Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0178 Punica granatum HOM05D018153 ORTHO05D020981 2.2e-87 325.5 152 100.0
PGR083G2219 Punica granatum HOM05D018153 ORTHO05D020981 2.2e-87 325.5 152 100.0
PGR083G1595 Punica granatum HOM05D018153 ORTHO05D020981 9.6e-67 256.9 152 79.6
PGR083G1361 Punica granatum HOM05D018153 ORTHO05D020981 8.8e-44 180.6 154 59.7
PGR083G2677 Punica granatum HOM05D018153 ORTHO05D020981 8.8e-44 180.6 154 59.7
PGR083G2890 Punica granatum HOM05D018153 ORTHO05D020981 1.8e-17 93.2 156 38.5
PGR042G1154 Punica granatum HOM05D018153 ORTHO05D020981 7.8e-16 87.8 122 41.8
Prupe.1G049500 Prunus persica HOM05D000256 ORTHO05D000119 7.3e-14 81.3 115 36.5
MD17G1123000 Malus domestica HOM05D000256 ORTHO05D000119 8.9e-12 74.3 110 38.2
FvH4_4g02030 Fragaria vesca HOM05D000256 ORTHO05D000119 5.7e-11 71.6 157 30.6
MD04G1130600 Malus domestica HOM05D000256 ORTHO05D000119 5.7e-11 71.6 153 30.7
GSVIVG01014872001 Vitis vinifera HOM05D000256 ORTHO05D000119 5.7e-11 71.6 138 33.3
BraA08t34692Z Brassica rapa HOM05D005246 ORTHO05D000119 7.5e-11 71.2 158 28.5
Eucgr.H01885 Eucalyptus grandis HOM05D000256 ORTHO05D000119 7.5e-11 71.2 115 37.4
A08p27520 Brassica napus HOM05D005246 ORTHO05D000119 9.8e-11 70.9 158 27.8
Medtr1g028420 Medicago truncatula HOM05D000256 ORTHO05D000119 1.3e-10 70.5 134 34.3
BcaC07g39273 Brassica carinata HOM05D005246 ORTHO05D000119 2.9e-10 69.3 158 27.8
C08p22810 Brassica napus HOM05D005246 ORTHO05D000119 2.9e-10 69.3 158 27.8
FvH4_4g05610 Fragaria vesca HOM05D000256 ORTHO05D000119 3.7e-10 68.9 112 33.9
FAN12G4246 Fragaria x ananassa HOM05D000256 ORTHO05D000119 3.7e-10 68.9 112 33.9
BcaB01g05431 Brassica carinata HOM05D000256 ORTHO05D000119 4.9e-10 68.6 99 36.4
Prupe.5G054200 Prunus persica HOM05D000256 ORTHO05D000119 6.4e-10 68.2 134 32.1
Eucgr.H01296 Eucalyptus grandis HOM05D000256 ORTHO05D000119 8.3e-10 67.8 114 36.8
PGR042G0022 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G0549 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G0996 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G1053 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G1377 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G1542 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G1949 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G2280 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G2642 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G3183 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G3343 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
PGR042G3721 Punica granatum HOM05D000256 ORTHO05D000119 8.3e-10 67.8 142 30.3
Prupe.1G055600 Prunus persica HOM05D000256 ORTHO05D000119 1.1e-09 67.4 156 31.4
CANSAT78G0693 Cannabis sativa HOM05D000256 ORTHO05D000119 1.4e-09 67.0 120 30.8
PGR042G2906 Punica granatum HOM05D000256 ORTHO05D000119 1.8e-09 66.6 142 31.7
A07p13110 Brassica napus HOM05D005246 ORTHO05D000119 2.4e-09 66.2 157 29.3
