Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 2.0e-65 252.3 126 100.0
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 9.8e-65 250.0 126 99.2
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 1.7e-64 249.2 126 98.4
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 1.7e-64 249.2 126 98.4
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 8.3e-64 246.9 126 97.6
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 5.4e-63 244.2 126 96.8
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 5.4e-63 244.2 126 96.8
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 1.3e-61 239.6 124 96.0
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 4.2e-60 234.6 126 94.4
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 5.6e-60 234.2 125 92.8
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 9.5e-60 233.4 126 93.7
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 1.0e-58 229.9 126 92.9
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 3.0e-58 228.4 126 90.5
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 5.2e-58 227.6 126 89.7
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 3.4e-57 224.9 126 88.9
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 4.9e-56 221.1 126 90.5
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 9.2e-55 216.9 126 87.3
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 1.6e-54 216.1 126 84.9
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 3.5e-54 214.9 121 87.6
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 4.6e-54 214.5 121 87.6
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 1.7e-53 212.6 121 87.6
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 2.9e-53 211.8 121 87.6
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 2.9e-53 211.8 121 87.6
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 2.9e-53 211.8 126 84.1
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 8.6e-53 210.3 121 86.8
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 1.1e-52 209.9 120 87.5
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 1.5e-52 209.5 126 81.7
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 1.5e-52 209.5 120 86.7
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 1.5e-52 209.5 120 86.7
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 1.5e-52 209.5 120 86.7
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 1.9e-52 209.1 110 94.5
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 2.5e-52 208.8 118 87.3
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 2.5e-52 208.8 118 87.3
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 4.3e-52 208.0 118 86.4
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 4.3e-52 208.0 126 83.3
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 4.3e-52 208.0 126 83.3
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 5.6e-52 207.6 126 82.5
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 5.6e-52 207.6 126 82.5
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 5.6e-52 207.6 121 85.1
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 5.6e-52 207.6 126 83.3
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 5.6e-52 207.6 126 83.3
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 5.6e-52 207.6 120 85.8
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 7.3e-52 207.2 121 84.3
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 7.3e-52 207.2 120 85.8
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 9.5e-52 206.8 126 81.7
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 1.2e-51 206.5 126 81.7
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 1.6e-51 206.1 126 83.3
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 2.1e-51 205.7 126 82.5
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 2.1e-51 205.7 121 84.3
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 2.1e-51 205.7 121 84.3
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 2.1e-51 205.7 118 86.4
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 2.1e-51 205.7 121 84.3
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 2.1e-51 205.7 126 81.7
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 2.8e-51 205.3 126 82.5
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 3.6e-51 204.9 121 83.5
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 3.6e-51 204.9 126 81.0
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 3.6e-51 204.9 125 81.6
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 8.0e-51 203.8 119 84.9
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 8.0e-51 203.8 126 81.0
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 8.0e-51 203.8 126 81.0
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 8.0e-51 203.8 126 81.0
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 1.0e-50 203.4 121 82.6
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 1.0e-50 203.4 121 82.6
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 1.0e-50 203.4 121 82.6
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 1.0e-50 203.4 121 82.6
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 1.0e-50 203.4 123 82.1
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 1.0e-50 203.4 123 82.1
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 1.4e-50 203.0 126 81.0
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 1.4e-50 203.0 126 81.0
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 1.4e-50 203.0 123 81.3
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 83.5
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 82.6
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 82.6
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 82.6
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 82.6
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 1.8e-50 202.6 121 83.5
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 3.1e-50 201.8 118 84.7
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 4.0e-50 201.4 121 82.6
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 4.0e-50 201.4 126 80.2
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 4.0e-50 201.4 126 81.0
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 5.2e-50 201.1 126 81.0
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 6.8e-50 200.7 121 82.6
