Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 1.6e-67 259.2 129 100.0
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 1.7e-64 249.2 127 96.1
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.6e-62 242.7 129 93.0
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 6.1e-62 240.7 129 92.2
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.4e-61 239.6 129 93.0
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 2.3e-61 238.8 129 92.2
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 3.9e-61 238.0 129 92.2
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 5.1e-61 237.7 129 89.9
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 6.7e-61 237.3 129 91.5
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 6.7e-61 237.3 129 91.5
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 8.8e-61 236.9 129 92.2
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 1.1e-60 236.5 129 90.7
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 1.1e-60 236.5 129 89.9
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 4.4e-60 234.6 129 90.7
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 1.3e-59 233.0 128 89.8
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 1.7e-59 232.6 127 89.0
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 2.2e-59 232.3 129 88.4
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 2.2e-59 232.3 127 89.8
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 2.2e-59 232.3 128 89.1
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 2.2e-59 232.3 129 89.1
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.8e-59 231.9 129 89.1
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 6.3e-59 230.7 128 89.8
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 1.1e-58 229.9 129 89.1
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 3.1e-58 228.4 124 91.1
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 4.1e-58 228.0 129 86.8
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 4.1e-58 228.0 120 91.7
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.0e-57 225.7 119 92.4
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 2.6e-57 225.3 129 87.6
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 2.6e-57 225.3 127 85.8
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 4.5e-57 224.6 129 86.0
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 7.7e-57 223.8 129 84.5
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 7.7e-57 223.8 129 86.0
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 7.7e-57 223.8 129 86.0
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.7e-56 222.6 119 91.6
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 1.7e-56 222.6 129 85.3
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 1.7e-56 222.6 129 85.3
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.2e-56 222.2 129 86.0
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 2.2e-56 222.2 129 85.3
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 2.9e-56 221.9 129 85.3
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 86.0
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 85.3
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 83.7
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 5.0e-56 221.1 129 85.3
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 6.5e-56 220.7 129 85.3
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 6.5e-56 220.7 129 84.5
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 82.9
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 82.9
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 8.5e-56 220.3 129 82.9
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 8.5e-56 220.3 127 85.0
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 8.5e-56 220.3 119 87.4
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 1.1e-55 219.9 129 85.3
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 1.1e-55 219.9 129 83.7
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 1.4e-55 219.5 129 84.5
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 1.4e-55 219.5 119 87.4
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 1.4e-55 219.5 129 83.7
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 1.9e-55 219.2 119 90.8
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 82.9
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 83.7
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 83.7
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 3.2e-55 218.4 127 81.9
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 3.2e-55 218.4 129 82.9
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 4.2e-55 218.0 127 83.5
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 5.5e-55 217.6 129 83.7
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 7.2e-55 217.2 127 82.7
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 7.2e-55 217.2 121 86.8
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 7.2e-55 217.2 129 82.9
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 9.4e-55 216.9 129 84.5
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 9.4e-55 216.9 119 85.7
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 1.6e-54 216.1 119 89.1
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 2.1e-54 215.7 123 83.7
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.1e-54 215.7 119 87.4
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 2.7e-54 215.3 129 82.2
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 2.7e-54 215.3 130 83.1
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 3.6e-54 214.9 127 82.7
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 82.2
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 79.1
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 4.7e-54 214.5 129 80.6
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 1.4e-53 213.0 127 81.1
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 1.8e-53 212.6 127 81.9
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.0e-53 211.8 129 79.1
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 5.2e-53 211.1 119 85.7
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 5.2e-53 211.1 129 80.6
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 1.1e-52 209.9 119 84.9
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 1.1e-52 209.9 129 82.2
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 2.0e-52 209.1 127 80.3
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 5.7e-52 207.6 122 82.8
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 1.3e-51 206.5 119 84.9
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 1.7e-51 206.1 121 81.8
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 1.7e-51 206.1 121 81.8
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 1.7e-51 206.1 119 84.0
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 2.8e-51 205.3 119 84.0
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 6.3e-51 204.1 119 83.2
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 6.3e-51 204.1 119 84.0
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 1.4e-50 203.0 129 78.3
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 83.2
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 82.4
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 79.8
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 82.4
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 4.1e-50 201.4 113 86.7
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 5.3e-50 201.1 129 76.7
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 9.1e-50 200.3 127 78.7
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 9.1e-50 200.3 117 81.2
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 2.6e-49 198.7 128 74.2
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 81.5
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 1.3e-48 196.4 122 80.3
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 2.2e-48 195.7 148 69.6
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 2.9e-48 195.3 146 67.8
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 2.9e-48 195.3 128 77.3
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 5.0e-48 194.5 127 78.0
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 5.5e-47 191.0 119 75.6
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 1.2e-46 189.9 119 79.0
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 8.0e-46 187.2 107 85.0
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.7e-45 184.1 130 74.6
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 6.7e-45 184.1 122 75.4
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 1.5e-44 183.0 107 84.1
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 5.7e-44 181.0 105 84.8
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.7e-43 179.5 119 73.1
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.7e-43 178.3 121 75.2
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 6.3e-43 177.6 133 71.4
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 2.4e-42 175.6 129 70.5
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 2.5e-39 165.6 96 85.4
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 5.5e-39 164.5 109 78.0
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.1e-38 162.5 95 84.2
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 2.1e-38 162.5 96 84.4
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 5.7e-36 154.5 100 77.0
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 2.8e-35 152.1 129 60.5
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 3.7e-35 151.8 91 80.2
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 4.5e-33 144.8 113 58.4
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 1.0e-32 143.7 143 53.8
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 1.5e-31 139.8 87 78.2
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 6.1e-30 134.4 141 50.4
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 8.0e-30 134.0 99 61.6
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.0e-29 133.7 92 73.9
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 9.8e-28 127.1 119 52.9
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 8.6e-16 87.4 51 84.3
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 2.7e-09 65.9 39 74.4
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.9e-07 59.7 39 74.4
Nn5g29273 Nelumbo nucifera HOM05D005344 ORTHO05D006444 5.6e-07 58.2 32 81.2
CBR_g48744 Chara braunii HOM05D005344 ORTHO05D006444 4.7e-06 55.1 66 39.4
Sed0016125 Sechium edule HOM05D005344 ORTHO05D006444 6.2e-06 54.7 31 74.2


User provided reference genes

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