Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR077G0003 Punica granatum HOM05D013431 ORTHO05D016377 2.3e-128 463.4 520 100.0
PGR083G0063 Punica granatum HOM05D013431 ORTHO05D016377 2.3e-128 463.4 520 100.0
PGR083G1603 Punica granatum HOM05D013431 ORTHO05D016377 1.6e-60 238.0 538 66.0
PGR077G0001 Punica granatum HOM05D013431 ORTHO05D016377 1.8e-56 224.6 220 63.6
PGR083G0099 Punica granatum HOM05D013431 ORTHO05D016377 1.8e-56 224.6 220 63.6
PGR083G1574 Punica granatum HOM05D013431 ORTHO05D016377 9.0e-56 222.2 538 62.3
PGR083G1588 Punica granatum HOM05D013431 ORTHO05D016377 3.8e-38 163.7 140 68.6
PGR083G1198 Punica granatum HOM05D013431 ORTHO05D016377 5.2e-27 126.7 244 39.3
Manes.09G160601 Manihot esculenta HOM05D000439 ORTHO05D002302 4.8e-17 93.6 130 42.3
Eucgr.B02676 Eucalyptus grandis HOM05D000439 ORTHO05D002302 5.3e-16 90.1 132 44.7
PGR083G0778 Punica granatum HOM05D013431 ORTHO05D016377 1.2e-15 89.0 70 67.1
Prupe.1G243600 Prunus persica HOM05D000439 ORTHO05D002302 5.9e-15 86.7 148 35.1
Prupe.6G334700 Prunus persica HOM05D000439 ORTHO05D002302 5.9e-15 86.7 131 39.7
RcHm_v2.0_Chr3g0452961 Rosa chinensis HOM05D012224 ORTHO05D017959 5.9e-15 86.7 132 40.9
CiPaw.07G011500 Carya illinoinensis HOM05D000439 ORTHO05D002302 7.7e-15 86.3 132 39.4
Eucgr.B01763 Eucalyptus grandis HOM05D000439 ORTHO05D002302 1.0e-14 85.9 132 45.5
Rhsim07G0176800 Rhododendron simsii HOM05D000439 ORTHO05D002302 1.0e-14 85.9 132 40.9
MD04G1214400 Malus domestica HOM05D000439 ORTHO05D002302 2.9e-14 84.3 129 38.8
FAN04G2682 Fragaria x ananassa HOM05D000439 ORTHO05D002302 6.5e-14 83.2 150 36.7
vmacro05061 Vaccinium macrocarpon HOM05D000439 ORTHO05D002302 1.1e-13 82.4 131 38.2
MD04G1214300 Malus domestica HOM05D000439 ORTHO05D002302 1.5e-13 82.0 144 37.5
CSS0048396 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 2.5e-13 81.3 131 40.5
FvH4_5g20491 Fragaria vesca HOM05D000439 ORTHO05D002302 2.5e-13 81.3 155 36.1
Nitab4.5_0004296g0020 Nicotiana tabacum HOM05D000439 ORTHO05D002302 3.2e-13 80.9 132 34.8
CSS0004188 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 4.2e-13 80.5 130 40.8
Ciclev10000734m.g Citrus clementina HOM05D000439 ORTHO05D002302 5.5e-13 80.1 173 32.9
Prupe.6G334600 Prunus persica HOM05D000439 ORTHO05D002302 5.5e-13 80.1 133 39.8
RcHm_v2.0_Chr7g0205851 Rosa chinensis HOM05D000439 ORTHO05D002302 5.5e-13 80.1 138 38.4
FvH4_6g04261 Fragaria vesca HOM05D000439 ORTHO05D002302 7.2e-13 79.7 137 37.2
FAN14G4802 Fragaria x ananassa HOM05D000439 ORTHO05D002302 7.2e-13 79.7 137 37.2
RcHm_v2.0_Chr3g0452981 Rosa chinensis HOM05D000439 ORTHO05D002302 9.4e-13 79.3 136 38.2
