Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR080G0005 Punica granatum HOM05D006151 ORTHO05D007487 6.9e-114 414.1 221 100.0
PGR044G2378 Punica granatum HOM05D006151 ORTHO05D007487 1.7e-112 409.5 222 99.5
PGR100G0011 Punica granatum HOM05D006151 ORTHO05D007487 1.7e-112 409.5 222 99.5
Cfa018318 Carpinus fangiana HOM05D006151 ORTHO05D007487 2.1e-62 243.0 217 57.1
Actinidia04761 Actinidia chinensis HOM05D006151 ORTHO05D007487 2.4e-58 229.6 200 59.0
Dinv25871 Davidia involucrata HOM05D006151 ORTHO05D007487 4.5e-57 225.3 222 54.1
Eucgr.F04235 Eucalyptus grandis HOM05D006151 ORTHO05D007487 5.9e-57 224.9 220 55.0
CANSAT25G1414 Cannabis sativa HOM05D006151 ORTHO05D007487 5.0e-56 221.9 217 53.0
TAR628G1632 Trochodendron aralioides HOM05D006151 ORTHO05D007487 3.2e-55 219.2 218 53.2
Manes.02G180000 Manihot esculenta HOM05D006151 ORTHO05D007487 7.2e-55 218.0 222 51.8
Lj5g0026688 Lotus japonicus HOM05D006151 ORTHO05D007487 9.4e-55 217.6 226 50.4
Ciclev10002306m.g Citrus clementina HOM05D006151 ORTHO05D007487 2.1e-54 216.5 222 52.7
GSVIVG01034539001 Vitis vinifera HOM05D006151 ORTHO05D007487 2.7e-54 216.1 219 54.8
Atru.chr13.2098 Acer truncatum HOM05D006151 ORTHO05D007487 3.6e-54 215.7 222 53.2
COL.COLO4_04528 Corchorus olitorius HOM05D006151 ORTHO05D007487 3.6e-54 215.7 226 54.0
Duzib041G0750 Durio zibethinus HOM05D006151 ORTHO05D007487 1.4e-53 213.8 220 54.1
FAN20G0746 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.3e-53 213.0 227 50.7
RcHm_v2.0_Chr6g0275291 Rosa chinensis HOM05D006151 ORTHO05D007487 5.2e-53 211.8 230 50.9
FvH4_2g13650 Fragaria vesca HOM05D006151 ORTHO05D007487 8.8e-53 211.1 228 51.3
FAN27G2560 Fragaria x ananassa HOM05D006151 ORTHO05D007487 1.5e-52 210.3 228 50.9
FAN24G0867 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.0e-52 209.9 228 50.9
CSS0023884 Camellia sinensis var. sinensis HOM05D006151 ORTHO05D007487 3.4e-52 209.1 217 52.1
TAR381G1121 Trochodendron aralioides HOM05D006151 ORTHO05D007487 3.4e-52 209.1 213 53.1
Thecc.08G153600 Theobroma cacao HOM05D006151 ORTHO05D007487 5.7e-52 208.4 213 52.6
Rhsim11G0083500 Rhododendron simsii HOM05D006151 ORTHO05D007487 7.5e-52 208.0 200 57.0
Duzib116G0486 Durio zibethinus HOM05D006151 ORTHO05D007487 1.7e-51 206.8 212 53.3
FAN15G1313 Fragaria x ananassa HOM05D006151 ORTHO05D007487 2.2e-51 206.5 228 50.4
Gorai.005G078700 Gossypium raimondii HOM05D006151 ORTHO05D007487 2.8e-51 206.1 216 53.7
Nitab4.5_0001062g0090 Nicotiana tabacum HOM05D006151 ORTHO05D007487 4.8e-51 205.3 201 54.2
Potri.002G067600 Populus trichocarpa HOM05D006151 ORTHO05D007487 1.8e-50 203.4 222 49.1
Gohir.D02G069400 Gossypium hirsutum HOM05D006151 ORTHO05D007487 2.4e-50 203.0 216 53.2
Cpa.g.sc21.206 Carica papaya HOM05D006151 ORTHO05D007487 4.1e-50 202.2 229 50.2
