Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0131 Punica granatum HOM05D004927 ORTHO05D005798 1.8e-82 309.3 167 100.0
Manes.14G051700 Manihot esculenta HOM05D004927 ORTHO05D005798 3.0e-53 212.2 166 70.5
CiPaw.12G042500 Carya illinoinensis HOM05D004927 ORTHO05D005798 9.0e-50 200.7 171 65.5
Ciclev10022591m.g Citrus clementina HOM05D004927 ORTHO05D005798 9.0e-50 200.7 164 67.7
Actinidia25582 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.2e-49 200.3 166 66.9
Potri.012G096900 Populus trichocarpa HOM05D004927 ORTHO05D005798 4.5e-49 198.4 164 67.1
CiPaw.11G008400 Carya illinoinensis HOM05D004927 ORTHO05D005798 7.6e-49 197.6 171 64.9
TWI23G0043 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 7.6e-49 197.6 166 62.0
Potri.015G094600 Populus trichocarpa HOM05D004927 ORTHO05D005798 1.3e-48 196.8 167 65.9
Dinv11165 Davidia involucrata HOM05D004927 ORTHO05D005798 6.5e-48 194.5 168 66.1
Glyma.05G047500 Glycine max HOM05D004927 ORTHO05D005798 1.4e-47 193.4 156 68.6
MD06G1142800 Malus domestica HOM05D004927 ORTHO05D005798 2.5e-47 192.6 171 65.5
GSVIVG01008533001 Vitis vinifera HOM05D004927 ORTHO05D005798 4.2e-47 191.8 167 65.3
Dinv23136 Davidia involucrata HOM05D004927 ORTHO05D005798 9.3e-47 190.7 168 64.9
CSS0046411 Camellia sinensis var. sinensis HOM05D004927 ORTHO05D005798 2.1e-46 189.5 167 62.3
Phvul.003G210400 Phaseolus vulgaris HOM05D004927 ORTHO05D005798 2.7e-46 189.1 159 65.4
Prupe.5G152100 Prunus persica HOM05D004927 ORTHO05D005798 2.7e-46 189.1 169 66.3
Aa31LG1G18580 Aethionema arabicum HOM05D004927 ORTHO05D005798 7.9e-46 187.6 167 62.3
Duzib068G0304 Durio zibethinus HOM05D004927 ORTHO05D005798 7.9e-46 187.6 170 62.9
AT5G63460 Arabidopsis thaliana HOM05D004927 ORTHO05D005798 1.0e-45 187.2 163 62.0
THA.LOC104798947 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 1.0e-45 187.2 170 63.5
Actinidia08867 Actinidia chinensis HOM05D004927 ORTHO05D005798 1.3e-45 186.8 171 63.2
Manes.06G118800 Manihot esculenta HOM05D004927 ORTHO05D005798 1.8e-45 186.4 156 66.0
CARHR277310 Cardamine hirsuta HOM05D004927 ORTHO05D005798 2.3e-45 186.0 163 65.0
AL8G40520 Arabidopsis lyrata HOM05D004927 ORTHO05D005798 3.9e-45 185.3 163 62.0
Actinidia33102 Actinidia chinensis HOM05D004927 ORTHO05D005798 6.7e-45 184.5 166 63.3
vmacro19200 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 6.7e-45 184.5 158 65.8
CANSAT80G0771 Cannabis sativa HOM05D004927 ORTHO05D005798 1.1e-44 183.7 170 64.7
Thecc.03G128000 Theobroma cacao HOM05D004927 ORTHO05D005798 1.5e-44 183.3 165 62.4
Thhalv10005047m.g Eutrema salsugineum HOM05D004927 ORTHO05D005798 4.3e-44 181.8 163 61.3
Sp2g26540 Schrenkiella parvula HOM05D004927 ORTHO05D005798 7.4e-44 181.0 163 61.3
MSTRG.11279 Avicennia marina HOM05D004927 ORTHO05D005798 9.7e-44 180.6 171 61.4
BcaC04g23330 Brassica carinata HOM05D004927 ORTHO05D005798 3.7e-43 178.7 163 60.7
Duzib205G1407 Durio zibethinus HOM05D004927 ORTHO05D005798 3.7e-43 178.7 163 62.6
Glyma.17G129300 Glycine max HOM05D004927 ORTHO05D005798 4.8e-43 178.3 146 67.8
Solyc03g111270.2 Solanum lycopersicum HOM05D004927 ORTHO05D005798 6.3e-43 177.9 165 62.4
Sopen03g030400 Solanum pennellii HOM05D004927 ORTHO05D005798 6.3e-43 177.9 165 62.4