FAN05G1097 Fragaria x ananassa HOM05D004471 ORTHO05D005345 1.2e-12 79.0 121 39.7
Nitab4.5_0007864g0010 Nicotiana tabacum HOM05D000439 ORTHO05D002302 1.2e-12 79.0 132 34.1
FAN18G3868 Fragaria x ananassa HOM05D000439 ORTHO05D002302 2.1e-12 78.2 149 36.2
FAN13G3290 Fragaria x ananassa HOM05D000439 ORTHO05D002302 2.7e-12 77.8 149 35.6
Ciclev10003235m.g Citrus clementina HOM05D000439 ORTHO05D002302 3.6e-12 77.4 171 33.9
Ciclev10000115m.g Citrus clementina HOM05D000439 ORTHO05D002302 4.7e-12 77.0 168 33.9
RcHm_v2.0_Chr3g0452971 Rosa chinensis HOM05D000439 ORTHO05D002302 4.7e-12 77.0 118 39.0
FvH4_6g04320 Fragaria vesca HOM05D000439 ORTHO05D002302 6.1e-12 76.6 128 39.1
RcHm_v2.0_Chr3g0453001 Rosa chinensis HOM05D000439 ORTHO05D002302 6.1e-12 76.6 133 39.8
Solyc01g098240.3 Solanum lycopersicum HOM05D000439 ORTHO05D001363 6.1e-12 76.6 162 33.3
PGSC0003DMG400022488 Solanum tuberosum HOM05D000439 ORTHO05D002302 6.1e-12 76.6 132 36.4
Nitab4.5_0012670g0010 Nicotiana tabacum HOM05D000439 ORTHO05D036904 8.0e-12 76.3 132 33.3
Prupe.6G334100 Prunus persica HOM05D000439 ORTHO05D002302 8.0e-12 76.3 134 36.6
Ciclev10003722m.g Citrus clementina HOM05D000439 ORTHO05D002302 1.0e-11 75.9 161 34.8
Atru.chr2.611 Acer truncatum HOM05D000439 ORTHO05D002302 1.4e-11 75.5 174 35.1
MD12G1228900 Malus domestica HOM05D000439 ORTHO05D002302 1.4e-11 75.5 139 35.3
Nitab4.5_0001165g0170 Nicotiana tabacum HOM05D000439 ORTHO05D001363 1.8e-11 75.1 127 37.8
Sopen01g041820 Solanum pennellii HOM05D000439 ORTHO05D002302 1.8e-11 75.1 143 35.0
MD12G1229200 Malus domestica HOM05D000439 ORTHO05D002302 2.3e-11 74.7 142 34.5
PSO675G0680 Papaver somniferum HOM05D000439 ORTHO05D001363 2.3e-11 74.7 130 39.2
QL03p002685 Quercus lobata HOM05D000439 ORTHO05D002302 2.3e-11 74.7 132 37.9
COL.COLO4_36068 Corchorus olitorius HOM05D000439 ORTHO05D001363 3.0e-11 74.3 132 37.1
FAN05G1628 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.0e-11 73.9 121 38.0
PSO541G3778 Papaver somniferum HOM05D000439 ORTHO05D001363 4.0e-11 73.9 130 36.9
TWI56G0175 Tripterygium wilfordii HOM05D000439 ORTHO05D002302 4.0e-11 73.9 137 36.5
Prupe.6G334200 Prunus persica HOM05D000439 ORTHO05D002302 5.2e-11 73.6 139 34.5
Gohir.D11G246820 Gossypium hirsutum HOM05D000439 ORTHO05D002302 6.8e-11 73.2 128 38.3
Manes.09G160800 Manihot esculenta HOM05D000439 ORTHO05D012413 6.8e-11 73.2 129 38.0
RcHm_v2.0_Chr1g0379641 Rosa chinensis HOM05D000439 ORTHO05D002302 6.8e-11 73.2 136 39.7
RcHm_v2.0_Chr3g0453091 Rosa chinensis HOM05D000439 ORTHO05D002302 6.8e-11 73.2 167 34.1
