Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 1.0e-136 490.0 233 100.0
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 3.9e-83 312.0 216 64.8
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.5e-82 310.1 188 75.0
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 9.5e-82 307.4 216 65.7
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 2.8e-81 305.8 219 65.8
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 4.7e-81 305.1 219 63.9
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 6.2e-81 304.7 219 65.8
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 6.2e-81 304.7 216 67.1
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 1.1e-80 303.9 216 67.6
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 1.4e-80 303.5 216 66.2
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.4e-80 303.5 219 65.3
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 3.1e-80 302.4 187 73.8
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 3.1e-80 302.4 216 65.7
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 5.2e-80 301.6 223 64.6
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 5.2e-80 301.6 216 66.7
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 8.9e-80 300.8 217 65.4
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 8.9e-80 300.8 216 64.8
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 1.2e-79 300.4 188 73.9
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 1.5e-79 300.1 216 66.2
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 2.0e-79 299.7 219 64.8
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 2.0e-79 299.7 220 64.1
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 2.0e-79 299.7 219 64.8
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 4.4e-79 298.5 216 64.4
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 5.8e-79 298.1 229 62.4
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 5.8e-79 298.1 217 64.5
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 7.6e-79 297.7 219 64.8
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 7.6e-79 297.7 216 66.2
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 7.6e-79 297.7 216 65.3
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 9.9e-79 297.4 217 64.5
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 1.3e-78 297.0 216 65.3
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.7e-78 296.6 216 63.9
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.7e-78 296.6 216 64.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 2.2e-78 296.2 216 64.8
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 3.8e-78 295.4 217 64.1
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 4.9e-78 295.0 188 71.8
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 6.4e-78 294.7 216 64.8
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 6.4e-78 294.7 219 64.8
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 8.4e-78 294.3 188 73.9
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 8.4e-78 294.3 224 61.6
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 1.9e-77 293.1 216 66.7
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 3.2e-77 292.4 218 63.8
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 3.2e-77 292.4 218 63.8
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 5.4e-77 291.6 179 74.3
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.6e-76 290.0 231 59.7
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.7e-76 289.3 218 63.3
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.7e-76 289.3 218 63.3
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 6.0e-76 288.1 216 65.3
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 7.8e-76 287.7 199 68.8
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.7e-75 286.6 216 62.0
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 6.6e-75 284.6 188 71.3
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 8.6e-75 284.3 188 70.7
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.1e-74 283.9 189 69.8
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 1.1e-74 283.9 188 70.7
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 1.1e-74 283.9 188 70.7
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 1.1e-74 283.9 188 70.7
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.1e-74 283.9 188 69.7
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 1.5e-74 283.5 219 61.2
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.9e-74 283.1 188 69.7
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 1.9e-74 283.1 188 69.7
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 4.3e-74 282.0 188 70.2
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 4.3e-74 282.0 190 70.0
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 7.3e-74 281.2 188 70.7
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 2.8e-73 279.3 229 59.4
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 2.8e-73 279.3 229 59.0
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 4.7e-73 278.5 188 69.1
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 4.7e-73 278.5 188 69.7
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 4.7e-73 278.5 188 69.1
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 4.7e-73 278.5 188 69.1
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 4.7e-73 278.5 188 69.7
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 4.7e-73 278.5 229 59.4
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 1.4e-72 276.9 220 61.4
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.4e-72 276.9 188 68.1
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 1.8e-72 276.6 188 68.6
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 3.1e-72 275.8 229 59.0
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 5.2e-72 275.0 216 60.2
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.2e-71 273.9 184 69.6
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 1.2e-71 273.9 235 60.0
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 1.5e-71 273.5 220 60.0
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 1.5e-71 273.5 200 66.5
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 3.4e-71 272.3 219 59.4
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 1.3e-70 270.4 219 59.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 4.9e-70 268.5 210 62.4
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 8.4e-70 267.7 221 59.3
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 1.1e-69 267.3 201 62.7
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.9e-69 266.5 219 59.4
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.1e-68 263.1 256 52.3
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.0e-67 260.8 231 57.1
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.3e-67 259.6 256 52.0
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 6.6e-67 258.1 219 58.0
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.9e-66 256.5 216 57.9
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.1e-65 253.1 328 42.7
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 4.8e-65 251.9 156 76.3
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 6.2e-65 251.5 216 57.4
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 2.4e-64 249.6 290 47.2
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.0e-63 246.5 321 43.0
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 4.9e-62 241.9 189 61.9
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 3.9e-59 232.3 219 49.8
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 1.1e-56 224.2 216 52.3
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 2.4e-56 223.0 213 51.6
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 3.1e-56 222.6 224 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 7.6e-55 218.0 194 55.2
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 2.9e-54 216.1 171 59.6
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.1e-53 214.2 224 48.7
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.9e-53 213.4 224 48.7
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 7.1e-53 211.5 223 47.5
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 3.9e-51 205.7 189 54.5
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 8.7e-51 204.5 199 51.8
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 1.2e-47 194.1 186 48.9
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 2.5e-45 186.4 213 48.4
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 2.1e-44 183.3 212 45.8
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.7e-42 174.5 115 73.0
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 9.7e-42 174.5 115 73.0
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 3.1e-40 169.5 232 39.7
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 6.9e-40 168.3 121 65.3
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.6e-36 157.1 193 43.0
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.8e-33 146.4 94 69.1
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 6.1e-28 128.6 98 62.2
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 6.1e-28 128.6 95 64.2
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 1.0e-27 127.9 94 63.8
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 3.0e-27 126.3 95 62.1
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 1.7e-25 120.6 95 61.1
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 6.9e-24 115.2 95 58.9
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.2e-23 114.4 74 66.2
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.9e-21 107.1 76 67.1
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 4.2e-21 105.9 95 57.9
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 2.1e-20 103.6 112 48.2
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 3.6e-20 102.8 65 73.8
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 3.6e-20 102.8 77 55.8
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 2.6e-18 96.7 46 80.4
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 4.8e-17 92.4 101 46.5
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.3e-14 84.3 45 73.3
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 8.5e-14 81.6 69 52.2
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 5.5e-13 79.0 34 91.2
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 8.8e-11 71.6 35 77.1
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 2.8e-09 66.6 65 53.8
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 7.0e-08 62.0 56 50.0
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 7.7e-07 58.5 33 60.6
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 7.7e-07 58.5 33 60.6


User provided reference genes

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