MD14G1004300 Malus domestica HOM05D000256 ORTHO05D000119 3.2e-09 65.9 152 29.6
C07p19590 Brassica napus HOM05D005246 ORTHO05D000119 4.1e-09 65.5 157 29.3
BolC7t42476H Brassica oleracea HOM05D005246 ORTHO05D000119 4.1e-09 65.5 157 29.3
Carub.0007s2926 Capsella rubella HOM05D005246 ORTHO05D000119 4.1e-09 65.5 115 32.2
Prupe.1G057800 Prunus persica HOM05D000256 ORTHO05D000119 4.1e-09 65.5 98 41.8
BcaB03g12007 Brassica carinata HOM05D005246 ORTHO05D000119 7.0e-09 64.7 158 27.8
Carub.0001s2419 Capsella rubella HOM05D005246 ORTHO05D000119 7.0e-09 64.7 116 31.9
MD09G1134100 Malus domestica HOM05D000256 ORTHO05D000119 7.0e-09 64.7 111 33.3
GSVIVG01014884001 Vitis vinifera HOM05D000256 ORTHO05D000119 7.0e-09 64.7 137 34.3
BcaC04g22341 Brassica carinata HOM05D005246 ORTHO05D000119 9.2e-09 64.3 115 31.3
BcaC07g39272 Brassica carinata HOM05D005246 ORTHO05D000119 9.2e-09 64.3 158 26.6
C09p20410 Brassica napus HOM05D005246 ORTHO05D000119 9.2e-09 64.3 115 31.3
BolC9t54944H Brassica oleracea HOM05D005246 ORTHO05D000119 9.2e-09 64.3 115 31.3
FvH4_4g02050 Fragaria vesca HOM05D000256 ORTHO05D000119 9.2e-09 64.3 114 32.5
RcHm_v2.0_Chr4g0396771 Rosa chinensis HOM05D000256 ORTHO05D000119 9.2e-09 64.3 112 33.9
RcHm_v2.0_Chr5g0046141 Rosa chinensis HOM05D000256 ORTHO05D000119 1.2e-08 63.9 112 33.9
BcaB07g31553 Brassica carinata HOM05D000256 ORTHO05D000119 1.6e-08 63.5 113 32.7
Prupe.1G058600 Prunus persica HOM05D000256 ORTHO05D000119 1.6e-08 63.5 131 32.1
Prupe.1G059000 Prunus persica HOM05D000256 ORTHO05D000119 1.6e-08 63.5 131 32.1
Prupe.1G062800 Prunus persica HOM05D000256 ORTHO05D000119 1.6e-08 63.5 104 32.7
Aa31LG2G14660 Aethionema arabicum HOM05D000256 ORTHO05D000119 2.0e-08 63.2 84 39.3
Aa31LG2G14700 Aethionema arabicum HOM05D000256 ORTHO05D000119 2.0e-08 63.2 120 33.3
AT1G26799 Arabidopsis thaliana HOM05D005246 ORTHO05D000119 2.0e-08 63.2 114 29.8
Thhalv10009958m.g Eutrema salsugineum HOM05D005246 ORTHO05D000119 2.0e-08 63.2 108 30.6
Lalb_Chr06g0176321 Lupinus albus HOM05D000256 ORTHO05D000119 2.0e-08 63.2 115 33.9
FvH4_2g30460 Fragaria vesca HOM05D000256 ORTHO05D000119 2.7e-08 62.8 104 31.7
MD09G1134200 Malus domestica HOM05D000256 ORTHO05D000119 2.7e-08 62.8 111 37.8
FAN22G0130 Fragaria x ananassa HOM05D000256 ORTHO05D000119 3.5e-08 62.4 157 29.9
Medtr1g060940 Medicago truncatula HOM05D000256 ORTHO05D000119 3.5e-08 62.4 109 34.9
GSVIVG01014873001 Vitis vinifera HOM05D000256 ORTHO05D000119 3.5e-08 62.4 138 33.3
Carub.0001s3525 Capsella rubella HOM05D005246 ORTHO05D000119 5.9e-08 61.6 116 31.9
Carub.0005s1059 Capsella rubella HOM05D005246 ORTHO05D000119 5.9e-08 61.6 115 32.2
FvH4_3g25180 Fragaria vesca HOM05D000256 ORTHO05D000119 5.9e-08 61.6 113 33.6
Thecc.04G213300 Theobroma cacao HOM05D000256 ORTHO05D000119 5.9e-08 61.6 116 31.9
BraA07t29082Z Brassica rapa HOM05D005246 ORTHO05D000119 7.8e-08 61.2 100 36.0
MD13G1228100 Malus domestica HOM05D000256 ORTHO05D000119 7.8e-08 61.2 97 37.1
AT5G12060 Arabidopsis thaliana HOM05D000256 ORTHO05D000119 1.0e-07 60.8 98 33.7
