Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 1.0e-191 673.3 367 100.0
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 6.5e-117 424.9 381 68.5
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 2.5e-116 422.9 378 67.5
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 6.7e-114 414.8 369 67.8
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 7.4e-113 411.4 381 64.8
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 9.6e-113 411.0 371 64.7
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 2.8e-112 409.5 374 66.3
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 6.9e-111 404.8 377 63.4
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.9e-109 399.4 369 64.5
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 6.5e-109 398.3 380 64.5
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 8.5e-109 397.9 376 64.4
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.5e-108 395.2 402 61.4
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.5e-108 395.2 402 61.4
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 5.5e-108 395.2 402 61.4
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.5e-105 386.3 376 63.0
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 3.3e-105 386.0 378 62.4
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 7.4e-105 384.8 381 61.2
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 4.8e-104 382.1 387 61.8
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 8.2e-104 381.3 388 60.3
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.4e-103 380.6 364 62.6
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 5.3e-103 378.6 404 59.4
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.5e-102 377.1 365 63.6
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 2.0e-102 376.7 370 63.2
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.5e-102 375.6 412 58.7
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 5.9e-102 375.2 363 65.0
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.2e-101 373.2 390 59.5
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.9e-101 372.9 445 55.3
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 6.5e-101 371.7 390 59.2
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 1.1e-100 370.9 407 58.0
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.1e-100 370.9 389 60.2
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.5e-100 369.8 401 59.4
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.3e-98 363.2 296 70.3
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 8.8e-98 361.3 389 62.0
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 1.1e-97 360.9 400 58.0
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 3.3e-97 359.4 390 57.7
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 3.3e-97 359.4 390 57.7
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 3.3e-97 359.4 384 57.6
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 1.3e-96 357.5 387 57.6
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 6.3e-96 355.1 374 60.4
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 1.1e-95 354.4 401 57.9
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.8e-95 353.6 386 59.3
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 6.9e-95 351.7 407 57.0
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.2e-94 350.9 387 58.1
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 1.0e-93 347.8 383 56.7
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.7e-93 347.1 407 56.5
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 1.7e-93 347.1 385 59.5
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 2.9e-93 346.3 371 58.0
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 3.8e-93 345.9 425 55.3
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 1.9e-92 343.6 334 63.8
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 5.5e-92 342.0 383 58.5
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 9.4e-92 341.3 364 58.0
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 2.1e-91 340.1 390 55.1
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 2.1e-91 340.1 350 61.1
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 6.1e-91 338.6 429 54.3
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 1.4e-90 337.4 371 57.4
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 2.3e-90 336.7 412 53.9
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.0e-90 336.3 380 56.3
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 6.7e-90 335.1 382 58.4
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 7.4e-89 331.6 379 56.5
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 1.7e-88 330.5 388 54.6
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 2.8e-88 329.7 391 54.5
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 2.8e-88 329.7 382 57.9
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 8.2e-88 328.2 428 53.7
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.4e-87 326.6 383 55.4
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 5.3e-87 325.5 414 55.3
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 5.9e-86 322.0 437 51.7
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 1.7e-85 320.5 392 55.4
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 1.7e-85 320.5 298 62.4
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 2.2e-85 320.1 298 62.4
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 1.5e-84 317.4 419 53.5
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 2.5e-84 316.6 299 62.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 4.2e-84 315.8 298 62.1
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 4.7e-83 312.4 376 54.0
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 1.0e-82 311.2 452 50.4
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 5.2e-82 308.9 299 64.9
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 1.7e-80 303.9 343 60.1
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 4.8e-80 302.4 366 54.6
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 1.4e-79 300.8 397 52.9
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 9.1e-79 298.1 384 53.1
