Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0008 Punica granatum HOM05D004405 ORTHO05D005613 3.4e-130 468.4 243 100.0
Eucgr.F00243 Eucalyptus grandis HOM05D004405 ORTHO05D005613 1.9e-80 303.1 250 64.0
Manes.18G032800 Manihot esculenta HOM05D004405 ORTHO05D005613 5.1e-78 295.0 246 61.8
CiPaw.15G061900 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.7e-76 288.9 246 62.2
Duzib093G0211 Durio zibethinus HOM05D004405 ORTHO05D005613 6.2e-76 288.1 246 62.6
Thecc.08G011300 Theobroma cacao HOM05D004405 ORTHO05D005613 6.2e-76 288.1 246 63.0
TWI36G1713 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 8.2e-76 287.7 247 61.5
QL02p005410 Quercus lobata HOM05D004405 ORTHO05D005613 1.8e-75 286.6 246 60.6
Haze_17546 Corylus avellana HOM05D004405 ORTHO05D005613 2.4e-75 286.2 246 60.6
Haze_17555 Corylus avellana HOM05D004405 ORTHO05D005613 2.4e-75 286.2 246 60.6
Hma1.2p1_0982F.1_g243850 Hydrangea macrophylla HOM05D004405 ORTHO05D005613 3.1e-75 285.8 246 60.6
TAR381G0414 Trochodendron aralioides HOM05D004405 ORTHO05D005613 3.1e-75 285.8 247 59.9
Prupe.1G439200 Prunus persica HOM05D004405 ORTHO05D005613 5.3e-75 285.0 248 58.9
Lalb_Chr24g0399241 Lupinus albus HOM05D004405 ORTHO05D005613 2.6e-74 282.7 235 58.7
Sp1g34510 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.6e-74 281.2 244 60.2
SpUn0102_0010 Schrenkiella parvula HOM05D004405 ORTHO05D005613 7.6e-74 281.2 244 60.2
Dinv35974 Davidia involucrata HOM05D004405 ORTHO05D005613 1.3e-73 280.4 248 58.9
Duzib116G0463 Durio zibethinus HOM05D004405 ORTHO05D005613 1.3e-73 280.4 246 62.2
THA.LOC104813205 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.9e-73 279.3 245 60.0
Lalb_Chr14g0368801 Lupinus albus HOM05D004405 ORTHO05D005613 4.9e-73 278.5 188 67.0
Potri.014G032400 Populus trichocarpa HOM05D004405 ORTHO05D005613 8.4e-73 277.7 246 60.2
Sabra14G0022800 Salix brachista HOM05D004405 ORTHO05D005613 1.1e-72 277.3 244 59.0
Glyma.17G243600 Glycine max HOM05D004405 ORTHO05D005613 2.5e-72 276.2 186 67.2
BcaB04g17525 Brassica carinata HOM05D004405 ORTHO05D005613 4.2e-72 275.4 241 59.3
TWI36G1445 Tripterygium wilfordii HOM05D004405 ORTHO05D005613 7.1e-72 274.6 247 59.9
Thhalv10011700m.g Eutrema salsugineum HOM05D004405 ORTHO05D005613 9.3e-72 274.2 244 59.8
Nn1g05838 Nelumbo nucifera HOM05D004405 ORTHO05D005613 9.3e-72 274.2 244 57.8
VMungo0647G1810 Vigna mungo HOM05D004405 ORTHO05D005613 9.3e-72 274.2 243 57.6
COL.COLO4_26473 Corchorus olitorius HOM05D004405 ORTHO05D005613 1.2e-71 273.9 246 61.4
Phvul.001G020600 Phaseolus vulgaris HOM05D004405 ORTHO05D005613 1.2e-71 273.9 243 57.6
RcHm_v2.0_Chr6g0307421 Rosa chinensis HOM05D004405 ORTHO05D005613 1.2e-71 273.9 249 59.0