TWI39G0602 Tripterygium wilfordii HOM05D004927 ORTHO05D005798 8.2e-43 177.6 162 60.5
Cc04_g10030 Coffea canephora HOM05D004927 ORTHO05D005798 1.1e-42 177.2 163 61.3
SGA_v2.0_scaffold215G42324 Striga asiatica HOM05D004927 ORTHO05D005798 1.1e-42 177.2 159 60.4
Atru.chr9.1061 Acer truncatum HOM05D004927 ORTHO05D005798 1.4e-42 176.8 162 61.7
Carub.0008s2416 Capsella rubella HOM05D004927 ORTHO05D005798 1.8e-42 176.4 163 59.5
THA.LOC104818187 Tarenaya hassleriana HOM05D004927 ORTHO05D005798 4.1e-42 175.3 170 60.6
Gohir.D11G039650 Gossypium hirsutum HOM05D004927 ORTHO05D005798 5.3e-42 174.9 170 61.8
Gohir.A11G036100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.2e-41 173.7 170 62.4
Sabra12G0070900 Salix brachista HOM05D004927 ORTHO05D005798 1.5e-41 173.3 167 60.5
MD14G1158000 Malus domestica HOM05D004927 ORTHO05D005798 5.9e-41 171.4 171 60.2
Rhsim08G0189300 Rhododendron simsii HOM05D004927 ORTHO05D005798 5.9e-41 171.4 177 57.1
Nitab4.5_0003005g0020 Nicotiana tabacum HOM05D004927 ORTHO05D005798 7.6e-41 171.0 171 59.1
Gorai.007G042600 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.7e-40 169.9 174 60.3
HanXRQChr09g0273101 Helianthus annuus HOM05D004927 ORTHO05D005798 1.7e-40 169.9 163 60.1
VMungo1215G0874 Vigna mungo HOM05D004927 ORTHO05D005798 2.2e-40 169.5 138 66.7
Oeu056013.1 Olea europaea HOM05D004927 ORTHO05D005798 8.5e-40 167.5 169 56.2
MSTRG.4598 Avicennia marina HOM05D004927 ORTHO05D005798 1.4e-39 166.8 167 58.1
Nn3g16487 Nelumbo nucifera HOM05D004927 ORTHO05D005798 1.4e-39 166.8 168 59.5
A09p08260 Brassica napus HOM05D004927 ORTHO05D005798 1.9e-39 166.4 154 59.7
C09p09350 Brassica napus HOM05D000789 ORTHO05D005798 4.2e-39 165.2 154 59.7
BolC9t53847H Brassica oleracea HOM05D000789 ORTHO05D005798 4.2e-39 165.2 154 59.7
Lsat_1_v5_gn_1_29040 Lactuca sativa HOM05D004927 ORTHO05D005798 5.5e-39 164.9 165 59.4
MBI07_g34620_MAGBIO Magnolia biondii HOM05D004927 ORTHO05D005798 7.2e-39 164.5 160 59.4
Sabra15G0116000 Salix brachista HOM05D004927 ORTHO05D005798 7.2e-39 164.5 183 54.6
ECA247G2750 Erigeron canadensis HOM05D004927 ORTHO05D005798 1.2e-38 163.7 156 61.5
Oeu018539.1 Olea europaea HOM05D004927 ORTHO05D005798 1.6e-38 163.3 161 62.7
Lj4g0014142 Lotus japonicus HOM05D004927 ORTHO05D005798 2.1e-38 162.9 155 61.3
CsaV3_1G000620 Cucumis sativus L. HOM05D004927 ORTHO05D005798 4.6e-38 161.8 154 61.0
MELO3C026211.2 Cucumis melo HOM05D004927 ORTHO05D005798 1.8e-37 159.8 154 60.4
Sc04g0000700 Simmondsia chinensis HOM05D004927 ORTHO05D005798 1.8e-37 159.8 166 59.0
BcaB04g19918 Brassica carinata HOM05D004927 ORTHO05D005798 2.3e-37 159.5 154 57.1
HanXRQChr07g0193231 Helianthus annuus HOM05D004927 ORTHO05D005798 5.1e-37 158.3 160 60.0
Haze_07225 Corylus avellana HOM05D004927 ORTHO05D005798 1.5e-36 156.8 123 71.5
BraA09t36477Z Brassica rapa HOM05D004927 ORTHO05D005798 2.5e-36 156.0 167 55.1
Gorai.006G271700 Gossypium raimondii HOM05D004927 ORTHO05D005798 9.7e-36 154.1 161 54.0
Migut.D01264 Erythranthe guttata HOM05D004927 ORTHO05D005798 1.3e-35 153.7 159 57.2
HPP92_001413 Vanilla planifolia HOM05D004927 ORTHO05D005798 1.3e-35 153.7 149 59.7
