298H Brassica oleracea HOM05D000038 ORTHO05D003992 1.3e-11 73.9 124 43.5
CiPaw.16G005200 Carya illinoinensis HOM05D000038 ORTHO05D003992 1.3e-11 73.9 135 40.7
HanXRQChr04g0111601 Helianthus annuus HOM05D000038 ORTHO05D003992 1.3e-11 73.9 117 39.3
Lalb_Chr01g0009931 Lupinus albus HOM05D000038 ORTHO05D003992 1.3e-11 73.9 137 37.2
TWI34G0484 Tripterygium wilfordii HOM05D000038 ORTHO05D003992 1.3e-11 73.9 110 40.9
A09p32150 Brassica napus HOM05D000038 ORTHO05D003992 1.6e-11 73.6 123 41.5
Potri.019G086400 Populus trichocarpa HOM05D000038 ORTHO05D003992 1.6e-11 73.6 131 38.9
SalBow7G4436 Salvia bowleyana HOM05D000038 ORTHO05D003992 1.6e-11 73.6 138 34.8
BolC8t47868H Brassica oleracea HOM05D000038 ORTHO05D003992 2.1e-11 73.2 135 39.3
Peaxi162Scf00228g00036 Petunia axillaris HOM05D000038 ORTHO05D003992 2.1e-11 73.2 113 38.1
BraA03t12065Z Brassica rapa HOM05D000038 ORTHO05D003992 2.8e-11 72.8 102 37.3
ECA247G3329 Erigeron canadensis HOM05D000038 ORTHO05D003992 2.8e-11 72.8 136 36.8
CsaV3_6G004740 Cucumis sativus L. HOM05D000038 ORTHO05D003992 6.2e-11 71.6 136 36.0
Aqoxy5G02606 Aquilegia oxysepala HOM05D000038 ORTHO05D003992 8.1e-11 71.2 100 42.0
Sabra13G0098000 Salix brachista HOM05D000038 ORTHO05D003992 8.1e-11 71.2 112 40.2
Aqoxy5G02594 Aquilegia oxysepala HOM05D000038 ORTHO05D003992 1.1e-10 70.9 100 42.0
DCAR_014271 Daucus carota HOM05D000038 ORTHO05D003992 1.1e-10 70.9 130 33.8
Sc23g0001070 Simmondsia chinensis HOM05D000038 ORTHO05D003992 1.1e-10 70.9 136 35.3
BraA09t38761Z Brassica rapa HOM05D000038 ORTHO05D003992 1.4e-10 70.5 123 40.7
THA.LOC104816209 Tarenaya hassleriana HOM05D000038 ORTHO05D003992 1.4e-10 70.5 117 41.9
Lj4P518T10 Lonicera japonica HOM05D000038 ORTHO05D003992 1.8e-10 70.1 116 37.1
Manes.02G189400 Manihot esculenta HOM05D000038 ORTHO05D003992 2.4e-10 69.7 126 40.5
THA.LOC104813095 Tarenaya hassleriana HOM05D000038 ORTHO05D003992 2.4e-10 69.7 120 44.2
CANSAT25G1886 Cannabis sativa HOM05D000038 ORTHO05D003992 3.1e-10 69.3 111 41.4
Duzib116G0598 Durio zibethinus HOM05D000038 ORTHO05D003992 3.1e-10 69.3 152 34.9
TAR628G0712 Trochodendron aralioides HOM05D000038 ORTHO05D003992 3.1e-10 69.3 139 32.4
MSTRG.1495 Avicennia marina HOM05D000038 ORTHO05D003992 4.0e-10 68.9 113 38.9
BcaB01g02782 Brassica carinata HOM05D000038 ORTHO05D003992 4.0e-10 68.9 96 42.7
Rhsim11G0063500 Rhododendron simsii HOM05D000038 ORTHO05D003992 5.3e-10 68.6 115 40.0
COL.COLO4_07151 Corchorus olitorius HOM05D000038 ORTHO05D003992 6.9e-10 68.2 96 42.7
BcaC08g43330 Brassica carinata HOM05D000072 ORTHO05D003992 9.0e-10 67.8 124 41.9
BraA06t23437Z Brassica rapa HOM05D000072 ORTHO05D003992 9.0e-10 67.8 126 42.9
Ciclev10025750m.g Citrus clementina HOM05D000038 ORTHO05D003992 9.0e-10 67.8 120 35.0
QL02p034442 Quercus lobata HOM05D000038 ORTHO05D003992 9.0e-10 67.8 96 39.6
Sabra19G0096900 Salix brachista HOM05D000038 ORTHO05D003992 9.0e-10 67.8 117 39.3
Hma1.2p1_1102F.1_g257220 Hydrangea macrophylla HOM05D000038 ORTHO05D003992 1.5e-09 67.0 109 41.3
PSO017G3394 Papaver somniferum HOM05D000038 ORTHO05D003992 1.5e-09 67.0 140 31.4
Medtr6g043510 Medicago truncatula HOM05D000038 ORTHO05D003992 2.0e-09 66.6 134 35.8
MBI09_g01925_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D003992 2.6e-09 66.2 112 36.6