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 6.8e-50 200.7 121 81.8
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 6.8e-50 200.7 121 82.6
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 8.9e-50 200.3 123 80.5
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 1.5e-49 199.5 123 80.5
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 1.5e-49 199.5 126 81.7
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 2.0e-49 199.1 123 80.5
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 3.4e-49 198.4 126 81.7
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 3.4e-49 198.4 128 79.7
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 7.5e-49 197.2 118 84.7
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 7.5e-49 197.2 126 77.8
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 9.8e-49 196.8 120 83.3
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 1.3e-48 196.4 118 82.2
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 1.3e-48 196.4 118 83.1
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 1.3e-48 196.4 124 79.8
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 1.7e-48 196.1 123 82.1
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 2.2e-48 195.7 121 81.8
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 2.2e-48 195.7 118 83.9
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 2.2e-48 195.7 118 83.9
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 2.2e-48 195.7 118 83.1
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 2.2e-48 195.7 123 79.7
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 2.9e-48 195.3 126 80.2
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 3.7e-48 194.9 123 78.0
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 4.9e-48 194.5 126 80.2
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 6.4e-48 194.1 123 78.9
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 6.4e-48 194.1 121 81.0
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 6.4e-48 194.1 126 80.2
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 6.4e-48 194.1 123 80.5
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.1e-47 193.4 123 78.9
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 1.1e-47 193.4 120 80.0
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 1.1e-47 193.4 112 85.7
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 1.4e-47 193.0 126 79.4
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 1.4e-47 193.0 112 85.7
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 1.4e-47 193.0 123 79.7
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 1.9e-47 192.6 123 80.5
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 1.9e-47 192.6 123 78.0
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.9e-47 192.6 123 78.0
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 1.9e-47 192.6 118 79.7
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 1.9e-47 192.6 126 77.8
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 1.9e-47 192.6 118 81.4
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 3.2e-47 191.8 118 79.7
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 4.1e-47 191.4 118 80.5
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 5.4e-47 191.0 118 82.2
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 7.0e-47 190.7 123 78.0
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.2e-46 189.9 123 77.2
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 1.6e-46 189.5 123 79.7
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 6.0e-46 187.6 110 85.5
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 3.0e-45 185.3 121 78.5
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 5.0e-45 184.5 121 78.5
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 3.3e-44 181.8 121 77.7
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 1.8e-42 176.0 123 74.8
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 8.3e-40 167.2 106 78.3
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 1.4e-39 166.4 106 76.4
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 1.6e-35 152.9 121 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 2.1e-35 152.5 102 73.5
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 2.8e-35 152.1 115 65.2
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 1.4e-34 149.8 141 61.0
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 4.0e-34 148.3 85 88.2
MCO12G023 Micromonas commoda HOM05D004456 ORTHO05D005287 7.1e-31 137.5 104 65.4
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 1.3e-29 133.3 103 66.0
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 6.6e-29 131.0 100 65.0
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 1.9e-23 112.8 106 58.5
Cpa.g.sc4.119 Carica papaya HOM05D004456 ORTHO05D005287 2.4e-23 112.5 65 86.2
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 4.2e-23 111.7 67 79.1
Cre01.g052350 Chlamydomonas reinhardtii HOM05D004456 ORTHO05D005287 5.4e-23 111.3 100 57.0
Nn1g08913 Nelumbo nucifera HOM05D004456 ORTHO05D005287 7.1e-23 110.9 61 88.5
SHI24418 Sapria himalayana HOM05D004456 ORTHO05D005287 7.8e-22 107.5 64 84.4
CBR_g49054 Chara braunii HOM05D004456 ORTHO05D005287 3.0e-21 105.5 63 79.4
QL06p000079 Quercus lobata HOM05D004456 ORTHO05D005287 8.7e-21 104.0 63 81.0
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 1.5e-20 103.2 82 64.6
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.3e-20 100.9 95 53.7
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.3e-20 100.9 95 53.7
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 1.6e-19 99.8 116 49.1
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 3.1e-18 95.5 59 78.0
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 4.6e-14 81.6 59 71.2
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 2.3e-13 79.3 53 71.7
EL10Ac8g19693 Beta vulgaris HOM05D004456 ORTHO05D005287 2.0e-09 66.2 39 82.1
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 2.6e-09 65.9 50 62.0
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 2.7e-06 55.8 89 34.8
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 2.7e-06 55.8 89 34.8


User provided reference genes

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