arahy.Tifrunner.gnm1.ann1.12347Q Arachis hypogaea HOM05D000256 ORTHO05D000119 1.0e-07 60.8 96 36.5
Lalb_Chr18g0045921 Lupinus albus HOM05D000256 ORTHO05D000119 1.0e-07 60.8 106 30.2
Prupe.1G058900 Prunus persica HOM05D000256 ORTHO05D000119 1.0e-07 60.8 98 34.7
Aa31LG2G14670 Aethionema arabicum HOM05D000256 ORTHO05D000119 1.3e-07 60.5 99 37.4
Aa31LG2G15360 Aethionema arabicum HOM05D000256 ORTHO05D000119 1.3e-07 60.5 102 36.3
AL3G30060 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 1.3e-07 60.5 119 33.6
Eucgr.H03232 Eucalyptus grandis HOM05D000256 ORTHO05D000119 1.3e-07 60.5 95 34.7
Lalb_Chr18g0044301 Lupinus albus HOM05D000256 ORTHO05D000119 1.3e-07 60.5 106 33.0
Lalb_Chr22g0360131 Lupinus albus HOM05D000256 ORTHO05D000119 1.3e-07 60.5 109 30.3
Prupe.1G055500 Prunus persica HOM05D000256 ORTHO05D000119 1.3e-07 60.5 98 36.7
RcHm_v2.0_Chr6g0244081 Rosa chinensis HOM05D000256 ORTHO05D000119 1.3e-07 60.5 111 31.5
Migut.F00959 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.7e-07 60.1 136 26.5
Medtr1g060930 Medicago truncatula HOM05D000256 ORTHO05D000119 1.7e-07 60.1 109 33.9
EL10Ac2g04506 Beta vulgaris HOM05D000256 ORTHO05D000119 2.3e-07 59.7 104 38.5
BNapus_Darmor_BZH_scaffold_38p02240 Brassica napus HOM05D000256 ORTHO05D000119 2.3e-07 59.7 121 33.1
GSVIVG01014874001 Vitis vinifera HOM05D000256 ORTHO05D000119 2.3e-07 59.7 138 31.9
Aa31LG2G9260 Aethionema arabicum HOM05D005246 ORTHO05D000119 3.0e-07 59.3 135 27.4
Carub.0001s3526 Capsella rubella HOM05D005246 ORTHO05D000119 3.0e-07 59.3 116 31.0
MD07G1270000 Malus domestica HOM05D000256 ORTHO05D000119 3.0e-07 59.3 99 34.3
Sopen09g035010 Solanum pennellii HOM05D000256 ORTHO05D000119 3.0e-07 59.3 105 31.4
A02p05710 Brassica napus HOM05D000256 ORTHO05D000119 3.9e-07 58.9 121 32.2
BraA02t05523Z Brassica rapa HOM05D000256 ORTHO05D000119 3.9e-07 58.9 121 32.2
Ciclev10017715m.g Citrus clementina HOM05D000256 ORTHO05D000119 3.9e-07 58.9 97 35.1
MD13G1228300 Malus domestica HOM05D000256 ORTHO05D000119 3.9e-07 58.9 112 34.8
Phvul.011G123100 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 3.9e-07 58.9 110 30.0
RcHm_v2.0_Chr6g0312461 Rosa chinensis HOM05D000256 ORTHO05D000119 3.9e-07 58.9 118 29.7
RcHm_v2.0_Chr6g0312471 Rosa chinensis HOM05D000256 ORTHO05D000119 3.9e-07 58.9 118 29.7
AL6G22850 Arabidopsis lyrata HOM05D000256 ORTHO05D000119 5.0e-07 58.5 98 37.8
C03p06280 Brassica napus HOM05D000256 ORTHO05D000119 5.0e-07 58.5 101 33.7
BolC3t13135H Brassica oleracea HOM05D000256 ORTHO05D000119 5.0e-07 58.5 101 33.7
BraA07t29080Z Brassica rapa HOM05D005246 ORTHO05D000119 5.0e-07 58.5 89 37.1
Carub.0001s2421 Capsella rubella HOM05D005246 ORTHO05D000119 5.0e-07 58.5 114 31.6
CARHR025140 Cardamine hirsuta HOM05D005246 ORTHO05D000119 5.0e-07 58.5 152 26.3
Prupe.1G057700 Prunus persica HOM05D000256 ORTHO05D000119 5.0e-07 58.5 108 34.3
Prupe.1G058100 Prunus persica HOM05D000256 ORTHO05D000119 5.0e-07 58.5 110 34.5
MD05G1264800 Malus domestica HOM05D000256 ORTHO05D000119 6.6e-07 58.2 138 31.2