Duzib177G0767 Durio zibethinus HOM05D000439 ORTHO05D002302 8.8e-11 72.8 128 35.9
Gohir.A11G236300 Gossypium hirsutum HOM05D000439 ORTHO05D002302 8.8e-11 72.8 128 38.3
MD12G1229100 Malus domestica HOM05D000439 ORTHO05D002302 8.8e-11 72.8 133 38.3
Rhsim01G0002600 Rhododendron simsii HOM05D000439 ORTHO05D001363 8.8e-11 72.8 131 35.1
RcHm_v2.0_Chr3g0452991 Rosa chinensis HOM05D000439 ORTHO05D002302 8.8e-11 72.8 130 36.9
SalBow4G1635 Salvia bowleyana HOM05D000439 ORTHO05D001363 8.8e-11 72.8 126 34.1
TAR629G2317 Trochodendron aralioides HOM05D000439 ORTHO05D001363 8.8e-11 72.8 125 39.2
Nitab4.5_0000245g0140 Nicotiana tabacum HOM05D000439 ORTHO05D002302 1.2e-10 72.4 125 37.6
QL03p002736 Quercus lobata HOM05D000439 ORTHO05D002302 1.2e-10 72.4 129 36.4
CSS0036023 Camellia sinensis var. sinensis HOM05D000439 ORTHO05D002302 1.5e-10 72.0 156 36.5
vmacro05059 Vaccinium macrocarpon HOM05D000439 ORTHO05D001363 1.5e-10 72.0 124 37.1
Dinv26587 Davidia involucrata HOM05D000439 ORTHO05D002302 2.0e-10 71.6 131 37.4
Gorai.007G262900 Gossypium raimondii HOM05D000439 ORTHO05D002302 2.0e-10 71.6 128 37.5
Lj7C482G14 Lonicera japonica HOM05D000439 ORTHO05D002302 2.0e-10 71.6 138 34.8
FvH4_7g30690 Fragaria vesca HOM05D000439 ORTHO05D002302 2.6e-10 71.2 121 44.6
FAN06G0033 Fragaria x ananassa HOM05D000439 ORTHO05D002302 2.6e-10 71.2 121 44.6
Gorai.007G263000 Gossypium raimondii HOM05D000439 ORTHO05D001363 2.6e-10 71.2 128 37.5
CAN.G134.216 Capsicum annuum HOM05D000439 ORTHO05D002302 3.4e-10 70.9 131 35.1
Ciclev10003673m.g Citrus clementina HOM05D000439 ORTHO05D002302 3.4e-10 70.9 141 32.6
Gohir.D11G246880 Gossypium hirsutum HOM05D000160 ORTHO05D002302 3.4e-10 70.9 128 37.5
Sed0021572 Sechium edule HOM05D000439 ORTHO05D002302 3.4e-10 70.9 156 35.3
Ciclev10000552m.g Citrus clementina HOM05D000439 ORTHO05D002302 4.4e-10 70.5 168 35.1
Gohir.A11G236340 Gossypium hirsutum HOM05D000439 ORTHO05D002302 4.4e-10 70.5 128 36.7
MD04G1214500 Malus domestica HOM05D000439 ORTHO05D002302 5.7e-10 70.1 133 37.6
MELO3C020867.2 Cucumis melo HOM05D000439 ORTHO05D002302 1.3e-09 68.9 156 33.3
TAR627G0997 Trochodendron aralioides HOM05D000439 ORTHO05D001363 1.3e-09 68.9 125 35.2
FAN03G1422 Fragaria x ananassa HOM05D000439 ORTHO05D002302 1.7e-09 68.6 145 39.3
FvH4_6g04550 Fragaria vesca HOM05D000439 ORTHO05D002302 2.2e-09 68.2 154 32.5
Thecc.05G251700 Theobroma cacao HOM05D000439 ORTHO05D002302 2.8e-09 67.8 139 34.5
MD12G1013700 Malus domestica HOM05D000439 ORTHO05D002302 3.7e-09 67.4 121 36.4
MD14G1011100 Malus domestica HOM05D000439 ORTHO05D002302 3.7e-09 67.4 121 35.5