Medtr1g019810 Medicago truncatula HOM05D004405 ORTHO05D005613 2.1e-71 273.1 234 57.7
THA.LOC104806948 Tarenaya hassleriana HOM05D004405 ORTHO05D005613 2.1e-71 273.1 242 59.5
A08p05640 Brassica napus HOM05D004405 ORTHO05D005613 2.7e-71 272.7 246 59.3
Cpa.g.sc8.57 Carica papaya HOM05D004405 ORTHO05D005613 2.7e-71 272.7 233 60.5
Ca_13303_v3 Cicer arietinum L. HOM05D004405 ORTHO05D005613 4.6e-71 271.9 227 58.6
vmacro21541 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 4.6e-71 271.9 243 56.8
CsaV3_2G028080 Cucumis sativus L. HOM05D004405 ORTHO05D005613 6.1e-71 271.6 248 58.5
Nitab4.5_0000686g0020 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.1e-71 271.6 244 58.6
BcaC07g37214 Brassica carinata HOM05D004405 ORTHO05D005613 7.9e-71 271.2 244 59.0
Psat6g012760 Pisum sativum HOM05D004405 ORTHO05D005613 7.9e-71 271.2 243 57.2
BcaC08g42948 Brassica carinata HOM05D004405 ORTHO05D005613 1.0e-70 270.8 245 59.6
C06p01920 Brassica napus HOM05D004405 ORTHO05D005613 1.0e-70 270.8 245 59.6
BraA08t32566Z Brassica rapa HOM05D004405 ORTHO05D005613 1.3e-70 270.4 246 58.9
Cc10_g04350 Coffea canephora HOM05D004405 ORTHO05D005613 1.3e-70 270.4 247 58.7
Glyma.14G081700 Glycine max HOM05D004405 ORTHO05D005613 1.3e-70 270.4 243 58.4
Gohir.D06G015000 Gossypium hirsutum HOM05D004405 ORTHO05D005613 1.3e-70 270.4 246 59.8
Gohir.A06G016900 Gossypium hirsutum HOM05D004405 ORTHO05D005613 2.3e-70 269.6 246 59.8
TPR.G13673 Trifolium pratense HOM05D004405 ORTHO05D005613 2.3e-70 269.6 240 57.1
C08p06290 Brassica napus HOM05D004405 ORTHO05D005613 3.0e-70 269.2 246 58.9
BolC8t47475H Brassica oleracea HOM05D004405 ORTHO05D005613 3.0e-70 269.2 246 58.9
Solyc04g079180.3 Solanum lycopersicum HOM05D004405 ORTHO05D005613 3.0e-70 269.2 245 57.1
CSS0021517 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.9e-70 268.9 185 68.1
GSVIVG01009527001 Vitis vinifera HOM05D004405 ORTHO05D005613 5.1e-70 268.5 245 57.1
MSTRG.9635 Avicennia marina HOM05D004405 ORTHO05D005613 6.7e-70 268.1 243 57.2
MD15G1085100 Malus domestica HOM05D004405 ORTHO05D005613 6.7e-70 268.1 246 56.5
A10p06390 Brassica napus HOM05D004405 ORTHO05D005613 8.7e-70 267.7 245 59.2
PGSC0003DMG400008025 Solanum tuberosum HOM05D004405 ORTHO05D005613 8.7e-70 267.7 245 56.7
Gorai.010G017800 Gossypium raimondii HOM05D004405 ORTHO05D005613 1.1e-69 267.3 245 59.2
Carub.0001s3623 Capsella rubella HOM05D004405 ORTHO05D005613 1.5e-69 266.9 244 57.4
MD08G1103900 Malus domestica HOM05D004405 ORTHO05D005613 1.5e-69 266.9 246 55.7
Peaxi162Scf00528g00045 Petunia axillaris HOM05D004405 ORTHO05D005613 1.5e-69 266.9 243 58.0
CARHR037030 Cardamine hirsuta HOM05D004405 ORTHO05D005613 1.9e-69 266.5 244 57.0