FvH4_5g08180 Fragaria vesca HOM05D004927 ORTHO05D005798 1.7e-35 153.3 170 58.2
Sed0011812 Sechium edule HOM05D004927 ORTHO05D005798 2.2e-35 152.9 157 58.6
Lalb_Chr13g0297281 Lupinus albus HOM05D004927 ORTHO05D005798 3.7e-35 152.1 152 56.6
Medtr4g103580 Medicago truncatula HOM05D004927 ORTHO05D005798 4.8e-35 151.8 154 54.5
Lalb_Chr12g0202181 Lupinus albus HOM05D004927 ORTHO05D005798 1.4e-34 150.2 156 55.8
DCAR_026226 Daucus carota HOM05D004927 ORTHO05D005798 1.8e-34 149.8 154 57.1
Dinv04882 Davidia involucrata HOM05D004927 ORTHO05D005798 1.8e-34 149.8 125 63.2
SGA_v2.0_scaffold161G37795 Striga asiatica HOM05D004927 ORTHO05D005798 1.8e-34 149.8 210 46.2
RcHm_v2.0_Chr7g0190331 Rosa chinensis HOM05D004927 ORTHO05D005798 4.1e-34 148.7 174 58.6
arahy.Tifrunner.gnm1.ann1.9DG48R Arachis hypogaea HOM05D004927 ORTHO05D005798 9.1e-34 147.5 136 61.8
arahy.Tifrunner.gnm1.ann1.PKYK26 Arachis hypogaea HOM05D004927 ORTHO05D005798 9.1e-34 147.5 136 61.8
Eucgr.B00112 Eucalyptus grandis HOM05D004927 ORTHO05D005798 1.2e-33 147.1 110 70.0
unitig_61.g26197 Utricularia gibba HOM05D004927 ORTHO05D005798 1.2e-33 147.1 172 51.2
Psat0s2546g0040 Pisum sativum HOM05D004927 ORTHO05D005798 7.7e-33 144.4 154 52.6
Gohir.A09G247250 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.0e-32 144.1 153 54.9
CDE02G1054 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 1.3e-32 143.7 144 57.6
QL10p003733 Quercus lobata HOM05D004927 ORTHO05D005798 1.7e-32 143.3 127 59.8
Gorai.004G275800 Gossypium raimondii HOM05D004927 ORTHO05D005798 2.9e-32 142.5 161 52.2
Aqoxy3G01521 Aquilegia oxysepala HOM05D004927 ORTHO05D005798 3.8e-32 142.1 157 52.9
FAN18G3853 Fragaria x ananassa HOM05D004927 ORTHO05D005798 6.5e-32 141.4 157 59.2
FAN13G0393 Fragaria x ananassa HOM05D004927 ORTHO05D005798 1.1e-31 140.6 157 58.0
SalBow1G5982 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.4e-31 140.2 139 59.7
PSO478G0696 Papaver somniferum HOM05D004927 ORTHO05D005798 1.9e-31 139.8 152 55.9
FAN08G3438 Fragaria x ananassa HOM05D004927 ORTHO05D005798 3.2e-31 139.0 157 58.6
TPR.G19215 Trifolium pratense HOM05D004927 ORTHO05D005798 5.5e-31 138.3 154 50.6
FAN04G0012 Fragaria x ananassa HOM05D004927 ORTHO05D005798 7.2e-31 137.9 157 58.0
Nitab4.5_0016919g0010 Nicotiana tabacum HOM05D004927 ORTHO05D005798 9.4e-31 137.5 146 56.2
Lsat_1_v5_gn_4_80380 Lactuca sativa HOM05D004927 ORTHO05D005798 6.1e-30 134.8 157 53.5
PSO017G7268 Papaver somniferum HOM05D004927 ORTHO05D005798 2.3e-29 132.9 165 52.1
PSO063G5502 Papaver somniferum HOM05D004927 ORTHO05D005798 2.3e-29 132.9 159 52.2
TAR622G0157 Trochodendron aralioides HOM05D004927 ORTHO05D005798 1.1e-28 130.6 163 49.7
SalBow1G7483 Salvia bowleyana HOM05D004927 ORTHO05D005798 1.3e-27 127.1 172 48.8
PGSC0003DMG400015243 Solanum tuberosum HOM05D004927 ORTHO05D005798 1.1e-26 124.0 174 50.6
Gohir.D08G258600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.8e-26 123.2 153 51.0
Os12g0442900 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 5.3e-26 121.7 161 49.1
vmacro16676 Vaccinium macrocarpon HOM05D004927 ORTHO05D005798 6.9e-26 121.3 112 62.5
Zm00001eb169640 Zea mays HOM05D004927 ORTHO05D005798 1.5e-25 120.2 163 50.3