Phvul.007G081100 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 7.0e-50 201.4 221 49.3
vmacro01457 Vaccinium macrocarpon HOM05D006151 ORTHO05D007487 1.6e-49 200.3 203 56.2
arahy.Tifrunner.gnm1.ann1.2F6CI2 Arachis hypogaea HOM05D006151 ORTHO05D007487 2.0e-49 199.9 220 51.4
CiPaw.15G015800 Carya illinoinensis HOM05D006151 ORTHO05D007487 2.0e-49 199.9 219 48.4
Hma1.2p1_0105F.1_g050630 Hydrangea macrophylla HOM05D006151 ORTHO05D007487 2.7e-49 199.5 219 51.1
Gohir.A02G063800 Gossypium hirsutum HOM05D006151 ORTHO05D007487 4.5e-49 198.7 202 54.0
Dinv41078 Davidia involucrata HOM05D006151 ORTHO05D007487 5.9e-49 198.4 218 51.4
Glyma.20G168200 Glycine max HOM05D006151 ORTHO05D007487 5.9e-49 198.4 223 49.8
Cc10_g14430 Coffea canephora HOM05D006151 ORTHO05D007487 1.0e-48 197.6 219 51.6
Sopen04g027470 Solanum pennellii HOM05D006151 ORTHO05D007487 1.7e-48 196.8 219 51.1
Solyc04g071500.4 Solanum lycopersicum HOM05D006151 ORTHO05D007487 2.2e-48 196.4 219 51.1
Nitab4.5_0009071g0020 Nicotiana tabacum HOM05D006151 ORTHO05D007487 2.9e-48 196.1 201 52.7
Peaxi162Scf00599g00048 Petunia axillaris HOM05D006151 ORTHO05D007487 3.8e-48 195.7 222 50.0
TWI34G1794 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 5.0e-48 195.3 218 49.1
CAN.G268.27 Capsicum annuum HOM05D006151 ORTHO05D007487 6.5e-48 194.9 222 48.2
VMungo0720G2232 Vigna mungo HOM05D006151 ORTHO05D007487 1.1e-47 194.1 201 51.7
MD05G1026900 Malus domestica HOM05D006151 ORTHO05D007487 1.5e-47 193.7 235 48.9
ClCG08G007050 Citrullus lanatus HOM05D006151 ORTHO05D007487 2.5e-47 193.0 213 50.2
Medtr1g098580 Medicago truncatula HOM05D006151 ORTHO05D007487 5.5e-47 191.8 210 54.3
Glyma.10G223700 Glycine max HOM05D006151 ORTHO05D007487 2.1e-46 189.9 206 51.5
PGSC0003DMG400024091 Solanum tuberosum HOM05D006151 ORTHO05D007487 8.0e-46 188.0 217 49.8
Duzib093G0584 Durio zibethinus HOM05D006151 ORTHO05D007487 1.0e-45 187.6 212 50.5
Psat6g192320 Pisum sativum HOM05D006151 ORTHO05D007487 1.0e-45 187.6 216 50.9
Prupe.8G031400 Prunus persica HOM05D006151 ORTHO05D007487 3.0e-45 186.0 232 47.4
MSTRG.1087 Avicennia marina HOM05D006151 ORTHO05D007487 4.0e-45 185.7 220 49.1
Lalb_Chr06g0161651 Lupinus albus HOM05D006151 ORTHO05D007487 6.8e-45 184.9 229 47.2
MD10G1026200 Malus domestica HOM05D006151 ORTHO05D007487 6.8e-45 184.9 228 47.4
Potri.005G192800 Populus trichocarpa HOM05D006151 ORTHO05D007487 6.8e-45 184.9 224 48.2
Sed0016357 Sechium edule HOM05D006151 ORTHO05D007487 1.5e-44 183.7 210 48.6
QL02p039028 Quercus lobata HOM05D006151 ORTHO05D007487 2.0e-44 183.3 220 47.7
MELO3C008336.2 Cucumis melo HOM05D006151 ORTHO05D007487 3.4e-44 182.6 216 47.7
Oeu046040.1 Olea europaea HOM05D006151 ORTHO05D007487 3.4e-44 182.6 212 51.4