EL10Ac3g05938 Beta vulgaris HOM05D000439 ORTHO05D002302 4.8e-09 67.0 152 34.2
Ciclev10003572m.g Citrus clementina HOM05D000439 ORTHO05D002302 4.8e-09 67.0 108 35.2
FvH4_6g04310 Fragaria vesca HOM05D000439 ORTHO05D002302 4.8e-09 67.0 130 36.2
FvH4_6g04380 Fragaria vesca HOM05D000439 ORTHO05D002302 4.8e-09 67.0 196 30.1
FAN10G1999 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.8e-09 67.0 121 43.8
FAN10G2641 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.8e-09 67.0 121 43.8
FAN14G5795 Fragaria x ananassa HOM05D000439 ORTHO05D002302 4.8e-09 67.0 196 30.1
Peaxi162Scf00225g00521 Petunia axillaris HOM05D000439 ORTHO05D002302 4.8e-09 67.0 132 34.8
CANSAT80G2917 Cannabis sativa HOM05D000439 ORTHO05D033953 6.3e-09 66.6 178 32.6
ClCG02G012450 Citrullus lanatus HOM05D000439 ORTHO05D002302 6.3e-09 66.6 191 30.9
FAN09G3873 Fragaria x ananassa HOM05D000439 ORTHO05D002302 6.3e-09 66.6 143 35.7
Gorai.013G116600 Gossypium raimondii HOM05D000439 ORTHO05D002302 6.3e-09 66.6 131 33.6
Manes.09G160701 Manihot esculenta HOM05D000439 ORTHO05D002302 6.3e-09 66.6 130 31.5
FvH4_6g04431 Fragaria vesca HOM05D000439 ORTHO05D002302 8.3e-09 66.2 197 28.9
FAN09G0983 Fragaria x ananassa HOM05D000439 ORTHO05D002302 8.3e-09 66.2 143 35.7
MD04G1214700 Malus domestica HOM05D000439 ORTHO05D002302 8.3e-09 66.2 141 32.6
QL03p002724 Quercus lobata HOM05D000439 ORTHO05D002302 8.3e-09 66.2 131 34.4
MD04G1214600 Malus domestica HOM05D000439 ORTHO05D002302 1.1e-08 65.9 111 41.4
RcHm_v2.0_Chr3g0453061 Rosa chinensis HOM05D000439 ORTHO05D002302 1.1e-08 65.9 137 34.3
RcHm_v2.0_Chr3g0453081 Rosa chinensis HOM05D000439 ORTHO05D002302 1.1e-08 65.9 137 34.3
CsaV3_2G016580 Cucumis sativus L. HOM05D000439 ORTHO05D002302 1.8e-08 65.1 156 32.7
FvH4_6g04390 Fragaria vesca HOM05D000439 ORTHO05D002302 1.8e-08 65.1 143 35.0
MD03G1060500 Malus domestica HOM05D000439 ORTHO05D002302 1.8e-08 65.1 114 38.6
SGA_v2.0_scaffold138G35225 Striga asiatica HOM05D000439 ORTHO05D002302 1.8e-08 65.1 147 34.0
Thecc.05G251600 Theobroma cacao HOM05D000439 ORTHO05D002302 1.8e-08 65.1 124 34.7
MBI19_g33781_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D001363 2.4e-08 64.7 148 32.4
CANSAT80G2684 Cannabis sativa HOM05D000439 ORTHO05D033953 4.1e-08 63.9 178 32.0
CANSAT54G1104 Cannabis sativa HOM05D000439 ORTHO05D002302 5.4e-08 63.5 122 39.3
Nitab4.5_0001453g0030 Nicotiana tabacum HOM05D000439 ORTHO05D002302 5.4e-08 63.5 127 33.1
TWI56G0825 Tripterygium wilfordii HOM05D000160 ORTHO05D000914 5.4e-08 63.5 127 34.6
FAN14G4589 Fragaria x ananassa HOM05D000439 ORTHO05D002302 7.0e-08 63.2 134 35.1