AagrBONN_evm.TU.Sc2ySwM_344.432 Anthoceros agrestis HOM05D004927 ORTHO05D005798 1.3e-24 117.1 145 46.9
Os11g0483600 Oryza sativa ssp. japonica HOM05D004927 ORTHO05D005798 2.9e-24 115.9 163 47.9
EL10As4g23391 Beta vulgaris HOM05D004927 ORTHO05D005798 5.0e-24 115.2 151 49.7
PSO782G2667 Papaver somniferum HOM05D004927 ORTHO05D005798 5.0e-24 115.2 153 49.7
CDE05G1557 Ceratophyllum demersum HOM05D004927 ORTHO05D005798 8.5e-24 114.4 121 57.0
ClCG06G017840 Citrullus lanatus HOM05D004927 ORTHO05D005798 1.1e-23 114.0 115 58.3
Lj9A478G96 Lonicera japonica HOM05D004927 ORTHO05D005798 7.2e-23 111.3 144 48.6
Pp3c8_10310 Physcomitrium patens HOM05D004927 ORTHO05D005798 2.1e-22 109.8 154 42.9
ATR0561G036 Amborella trichopoda HOM05D004927 ORTHO05D005798 2.0e-20 103.2 68 73.5
CAN.G352.25 Capsicum annuum HOM05D004927 ORTHO05D005798 3.3e-20 102.4 85 62.4
Migut.I00501 Erythranthe guttata HOM05D004927 ORTHO05D005798 3.3e-20 102.4 99 56.6
BolC2t12346H Brassica oleracea HOM05D001512 ORTHO05D001574 9.7e-20 100.9 116 49.1
COL.COLO4_28098 Corchorus olitorius HOM05D004927 ORTHO05D005798 2.2e-19 99.8 99 57.6
C02p62750 Brassica napus HOM05D001512 ORTHO05D001574 4.8e-19 98.6 116 48.3
Cfa018832 Carpinus fangiana HOM05D004927 ORTHO05D005798 1.2e-17 94.0 84 61.9
CBR_g27958 Chara braunii HOM05D004927 ORTHO05D005798 1.6e-17 93.6 160 40.0
Gohir.A09G246700 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.6e-17 93.6 98 57.1
Lsat_1_v5_gn_5_95420 Lactuca sativa HOM05D004927 ORTHO05D005798 2.2e-16 89.7 86 60.5
BcaC03g18207 Brassica carinata HOM05D004927 ORTHO05D005798 5.0e-16 88.6 149 40.3
CBR_g36334 Chara braunii HOM05D004927 ORTHO05D005798 2.5e-15 86.3 170 38.8
HPP92_001420 Vanilla planifolia HOM05D004927 ORTHO05D005798 5.5e-15 85.1 64 65.6
Mapoly0121s0035 Marchantia polymorpha HOM05D004927 ORTHO05D005798 2.3e-13 79.7 114 44.7
Hma1.2p1_2767F.1_g328170 Hydrangea macrophylla HOM05D004927 ORTHO05D005798 1.5e-12 77.0 86 54.7
Oeu037712.1 Olea europaea HOM05D004927 ORTHO05D005798 1.5e-12 77.0 56 64.3
Gohir.D07G062100 Gossypium hirsutum HOM05D004927 ORTHO05D005798 2.6e-12 76.3 78 57.7
SMO334G0034 Selaginella moellendorffii HOM05D004927 ORTHO05D005798 5.7e-12 75.1 166 35.5
Gohir.D09G248000 Gossypium hirsutum HOM05D004927 ORTHO05D005798 7.5e-12 74.7 71 56.3
Gohir.D01G081600 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-11 73.9 78 56.4
Gohir.D09G247201 Gossypium hirsutum HOM05D004927 ORTHO05D005798 1.3e-11 73.9 61 57.4
Gorai.007G057300 Gossypium raimondii HOM05D004927 ORTHO05D005798 1.3e-11 73.9 78 56.4
Cpa.g.sc13.128 Carica papaya HOM05D004927 ORTHO05D005798 8.2e-11 71.2 59 66.1
Gohir.D11G291800 Gossypium hirsutum HOM05D004927 ORTHO05D005798 4.1e-10 68.9 56 64.3
AUR62029623 Chenopodium quinoa HOM05D004927 ORTHO05D005798 1.1e-07 60.8 59 62.7
ECA232G0032 Erigeron canadensis HOM05D004927 ORTHO05D005798 4.2e-07 58.9 104 43.3
PRCOL_00006426 Prasinoderma coloniale HOM05D004927 ORTHO05D005798 2.1e-06 56.6 60 46.7
SEGI_27141 Sequoiadendron giganteum HOM05D004927 ORTHO05D005798 3.6e-06 55.8 55 47.3
BraA02t09201Z Brassica rapa HOM05D004927 ORTHO05D005798 4.7e-06 55.5 95 40.0


User provided reference genes

Program Settings