Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 2.3e-254 881.7 438 100.0
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 2.3e-177 625.9 432 70.6
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 1.9e-176 622.9 450 68.4
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 4.3e-176 621.7 451 68.5
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 5.6e-176 621.3 448 68.3
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 3.6e-175 618.6 449 69.5
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 3.6e-175 618.6 448 69.0
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 6.2e-175 617.8 446 69.3
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.1e-174 617.1 448 69.2
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 1.1e-174 617.1 450 67.6
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.4e-174 616.7 424 69.6
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 6.9e-174 614.4 430 69.8
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 9.0e-174 614.0 448 68.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 4.4e-173 611.7 420 70.5
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 9.9e-173 610.5 432 69.0
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.7e-172 609.8 424 69.8
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 4.9e-172 608.2 448 66.3
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 2.7e-170 602.4 447 64.7
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.7e-170 602.4 450 66.9
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 6.0e-170 601.3 425 67.8
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 1.3e-169 600.1 448 67.2
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 5.1e-169 598.2 432 68.3
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.1e-168 597.0 406 73.2
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.1e-168 597.0 425 67.5
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 9.6e-168 594.0 447 64.0
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.6e-167 593.2 449 63.9
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 1.6e-167 593.2 449 64.1
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 2.1e-167 592.8 448 66.1
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 1.1e-166 590.5 429 68.1
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 1.1e-166 590.5 431 65.2
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 1.4e-166 590.1 451 65.9
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.4e-166 590.1 449 64.1
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.4e-166 590.1 450 64.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.1e-166 589.0 451 64.5
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 3.1e-166 589.0 424 66.0
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 4.0e-166 588.6 447 63.3
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.9e-166 587.8 444 65.5
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.9e-166 587.8 444 65.5
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.6e-165 585.9 433 66.3
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 3.4e-165 585.5 427 66.7
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.4e-165 585.5 451 64.3
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 7.6e-165 584.3 447 64.9
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.2e-164 582.8 435 66.2
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 2.9e-164 582.4 427 67.9
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.8e-164 582.0 426 66.4
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 8.4e-164 580.9 431 66.6
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 1.1e-163 580.5 427 67.9
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.4e-163 580.1 419 66.3
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 2.4e-163 579.3 411 68.9
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 2.4e-163 579.3 450 64.7
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 5.4e-163 578.2 429 66.0
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 1.6e-162 576.6 433 64.9
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 2.7e-162 575.9 434 65.2
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 3.5e-162 575.5 424 66.5
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 6.0e-162 574.7 430 65.3
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 7.9e-162 574.3 432 63.9
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 7.9e-162 574.3 426 66.2
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-161 573.5 424 67.0
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 2.5e-160 569.3 426 65.0
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 3.3e-160 568.9 442 63.6
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 7.4e-160 567.8 430 64.4
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 7.4e-160 567.8 431 63.6
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 7.4e-160 567.8 431 63.6
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 7.4e-160 567.8 442 63.3
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 9.6e-160 567.4 443 63.7
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 6.2e-159 564.7 436 64.4
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 8.1e-159 564.3 452 63.3
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 8.1e-159 564.3 406 69.5
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 5.3e-158 561.6 446 63.2
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 9.0e-158 560.8 442 64.9
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 2.0e-157 559.7 421 67.2
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 5.8e-157 558.1 423 65.5
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 9.9e-157 557.4 412 66.3
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.3e-156 557.0 443 62.8
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 4.9e-156 555.1 429 62.9
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 3.2e-155 552.4 431 63.6
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 1.2e-154 550.4 427 63.0
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 1.6e-154 550.1 421 63.9
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.6e-154 550.1 423 66.4
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.1e-154 549.7 442 63.8
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 2.1e-154 549.7 375 70.9
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.3e-153 547.0 430 65.6
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 3.9e-153 545.4 423 65.5