CSS0002613 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-69 266.2 251 57.8
Nitab4.5_0001101g0090 Nicotiana tabacum HOM05D004405 ORTHO05D005613 3.3e-69 265.8 244 57.4
Sopen04g032790 Solanum pennellii HOM05D004405 ORTHO05D005613 3.3e-69 265.8 245 56.3
ClCG08G015700 Citrullus lanatus HOM05D004405 ORTHO05D005613 4.3e-69 265.4 248 58.5
SGA_v2.0_scaffold114G31897 Striga asiatica HOM05D004405 ORTHO05D005613 9.7e-69 264.2 258 55.8
Ciclev10002311m.g Citrus clementina HOM05D004405 ORTHO05D005613 1.3e-68 263.8 246 56.1
Lj5C9T2 Lonicera japonica HOM05D004405 ORTHO05D005613 1.3e-68 263.8 181 68.5
arahy.Tifrunner.gnm1.ann1.G214E9 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.6e-68 263.5 246 56.9
arahy.Tifrunner.gnm1.ann1.P974E5 Arachis hypogaea HOM05D004405 ORTHO05D005613 1.6e-68 263.5 246 56.9
Lj5C589T2 Lonicera japonica HOM05D004405 ORTHO05D005613 2.8e-68 262.7 181 68.0
Lj5g0011335 Lotus japonicus HOM05D004405 ORTHO05D005613 2.8e-68 262.7 233 57.5
CSS0015821 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 3.7e-68 262.3 178 69.1
Actinidia23262 Actinidia chinensis HOM05D004405 ORTHO05D005613 8.2e-68 261.2 242 58.7
BcaB07g33838 Brassica carinata HOM05D004405 ORTHO05D005613 8.2e-68 261.2 244 58.6
PGR031G1065 Punica granatum HOM05D004405 ORTHO05D005613 1.1e-67 260.8 231 60.2
Atru.chr7.31 Acer truncatum HOM05D004405 ORTHO05D005613 1.8e-67 260.0 248 57.3
Lj4A775T68 Lonicera japonica HOM05D004405 ORTHO05D005613 2.4e-67 259.6 178 68.0
Aa31sc924G10 Aethionema arabicum HOM05D004405 ORTHO05D005613 3.1e-67 259.2 261 57.1
Aqoxy5G01271 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 5.3e-67 258.5 251 55.4
MELO3C010886.2 Cucumis melo HOM05D004405 ORTHO05D005613 5.3e-67 258.5 248 57.3
MSTRG.4418 Avicennia marina HOM05D004405 ORTHO05D005613 9.0e-67 257.7 243 56.4
Cfa018524 Carpinus fangiana HOM05D004405 ORTHO05D005613 9.0e-67 257.7 176 68.2
FAN15G0428 Fragaria x ananassa HOM05D004405 ORTHO05D005613 1.2e-66 257.3 246 56.5
Rhsim06G0048000 Rhododendron simsii HOM05D000235 ORTHO05D000147 1.2e-66 257.3 182 64.3
SGA_v2.0_scaffold7G04073 Striga asiatica HOM05D004405 ORTHO05D005613 1.2e-66 257.3 254 55.1
Migut.D01835 Erythranthe guttata HOM05D004405 ORTHO05D005613 1.5e-66 256.9 245 58.0
FvH4_2g34650 Fragaria vesca HOM05D004405 ORTHO05D005613 2.0e-66 256.5 244 55.7
FAN20G0125 Fragaria x ananassa HOM05D004405 ORTHO05D005613 2.0e-66 256.5 243 56.4
CAN.G1422.6 Capsicum annuum HOM05D004405 ORTHO05D005613 3.4e-66 255.8 215 59.1
FAN27G0612 Fragaria x ananassa HOM05D004405 ORTHO05D005613 3.4e-66 255.8 245 56.3
HanXRQChr04g0103551 Helianthus annuus HOM05D004405 ORTHO05D005613 1.3e-65 253.8 243 57.2
ECA233G0805 Erigeron canadensis HOM05D004405 ORTHO05D005613 1.7e-65 253.4 242 57.9