Nn1g03256 Nelumbo nucifera HOM05D000439 ORTHO05D001363 7.0e-08 63.2 141 34.8
Gohir.D13G104000 Gossypium hirsutum HOM05D000439 ORTHO05D002302 9.1e-08 62.8 131 32.1
Prupe.6G334500 Prunus persica HOM05D000439 ORTHO05D002302 9.1e-08 62.8 137 32.8
MSTRG.18325 Avicennia marina HOM05D000439 ORTHO05D002302 1.2e-07 62.4 128 33.6
Gohir.A13G100400 Gossypium hirsutum HOM05D000439 ORTHO05D002302 1.2e-07 62.4 131 32.1
Sabra05G0041000 Salix brachista HOM05D000439 ORTHO05D002302 1.2e-07 62.4 166 30.1
Peaxi162Scf00394g01016 Petunia axillaris HOM05D000439 ORTHO05D002302 2.0e-07 61.6 127 33.9
RcHm_v2.0_Chr7g0237441 Rosa chinensis HOM05D000439 ORTHO05D002302 2.0e-07 61.6 174 31.0
SEGI_10765 Sequoiadendron giganteum HOM05D000439 ORTHO05D001363 2.0e-07 61.6 158 31.6
Eucgr.B01769 Eucalyptus grandis HOM05D000439 ORTHO05D002302 2.7e-07 61.2 127 34.6
Potri.005G044100 Populus trichocarpa HOM05D000439 ORTHO05D002302 3.5e-07 60.8 166 29.5
Aqoxy1G04005 Aquilegia oxysepala HOM05D000439 ORTHO05D001363 4.5e-07 60.5 114 37.7
Duzib106G2048 Durio zibethinus HOM05D000439 ORTHO05D002302 7.7e-07 59.7 122 33.6
Potri.005G043900 Populus trichocarpa HOM05D000439 ORTHO05D002302 7.7e-07 59.7 166 29.5
Migut.D00433 Erythranthe guttata HOM05D000439 ORTHO05D002302 1.0e-06 59.3 136 33.1
Dinv26588 Davidia involucrata HOM05D000439 ORTHO05D002302 1.3e-06 58.9 78 47.4
Medtr2g091370 Medicago truncatula HOM05D000439 ORTHO05D002302 1.3e-06 58.9 163 33.7
MBI16_g11555_MAGBIO Magnolia biondii HOM05D000439 ORTHO05D001363 1.7e-06 58.5 90 44.4
Prupe.6G334900 Prunus persica HOM05D000439 ORTHO05D002302 1.7e-06 58.5 155 30.3
THA.LOC104818665 Tarenaya hassleriana HOM05D008387 ORTHO05D010446 1.7e-06 58.5 127 33.1
COL.COLO4_36066 Corchorus olitorius HOM05D000439 ORTHO05D002302 2.2e-06 58.2 122 34.4
FvH4_6g04410 Fragaria vesca HOM05D000439 ORTHO05D002302 2.2e-06 58.2 132 32.6
Medtr2g091030 Medicago truncatula HOM05D000439 ORTHO05D002302 2.9e-06 57.8 139 33.1
Potri.005G044000 Populus trichocarpa HOM05D000439 ORTHO05D002302 2.9e-06 57.8 166 28.3
FAN14G4154 Fragaria x ananassa HOM05D000527 ORTHO05D000559 5.0e-06 57.0 120 35.0
CiPaw.07G010900 Carya illinoinensis HOM05D000439 ORTHO05D001363 6.5e-06 56.6 129 32.6
Duzib106G1037 Durio zibethinus HOM05D000439 ORTHO05D002302 6.5e-06 56.6 139 28.8
MD12G1231700 Malus domestica HOM05D000439 ORTHO05D002302 6.5e-06 56.6 127 32.3
Lj9P676T52 Lonicera japonica HOM05D000439 ORTHO05D002302 8.5e-06 56.2 124 30.6
Psat5g276000 Pisum sativum HOM05D000439 ORTHO05D002302 8.5e-06 56.2 148 31.8


User provided reference genes

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