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 8.7e-153 544.3 366 69.7
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 1.5e-152 543.5 430 65.1
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 1.9e-152 543.1 429 62.5
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 4.3e-152 542.0 430 60.5
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 5.6e-152 541.6 431 64.7
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 5.6e-152 541.6 423 65.2
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 1.3e-151 540.4 423 63.4
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 1.3e-151 540.4 404 68.3
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 3.7e-151 538.9 431 65.0
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.7e-151 538.9 429 62.5
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.1e-150 537.3 426 65.5
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 9.0e-150 534.3 428 65.0
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 2.2e-148 529.6 426 64.8
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 2.9e-148 529.3 427 63.7
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 4.9e-148 528.5 416 66.3
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 1.1e-147 527.3 426 64.3
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 9.3e-147 524.2 425 64.2
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 1.6e-146 523.5 431 60.8
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 1.8e-145 520.0 423 64.3
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 1.8e-145 520.0 423 64.3
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 3.0e-145 519.2 425 64.0
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.7e-145 517.7 424 63.0
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.7e-145 517.7 424 63.0
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.5e-144 516.2 374 65.5
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 2.5e-144 516.2 379 65.4
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 3.3e-144 515.8 422 64.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.3e-144 515.8 446 61.4
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 9.7e-144 514.2 378 65.1
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.1e-142 510.8 446 61.0
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 2.4e-142 509.6 422 62.8
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 4.5e-141 505.4 378 64.6
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 5.9e-141 505.0 342 69.9
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.4e-139 500.4 431 59.6
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.5e-139 499.6 350 67.4
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 4.2e-139 498.8 358 69.3
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 6.1e-138 495.0 350 67.4
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.4e-137 493.8 337 67.4
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 7.4e-136 488.0 438 58.7
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.4e-134 483.8 349 66.5
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 3.1e-126 456.1 425 57.6
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 7.0e-126 454.9 319 67.4
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 1.8e-121 440.3 329 64.1
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 7.7e-117 424.9 341 64.8
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 5.0e-108 395.6 421 49.6
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 3.2e-107 392.9 373 55.5
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 1.8e-105 387.1 272 66.9
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 1.8e-105 387.1 272 66.9
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.3e-103 380.9 374 52.9
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 4.7e-98 362.5 376 51.1
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.2e-80 304.7 225 66.2
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.7e-68 264.2 318 47.8
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 2.3e-68 263.8 187 67.9
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.5e-67 261.2 243 55.6
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 7.1e-62 242.3 148 73.6
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 8.4e-55 218.8 158 64.6
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 3.2e-54 216.9 257 47.1
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 5.5e-38 162.9 143 53.8
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.3e-36 157.5 107 66.4
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.9e-35 154.5 140 62.1
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 2.2e-31 141.0 110 69.1
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 2.5e-30 137.5 111 66.7
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 3.3e-27 127.1 99 58.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 5.1e-12 76.6 51 64.7
Hund18996 Selenicereus undatus HOM05D000076 ORTHO05D005938 2.6e-08 64.3 325 22.2
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 1.0e-07 62.4 67 47.8
CDE01G0820 Ceratophyllum demersum HOM05D000076 ORTHO05D003143 1.7e-07 61.6 380 21.8
GSVIVG01020912001 Vitis vinifera HOM05D000076 ORTHO05D005938 2.2e-07 61.2 321 23.1
GSVIVG01038360001 Vitis vinifera HOM05D000076 ORTHO05D005938 2.9e-07 60.8 319 23.5
Sc20g0000020 Simmondsia chinensis HOM05D000076 ORTHO05D003143 3.8e-07 60.5 367 23.4
Sabra16G0200300 Salix brachista HOM05D000076 ORTHO05D005938 1.1e-06 58.9 311 22.5
Cc03_g08000 Coffea canephora HOM05D000076 ORTHO05D005938 1.5e-06 58.5 319 22.9
TAR633G0494 Trochodendron aralioides HOM05D001184 ORTHO05D003397 1.9e-06 58.2 320 21.9
HPP92_013120 Vanilla planifolia HOM05D000076 ORTHO05D005938 1.9e-06 58.2 320 21.6
EL10Ac5g12388 Beta vulgaris HOM05D000076 ORTHO05D001150 2.5e-06 57.8 341 24.3
MELO3C006309.2 Cucumis melo HOM05D000076 ORTHO05D005938 3.2e-06 57.4 321 22.7
FvH4_4g13740 Fragaria vesca HOM05D000076 ORTHO05D005938 4.2e-06 57.0 321 22.7
CDE05G0112 Ceratophyllum demersum HOM05D000076 ORTHO05D005938 5.5e-06 56.6 327 23.2
CsaV3_3G010900 Cucumis sativus L. HOM05D000076 ORTHO05D005938 5.5e-06 56.6 321 22.7
MELO3C011089.2 Cucumis melo HOM05D000076 ORTHO05D003143 7.2e-06 56.2 370 22.7
HanXRQChr13g0420941 Helianthus annuus HOM05D000076 ORTHO05D005938 7.2e-06 56.2 321 22.4
Cpa.g.sc21.17 Carica papaya HOM05D000076 ORTHO05D003143 9.4e-06 55.8 382 23.3


User provided reference genes

Program Settings