ECA247G2210 Erigeron canadensis HOM05D004405 ORTHO05D005613 2.9e-65 252.7 178 69.7
CiPaw.16G046000 Carya illinoinensis HOM05D004405 ORTHO05D005613 3.8e-65 252.3 163 73.6
DCAR_015085 Daucus carota HOM05D004405 ORTHO05D005613 3.8e-65 252.3 245 56.7
Aa31sc213G20 Aethionema arabicum HOM05D004405 ORTHO05D005613 5.0e-65 251.9 178 66.3
PSO782G1589 Papaver somniferum HOM05D004405 ORTHO05D005613 5.0e-65 251.9 260 51.9
PSO063G4876 Papaver somniferum HOM05D004405 ORTHO05D005613 6.5e-65 251.5 255 53.7
Sed0012636 Sechium edule HOM05D004405 ORTHO05D005613 6.5e-65 251.5 248 54.4
AT1G47420 Arabidopsis thaliana HOM05D004405 ORTHO05D005613 1.1e-64 250.8 185 64.3
CANSAT54G1019 Cannabis sativa HOM05D004405 ORTHO05D005613 1.9e-64 250.0 250 54.0
AL1G53710 Arabidopsis lyrata HOM05D004405 ORTHO05D005613 3.2e-64 249.2 185 63.8
Nn5g30223 Nelumbo nucifera HOM05D004405 ORTHO05D005613 3.2e-64 249.2 248 54.8
Nitab4.5_0000453g0210 Nicotiana tabacum HOM05D004405 ORTHO05D005613 4.2e-64 248.8 244 55.3
ATR0824G121 Amborella trichopoda HOM05D004405 ORTHO05D005613 1.2e-63 247.3 180 65.6
Sopen12g030800 Solanum pennellii HOM05D004405 ORTHO05D005613 1.2e-63 247.3 243 55.1
PGSC0003DMG400015445 Solanum tuberosum HOM05D004405 ORTHO05D005613 2.1e-63 246.5 239 55.2
Solyc12g088900.2 Solanum lycopersicum HOM05D004405 ORTHO05D005613 1.4e-62 243.8 243 54.7
CAN.G371.36 Capsicum annuum HOM05D004405 ORTHO05D005613 3.9e-62 242.3 178 64.6
MBI06_g04501_MAGBIO Magnolia biondii HOM05D004405 ORTHO05D005613 1.5e-61 240.4 184 63.6
unitig_21.g20460 Utricularia gibba HOM05D004405 ORTHO05D005613 2.0e-61 240.0 240 52.5
Peaxi162Scf00064g00017 Petunia axillaris HOM05D004405 ORTHO05D005613 2.5e-61 239.6 243 53.9
Lsat_1_v5_gn_1_20160 Lactuca sativa HOM05D004405 ORTHO05D005613 4.3e-61 238.8 244 54.9
Manes.05G171800 Manihot esculenta HOM05D004405 ORTHO05D005613 7.4e-61 238.0 230 57.4
Sc15g0006290 Simmondsia chinensis HOM05D004405 ORTHO05D005613 2.2e-60 236.5 231 55.8
Ah.01g019210 Amaranthus hybridus HOM05D004405 ORTHO05D005613 2.8e-60 236.1 204 56.9
BolSC99t61278H Brassica oleracea HOM05D004405 ORTHO05D005613 1.2e-58 230.7 226 56.2
SalBow7G1402 Salvia bowleyana HOM05D004405 ORTHO05D005613 2.6e-58 229.6 236 53.0
vmacro05293 Vaccinium macrocarpon HOM05D004405 ORTHO05D005613 5.9e-58 228.4 167 61.7
CSS0003579 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-57 226.9 163 64.4
AUR62037877 Chenopodium quinoa HOM05D004405 ORTHO05D005613 2.2e-57 226.5 232 52.6
Nn7g38185 Nelumbo nucifera HOM05D004405 ORTHO05D005613 6.5e-57 224.9 151 68.9
CSS0039327 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.5e-56 223.0 147 71.4
Zm00001eb053470 Zea mays HOM05D004405 ORTHO05D005613 7.2e-56 221.5 237 49.8