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 1.2e-78 297.7 460 46.7
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 1.2e-78 297.7 347 58.2
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 1.6e-78 297.4 456 46.5
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 1.6e-78 297.4 378 55.0
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 3.5e-78 296.2 324 58.3
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 3.5e-78 296.2 372 54.8
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 5.9e-78 295.4 467 46.5
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 1.7e-77 293.9 472 45.3
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 1.7e-77 293.9 471 45.4
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 2.2e-77 293.5 465 46.2
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 2.2e-77 293.5 465 46.2
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 2.2e-77 293.5 450 47.8
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.9e-77 293.1 490 45.3
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.5e-76 290.8 324 55.6
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 1.5e-76 290.8 373 52.5
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 7.2e-76 288.5 361 53.5
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 9.4e-76 288.1 489 45.0
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 9.4e-76 288.1 277 61.7
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 1.6e-75 287.3 395 50.1
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 2.3e-74 283.5 378 50.0
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 3.0e-74 283.1 355 53.0
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.5e-73 280.8 396 52.0
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 9.8e-73 278.1 478 45.2
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.4e-71 274.2 355 53.0
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 2.4e-71 273.5 401 50.9
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 3.1e-71 273.1 496 44.6
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 5.4e-71 272.3 425 45.6
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 3.5e-70 269.6 387 48.3
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 3.8e-69 266.2 481 43.2
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 8.0e-67 258.5 321 53.0
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.7e-64 250.8 406 46.8
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 3.7e-64 249.6 292 55.1
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 3.1e-63 246.5 345 50.4
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.3e-61 240.4 343 47.8
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 1.9e-60 237.3 284 52.8
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 1.6e-59 234.2 445 44.7
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 7.5e-57 225.3 351 45.9
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 7.0e-55 218.8 292 52.1
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 6.0e-54 215.7 332 46.7
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.0e-53 214.9 262 53.8
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 4.7e-51 206.1 397 41.6
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.3e-50 203.8 331 47.7
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 2.9e-48 196.8 382 42.9
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 4.9e-48 196.1 448 38.6
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 6.4e-48 195.7 350 43.4
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 7.3e-44 182.2 378 44.7
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 4.4e-41 172.9 129 73.6
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 3.0e-37 160.2 193 54.4
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 9.5e-36 155.2 337 42.1
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 5.4e-31 139.4 375 38.1
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 3.8e-24 116.7 157 51.0
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 2.4e-23 114.0 69 87.0
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.3e-21 107.5 68 80.9
Zm00001eb269750 Zea mays HOM05D004847 ORTHO05D005856 5.6e-20 102.8 228 39.9
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.8e-18 97.8 355 32.1
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.4e-17 93.6 321 28.0
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 3.8e-16 90.1 103 50.5
Lsat_1_v5_gn_8_18301 Lactuca sativa HOM05D004847 ORTHO05D005856 1.1e-15 88.6 98 53.1
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 5.4e-15 86.3 71 63.4
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.6e-14 84.7 74 68.9
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 2.7e-14 84.0 67 65.7
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 4.6e-14 83.2 67 65.7
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 3.0e-13 80.5 201 37.3
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.5e-12 78.2 67 56.7
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 1.3e-11 75.1 62 64.5
Zm00001eb092520 Zea mays HOM05D004847 ORTHO05D005856 1.3e-11 75.1 201 39.3
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 6.2e-11 72.8 101 44.6
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 3.4e-09 67.0 58 60.3
Gohir.A01G045000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 6.4e-08 62.8 52 67.3
Gohir.A10G185000 Gossypium hirsutum HOM05D000639 ORTHO05D020118 6.4e-08 62.8 52 67.3
Gohir.D10G149400 Gossypium hirsutum HOM05D000639 ORTHO05D020118 6.4e-08 62.8 52 67.3
Gohir.D07G076600 Gossypium hirsutum HOM05D000639 ORTHO05D020118 1.4e-07 61.6 52 65.4
Actinidia19788 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.9e-07 61.2 36 83.3
Gohir.D04G107600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.7e-06 57.4 79 50.6
Gohir.D09G147300 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.7e-06 57.4 79 50.6
Gohir.D10G096100 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.7e-06 57.4 79 50.6
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 3.5e-06 57.0 247 32.8


User provided reference genes

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