PSO210G3290 Papaver somniferum HOM05D006151 ORTHO05D007487 3.4e-44 182.6 219 45.2
DCAR_001140 Daucus carota HOM05D006151 ORTHO05D007487 9.8e-44 181.0 216 49.1
Gohir.D05G244900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 1.7e-43 180.3 205 49.3
Nn5g28758 Nelumbo nucifera HOM05D006151 ORTHO05D007487 6.3e-43 178.3 201 47.3
THA.LOC104813720 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 6.3e-43 178.3 223 48.4
SGA_v2.0_scaffold24G10349 Striga asiatica HOM05D000219 ORTHO05D000226 2.4e-42 176.4 203 49.8
TWI60G0448 Tripterygium wilfordii HOM05D006151 ORTHO05D007487 3.1e-42 176.0 169 53.8
TPR.G17045 Trifolium pratense HOM05D006151 ORTHO05D007487 5.4e-42 175.3 215 47.9
Nn1g06074 Nelumbo nucifera HOM05D006151 ORTHO05D007487 7.0e-42 174.9 219 44.3
Migut.C00998 Erythranthe guttata HOM05D006151 ORTHO05D007487 9.2e-42 174.5 197 51.3
PSO447G0272 Papaver somniferum HOM05D006151 ORTHO05D007487 9.2e-42 174.5 219 44.3
VMungo0464G0684 Vigna mungo HOM05D006151 ORTHO05D007487 1.2e-41 174.1 219 44.3
arahy.Tifrunner.gnm1.ann1.5IW37T Arachis hypogaea HOM05D006151 ORTHO05D007487 1.6e-41 173.7 170 55.3
Gorai.009G254700 Gossypium raimondii HOM05D006151 ORTHO05D007487 2.0e-41 173.3 205 48.3
Glyma.16G166000 Glycine max HOM05D006151 ORTHO05D007487 3.8e-40 169.1 225 45.3
Gohir.A05G243900 Gossypium hirsutum HOM05D006151 ORTHO05D007487 3.8e-40 169.1 202 48.0
Manes.18G092600 Manihot esculenta HOM05D006151 ORTHO05D007487 1.5e-39 167.2 201 47.3
Aa31LG7G5240 Aethionema arabicum HOM05D006151 ORTHO05D007487 4.3e-39 165.6 170 53.5
CARHR021560 Cardamine hirsuta HOM05D006151 ORTHO05D007487 7.3e-39 164.9 221 47.5
Sp1g18760 Schrenkiella parvula HOM05D006151 ORTHO05D007487 9.5e-39 164.5 220 46.4
HanXRQChr05g0161971 Helianthus annuus HOM05D006151 ORTHO05D007487 1.2e-38 164.1 220 45.0
AT1G21090 Arabidopsis thaliana HOM05D006151 ORTHO05D007487 2.8e-38 162.9 220 47.3
Hund26694 Selenicereus undatus HOM05D006151 ORTHO05D007487 2.8e-38 162.9 223 42.2
Peaxi162Scf01294g00115 Petunia axillaris HOM05D006151 ORTHO05D007487 3.6e-38 162.5 220 45.0
Phvul.004G093600 Phaseolus vulgaris HOM05D006151 ORTHO05D007487 3.6e-38 162.5 206 48.1
Ca_10677_v3 Cicer arietinum L. HOM05D006151 ORTHO05D007487 1.0e-37 161.0 209 46.9
BcaB03g14281 Brassica carinata HOM05D006151 ORTHO05D007487 1.4e-37 160.6 221 47.1
MBI09_g40713_MAGBIO Magnolia biondii HOM05D006151 ORTHO05D007487 1.4e-37 160.6 201 45.8
Aqoxy5G02075 Aquilegia oxysepala HOM05D006151 ORTHO05D007487 1.8e-37 160.2 204 50.0
EL10Ac1g01556 Beta vulgaris HOM05D006151 ORTHO05D007487 1.8e-37 160.2 227 44.9
AUR62013592 Chenopodium quinoa HOM05D006151 ORTHO05D007487 1.8e-37 160.2 229 40.6
Nitab4.5_0002487g0030 Nicotiana tabacum HOM05D006151 ORTHO05D007487 1.8e-37 160.2 180 52.8