EL10Ac7g16991 Beta vulgaris HOM05D004405 ORTHO05D005613 9.4e-56 221.1 242 50.8
Os04g0418000 Oryza sativa ssp. japonica HOM05D004405 ORTHO05D005613 1.2e-55 220.7 239 50.2
Zm00001eb217160 Zea mays HOM05D004405 ORTHO05D005613 2.7e-55 219.5 238 49.6
CDE01G0147 Ceratophyllum demersum HOM05D004405 ORTHO05D005613 5.1e-54 215.3 172 60.5
SEGI_22288 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 5.1e-54 215.3 184 58.7
SEGI_20825 Sequoiadendron giganteum HOM05D004405 ORTHO05D005613 1.5e-53 213.8 172 60.5
HPP92_014066 Vanilla planifolia HOM05D004405 ORTHO05D005613 4.4e-53 212.2 173 59.5
Manes.05G171801 Manihot esculenta HOM05D004405 ORTHO05D005613 1.3e-52 210.7 226 53.5
Nitab4.5_0004184g0030 Nicotiana tabacum HOM05D004405 ORTHO05D005613 6.3e-52 208.4 223 50.7
CSS0018141 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 5.9e-50 201.8 164 61.0
AUR62019554 Chenopodium quinoa HOM05D004405 ORTHO05D005613 5.5e-48 195.3 206 48.5
Aqoxy6G01363 Aquilegia oxysepala HOM05D004405 ORTHO05D005613 9.4e-48 194.5 235 44.3
BolC6t35323H Brassica oleracea HOM05D004405 ORTHO05D005613 4.7e-47 192.2 163 59.5
CSS0001980 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 9.7e-45 184.5 132 63.6
CSS0025487 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 1.7e-41 173.7 147 61.2
FvH4_2g34710 Fragaria vesca HOM05D004405 ORTHO05D005613 1.8e-38 163.7 112 67.9
Pp3c21_1560 Physcomitrium patens HOM05D004405 ORTHO05D005613 7.7e-34 148.3 171 43.3
SGA_v2.0_scaffold7G04074 Striga asiatica HOM05D004405 ORTHO05D005613 2.9e-33 146.4 150 51.3
AagrBONN_evm.TU.Sc2ySwM_344.3923 Anthoceros agrestis HOM05D004405 ORTHO05D005613 5.0e-33 145.6 203 38.9
Mapoly0033s0094 Marchantia polymorpha HOM05D004405 ORTHO05D005613 8.5e-33 144.8 172 43.6
MD04G1229600 Malus domestica HOM05D004405 ORTHO05D005613 3.6e-31 139.4 110 56.4
SMO351G0505 Selaginella moellendorffii HOM05D004405 ORTHO05D005613 1.4e-30 137.5 192 43.2
CBR_g38490 Chara braunii HOM05D004405 ORTHO05D005613 4.8e-28 129.0 161 41.6
CSS0003400 Camellia sinensis var. sinensis HOM05D004405 ORTHO05D005613 2.1e-23 113.6 76 69.7
Lsat_1_v5_gn_2_117301 Lactuca sativa HOM05D004405 ORTHO05D005613 7.0e-19 98.6 86 59.3
PRCOL_00004317 Prasinoderma coloniale HOM05D004405 ORTHO05D005613 3.5e-18 96.3 155 37.4
Actinidia22615 Actinidia chinensis HOM05D004405 ORTHO05D005613 1.4e-14 84.3 107 46.7
Lsat_1_v5_gn_0_36860 Lactuca sativa HOM05D004405 ORTHO05D005613 1.2e-13 81.3 87 46.0
C08p09120 Brassica napus HOM05D004405 ORTHO05D033353 1.6e-07 60.8 54 48.1
BolC8t47758H Brassica oleracea HOM05D004405 ORTHO05D033353 2.8e-07 60.1 51 51.0


User provided reference genes

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