Eucgr.H02834 Eucalyptus grandis HOM05D000256 ORTHO05D000119 8.6e-07 57.8 149 30.9
Ciclev10006408m.g Citrus clementina HOM05D000256 ORTHO05D000119 1.1e-06 57.4 99 33.3
MD13G1231700 Malus domestica HOM05D000256 ORTHO05D000119 1.1e-06 57.4 107 32.7
MD17G1052600 Malus domestica HOM05D000256 ORTHO05D000119 1.1e-06 57.4 68 48.5
Prupe.1G059100 Prunus persica HOM05D000256 ORTHO05D000119 1.1e-06 57.4 125 31.2
Prupe.1G062600 Prunus persica HOM05D000256 ORTHO05D000119 1.1e-06 57.4 106 34.9
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 1.1e-06 57.4 97 37.1
Aa31LG2G15350 Aethionema arabicum HOM05D000256 ORTHO05D000119 1.5e-06 57.0 104 32.7
Aa31LG2G15930 Aethionema arabicum HOM05D000256 ORTHO05D000119 1.5e-06 57.0 104 32.7
BcaB03g14088 Brassica carinata HOM05D005246 ORTHO05D000119 1.5e-06 57.0 101 34.7
Thhalv10022192m.g Eutrema salsugineum HOM05D000256 ORTHO05D000119 1.5e-06 57.0 102 33.3
Oeu055432.1 Olea europaea HOM05D000256 ORTHO05D000119 1.5e-06 57.0 115 28.7
Atru.chr4.1735 Acer truncatum HOM05D000256 ORTHO05D000119 1.9e-06 56.6 96 33.3
BcaC03g13696 Brassica carinata HOM05D000256 ORTHO05D000119 1.9e-06 56.6 103 34.0
BraA03t09878Z Brassica rapa HOM05D000256 ORTHO05D000119 1.9e-06 56.6 112 33.0
Eucgr.B02182 Eucalyptus grandis HOM05D000256 ORTHO05D000119 1.9e-06 56.6 99 32.3
Lalb_Chr15g0076131 Lupinus albus HOM05D000256 ORTHO05D000119 1.9e-06 56.6 123 33.3
Medtr6g016935 Medicago truncatula HOM05D000256 ORTHO05D000119 1.9e-06 56.6 100 34.0
Prupe.1G057300 Prunus persica HOM05D000256 ORTHO05D000119 1.9e-06 56.6 98 33.7
PGR042G3114 Punica granatum HOM05D000256 ORTHO05D005461 1.9e-06 56.6 121 29.8
EL10Ac2g04507 Beta vulgaris HOM05D000256 ORTHO05D000119 2.5e-06 56.2 111 31.5
A03p03930 Brassica napus HOM05D005246 ORTHO05D000119 2.5e-06 56.2 143 32.2
Phvul.008G177700 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 2.5e-06 56.2 95 32.6
Aa31LG2G14620 Aethionema arabicum HOM05D000256 ORTHO05D000119 3.3e-06 55.8 80 38.8
Aa31LG2G15310 Aethionema arabicum HOM05D000256 ORTHO05D000119 3.3e-06 55.8 96 34.4
Aa31sc739G70 Aethionema arabicum HOM05D000256 ORTHO05D000119 3.3e-06 55.8 80 38.8
FAN04G0960 Fragaria x ananassa HOM05D000256 ORTHO05D000119 3.3e-06 55.8 100 35.0
Gorai.009G340000 Gossypium raimondii HOM05D000256 ORTHO05D000119 3.3e-06 55.8 105 36.2
MD05G1010100 Malus domestica HOM05D000256 ORTHO05D000119 4.3e-06 55.5 126 30.2
Sed0024573 Sechium edule HOM05D000256 ORTHO05D000119 4.3e-06 55.5 123 30.1
unitig_899.g15048 Utricularia gibba HOM05D000256 ORTHO05D000119 4.3e-06 55.5 80 35.0
Eucgr.L01080 Eucalyptus grandis HOM05D000256 ORTHO05D000119 5.6e-06 55.1 94 33.0
Prupe.1G062700 Prunus persica HOM05D000256 ORTHO05D000119 5.6e-06 55.1 89 37.1
AT3G17080 Arabidopsis thaliana HOM05D000256 ORTHO05D000119 7.3e-06 54.7 119 31.9
Nitab4.5_0000401g0140 Nicotiana tabacum HOM05D000256 ORTHO05D000119 7.3e-06 54.7 119 28.6


User provided reference genes

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