SGA_v2.0_scaffold118G32454 Striga asiatica HOM05D000038 ORTHO05D003992 2.6e-09 66.2 113 37.2
Atru.chr13.1864 Acer truncatum HOM05D000038 ORTHO05D003992 3.4e-09 65.9 115 41.7
TWI23G1205 Tripterygium wilfordii HOM05D000038 ORTHO05D007763 3.4e-09 65.9 106 37.7
Sed0009498 Sechium edule HOM05D000038 ORTHO05D003992 4.5e-09 65.5 119 35.3
MSTRG.25428 Avicennia marina HOM05D000038 ORTHO05D003992 5.8e-09 65.1 139 34.5
SGA_v2.0_scaffold24G10524 Striga asiatica HOM05D000038 ORTHO05D003992 5.8e-09 65.1 112 37.5
MSTRG.25426 Avicennia marina HOM05D000038 ORTHO05D003992 7.6e-09 64.7 106 37.7
BcaB04g17887 Brassica carinata HOM05D000038 ORTHO05D003992 1.0e-08 64.3 122 38.5
AUR62004672 Chenopodium quinoa HOM05D000038 ORTHO05D003992 1.3e-08 63.9 109 35.8
Glyma.16G157500 Glycine max HOM05D000038 ORTHO05D003992 1.3e-08 63.9 112 39.3
Potri.015G026300 Populus trichocarpa HOM05D000038 ORTHO05D007763 1.3e-08 63.9 120 35.8
QL12p025716 Quercus lobata HOM05D000038 ORTHO05D003992 1.3e-08 63.9 134 36.6
Sabra15G0019400 Salix brachista HOM05D000038 ORTHO05D007763 1.7e-08 63.5 120 35.0
Manes.06G154800 Manihot esculenta HOM05D000038 ORTHO05D007763 2.2e-08 63.2 106 40.6
Oeu039596.1 Olea europaea HOM05D000038 ORTHO05D003992 2.2e-08 63.2 108 41.7
ClCG05G008550 Citrullus lanatus HOM05D000038 ORTHO05D007763 2.9e-08 62.8 131 35.9
Haze_18079 Corylus avellana HOM05D000038 ORTHO05D000612 4.9e-08 62.0 140 32.1
Sabra15G0021900 Salix brachista HOM05D000038 ORTHO05D007763 4.9e-08 62.0 120 35.0
ATR0584G238 Amborella trichopoda HOM05D000038 ORTHO05D003992 8.4e-08 61.2 86 38.4
GSVIVG01028787001 Vitis vinifera HOM05D000038 ORTHO05D007763 8.4e-08 61.2 106 40.6
BcaB07g33135 Brassica carinata HOM05D000038 ORTHO05D003992 1.1e-07 60.8 124 37.9
Eucgr.A02679 Eucalyptus grandis HOM05D000038 ORTHO05D007763 1.1e-07 60.8 114 38.6
HPP92_025216 Vanilla planifolia HOM05D000038 ORTHO05D003992 1.1e-07 60.8 92 39.1
PSO063G2177 Papaver somniferum HOM05D000038 ORTHO05D003992 1.9e-07 60.1 138 29.0
TAR629G2722 Trochodendron aralioides HOM05D000038 ORTHO05D007763 2.5e-07 59.7 106 39.6
PSO017G7015 Papaver somniferum HOM05D000038 ORTHO05D003992 4.2e-07 58.9 134 29.1
CANSAT21G2400 Cannabis sativa HOM05D000038 ORTHO05D007763 5.5e-07 58.5 107 34.6
Hund04811 Selenicereus undatus HOM05D000038 ORTHO05D007763 5.5e-07 58.5 143 36.4
CANSAT21G0675 Cannabis sativa HOM05D000038 ORTHO05D007763 9.3e-07 57.8 107 33.6
TAR375G0963 Trochodendron aralioides HOM05D000038 ORTHO05D007763 9.3e-07 57.8 106 40.6
Phvul.007G077300 Phaseolus vulgaris HOM05D000038 ORTHO05D007763 1.2e-06 57.4 105 38.1
Nn2g11266 Nelumbo nucifera HOM05D000038 ORTHO05D000612 3.5e-06 55.8 149 32.2
Nn7g36209 Nelumbo nucifera HOM05D000038 ORTHO05D006286 6.0e-06 55.1 110 36.4
Psat5g153600 Pisum sativum HOM05D000038 ORTHO05D000612 6.0e-06 55.1 148 35.1
BcaNung01207 Brassica carinata HOM05D000038 ORTHO05D007763 7.9e-06 54.7 105 38.1
Gohir.D05G209700 Gossypium hirsutum HOM05D000038 ORTHO05D000612 7.9e-06 54.7 120 35.8
Gorai.009G216200 Gossypium raimondii HOM05D000038 ORTHO05D000612 7.9e-06 54.7 120 35.8
Medtr3g031580 Medicago truncatula HOM05D000038 ORTHO05D000612 7.9e-06 54.7 145 33.1


User provided reference genes

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