THA.LOC104812035 Tarenaya hassleriana HOM05D006151 ORTHO05D007487 1.8e-37 160.2 177 53.1
BcaB07g32102 Brassica carinata HOM05D006151 ORTHO05D007487 5.2e-37 158.7 220 44.5
AL1G34140 Arabidopsis lyrata HOM05D006151 ORTHO05D007487 6.8e-37 158.3 221 45.7
Carub.0001s2055 Capsella rubella HOM05D006151 ORTHO05D007487 6.8e-37 158.3 203 49.8
Thhalv10008611m.g Eutrema salsugineum HOM05D006151 ORTHO05D007487 8.9e-37 157.9 178 52.8
AUR62026702 Chenopodium quinoa HOM05D006151 ORTHO05D007487 2.6e-36 156.4 208 42.3
C05p19820 Brassica napus HOM05D006151 ORTHO05D007487 1.7e-35 153.7 222 45.0
BolC5t30681H Brassica oleracea HOM05D006151 ORTHO05D007487 1.7e-35 153.7 222 45.0
BraA06t24819Z Brassica rapa HOM05D006151 ORTHO05D007487 1.7e-35 153.7 222 45.0
CsaV3_6G005160 Cucumis sativus L. HOM05D006151 ORTHO05D007487 3.7e-35 152.5 214 44.9
A06p17160 Brassica napus HOM05D006151 ORTHO05D007487 4.9e-35 152.1 221 43.0
Lsat_1_v5_gn_6_100560 Lactuca sativa HOM05D006151 ORTHO05D007487 2.4e-34 149.8 260 37.3
A07p15290 Brassica napus HOM05D006151 ORTHO05D007487 1.3e-32 144.1 175 50.3
BraA07t29267Z Brassica rapa HOM05D006151 ORTHO05D007487 1.3e-32 144.1 175 50.3
BcaC06g34887 Brassica carinata HOM05D006151 ORTHO05D007487 3.3e-31 139.4 175 49.1
C07p22470 Brassica napus HOM05D006151 ORTHO05D007487 3.3e-31 139.4 175 49.1
BolC7t42748H Brassica oleracea HOM05D006151 ORTHO05D007487 3.3e-31 139.4 175 49.1
ECA246G2194 Erigeron canadensis HOM05D006151 ORTHO05D007487 3.3e-31 139.4 259 37.1
Actinidia29533 Actinidia chinensis HOM05D006151 ORTHO05D007487 5.6e-31 138.7 155 51.6
Hund17438 Selenicereus undatus HOM05D006151 ORTHO05D007487 9.5e-31 137.9 187 41.7
Sed0009804 Sechium edule HOM05D006151 ORTHO05D007487 2.3e-29 133.3 218 39.4
unitig_748.g7705 Utricularia gibba HOM05D006151 ORTHO05D007487 3.4e-28 129.4 226 39.4
BcaC05g26017 Brassica carinata HOM05D006151 ORTHO05D007487 8.3e-27 124.8 201 43.3
Nitab4.5_0010143g0010 Nicotiana tabacum HOM05D006151 ORTHO05D007487 8.1e-22 108.2 197 40.6
Ah.05g167920 Amaranthus hybridus HOM05D006151 ORTHO05D007487 1.2e-20 104.4 192 35.4
Lj7C374T8 Lonicera japonica HOM05D006151 ORTHO05D007487 5.8e-20 102.1 154 42.9
HPP92_004418 Vanilla planifolia HOM05D006151 ORTHO05D007487 1.2e-14 84.3 215 35.3
CDE08G0602 Ceratophyllum demersum HOM05D006151 ORTHO05D007487 4.7e-14 82.4 190 33.7
Nn1g02131 Nelumbo nucifera HOM05D006151 ORTHO05D007487 1.1e-10 71.2 169 32.5
Peaxi162Scf00476g00615 Petunia axillaris HOM05D002901 ORTHO05D003183 5.4e-10 68.9 93 45.2
Sc02g0004030 Simmondsia chinensis HOM05D006151 ORTHO05D007487 1.1e-07 61.2 131 36.6
GSVIVG01026618001 Vitis vinifera HOM05D006151 ORTHO05D007487 4.3e-07 59.3 110 36.4


User provided reference genes

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