Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 1.3e-292 1008.8 468 100.0
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 1.0e-244 849.7 450 84.4
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 1.5e-243 845.9 449 84.9
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 7.4e-243 843.6 445 84.9
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 1.7e-242 842.4 439 86.3
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 2.8e-242 841.6 446 85.7
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 3.1e-241 838.2 440 85.2
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 5.3e-241 837.4 446 85.4
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 2.0e-240 835.5 443 85.1
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 2.6e-240 835.1 438 85.8
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 7.7e-240 833.6 433 86.6
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 7.7e-240 833.6 448 84.8
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 7.7e-240 833.6 444 84.9
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 1.0e-239 833.2 438 85.6
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 1.7e-239 832.4 438 85.4
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 2.5e-238 828.6 448 83.3
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 2.5e-238 828.6 435 86.4
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 3.2e-238 828.2 475 79.6
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 3.2e-238 828.2 449 83.7
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 1.2e-237 826.2 451 83.1
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 4.7e-237 824.3 438 85.4
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 6.1e-237 823.9 454 81.5
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 8.0e-237 823.5 451 83.4
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.0e-236 823.2 451 83.6
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.0e-236 823.2 482 79.0
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 2.3e-236 822.0 437 84.7
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 2.3e-236 822.0 453 80.8
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 3.0e-236 821.6 451 83.1
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 3.0e-236 821.6 457 81.4
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 3.9e-236 821.2 457 82.3
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 1.5e-235 819.3 467 81.2
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 1.5e-235 819.3 450 81.6
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 2.2e-234 815.5 442 83.7
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 2.8e-234 815.1 429 84.6
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 3.7e-234 814.7 437 83.8
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 3.7e-234 814.7 454 82.4
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 1.4e-233 812.8 472 80.3
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 1.4e-233 812.8 451 81.6
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 2.4e-233 812.0 445 82.0
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 4.1e-233 811.2 439 83.8
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 7.0e-233 810.4 486 77.0
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 7.0e-233 810.4 467 80.9
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 9.1e-233 810.1 428 83.9
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 1.2e-232 809.7 449 81.3
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 4.5e-232 807.7 437 83.3
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 4.5e-232 807.7 454 80.6
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 4.5e-232 807.7 435 84.4
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 7.7e-232 807.0 432 83.6
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 1.0e-231 806.6 432 84.5
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 1.5e-230 802.7 437 84.0
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 1.9e-230 802.4 445 81.1
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 7.2e-230 800.4 443 81.5
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.7e-229 798.5 442 81.7
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 2.7e-229 798.5 433 82.2
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 3.6e-229 798.1 433 82.2
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 6.1e-229 797.3 441 81.4
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 2.3e-228 795.4 436 82.1
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 3.0e-228 795.0 454 79.7
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 3.0e-228 795.0 498 74.5
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 3.0e-228 795.0 498 74.5
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 1.2e-227 793.1 435 83.2
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 2.0e-227 792.3 435 83.7
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 2.0e-227 792.3 449 81.5
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 2.0e-227 792.3 446 80.5
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 2.0e-227 792.3 446 80.5
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 4.4e-227 791.2 453 81.5
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 4.4e-227 791.2 433 83.1
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 5.7e-227 790.8 435 82.8
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 7.5e-227 790.4 455 80.2
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 9.7e-227 790.0 448 81.5
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 1.7e-226 789.3 433 82.9
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 1.7e-226 789.3 433 82.9
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 3.7e-226 788.1 450 81.3
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 6.3e-226 787.3 434 80.4
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 1.4e-225 786.2 442 80.1
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 2.4e-225 785.4 441 80.0
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 3.1e-225 785.0 434 80.4
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 3.1e-225 785.0 454 79.3
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 5.3e-225 784.3 433 82.7
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 1.2e-224 783.1 433 82.4
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 1.6e-224 782.7 432 81.2
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 2.7e-224 781.9 466 77.3
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.1e-222 776.5 481 76.3
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 2.5e-222 775.4 443 77.4
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 4.0e-220 768.1 455 76.3
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 1.5e-219 766.1 445 78.7
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 1.5e-214 749.6 433 78.5
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 3.3e-214 748.4 495 72.3
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 1.1e-209 733.4 444 75.2
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 7.8e-208 727.2 436 75.7
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 1.3e-207 726.5 457 75.1
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 1.5e-206 723.0 380 86.6
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 8.9e-204 713.8 380 83.7
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 2.7e-200 702.2 404 78.5
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 1.9e-198 696.0 444 72.5
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 1.1e-193 680.2 443 70.0
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 8.1e-189 664.1 419 71.8
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 1.5e-187 659.8 439 72.0
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 2.9e-186 655.6 435 71.5
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.1e-185 653.7 421 73.4
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 3.2e-177 625.5 432 66.0
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 3.2e-169 599.0 326 82.5
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 4.2e-169 598.6 306 87.6
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 1.1e-164 583.9 308 83.8
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 9.0e-164 580.9 445 62.7
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 9.6e-158 560.8 455 59.6
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 5.8e-155 551.6 376 69.9
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 6.4e-154 548.1 280 86.4
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 1.5e-134 483.8 272 80.1
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 4.6e-83 312.8 196 76.5
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 6.8e-71 272.3 159 78.0
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 2.6e-70 270.4 176 70.5
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 3.7e-69 266.5 235 56.2
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 9.2e-68 261.9 132 87.9
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 4.6e-67 259.6 362 45.6
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.9e-65 254.2 133 83.5
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 2.5e-65 253.8 301 49.5
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 8.9e-63 245.4 120 90.0
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 5.4e-60 236.1 142 77.5
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 3.9e-58 229.9 140 74.3
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 5.6e-49 199.5 124 70.2
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 9.6e-49 198.7 119 77.3
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 4.9e-45 186.4 249 47.0
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 4.3e-33 146.7 93 68.8
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.7e-25 119.0 77 66.2
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 8.2e-24 115.9 55 90.9
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 5.3e-23 113.2 180 40.6
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.3e-21 108.6 90 58.9
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 1.9e-20 104.8 61 75.4
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.0e-18 97.4 105 47.6
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 6.9e-15 86.3 68 60.3
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 5.7e-09 66.6 43 67.4
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 6.3e-08 63.2 57 56.1


User provided reference genes

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