Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR073G0001 Punica granatum HOM05D004456 ORTHO05D005287 2.6e-65 251.9 126 100.0
PGR073G0004 Punica granatum HOM05D004456 ORTHO05D005287 9.8e-65 250.0 126 99.2
PGR073G0005 Punica granatum HOM05D004456 ORTHO05D005287 9.8e-65 250.0 126 99.2
PGR142G1158 Punica granatum HOM05D004456 ORTHO05D005287 2.8e-64 248.4 126 98.4
PGR073G0006 Punica granatum HOM05D004456 ORTHO05D005287 1.1e-63 246.5 126 97.6
PGR087G0002 Punica granatum HOM05D004456 ORTHO05D005287 3.1e-63 245.0 126 97.6
PGR087G0004 Punica granatum HOM05D004456 ORTHO05D005287 3.1e-63 245.0 126 97.6
PGR142G0123 Punica granatum HOM05D004456 ORTHO05D005287 1.2e-62 243.0 125 96.8
PGR142G2466 Punica granatum HOM05D004456 ORTHO05D005287 2.5e-60 235.3 126 95.2
PGR142G0749 Punica granatum HOM05D004456 ORTHO05D005287 3.3e-60 235.0 125 93.6
PGR142G0549 Punica granatum HOM05D004456 ORTHO05D005287 5.6e-60 234.2 126 94.4
PGR142G2683 Punica granatum HOM05D004456 ORTHO05D005287 6.1e-59 230.7 126 93.7
PGR142G0707 Punica granatum HOM05D004456 ORTHO05D005287 1.8e-58 229.2 126 91.3
PGR142G2513 Punica granatum HOM05D004456 ORTHO05D005287 3.0e-58 228.4 126 90.5
PGR142G2293 Punica granatum HOM05D004456 ORTHO05D005287 2.0e-57 225.7 126 89.7
PGR142G2495 Punica granatum HOM05D004456 ORTHO05D005287 2.9e-56 221.9 126 91.3
Eucgr.B03760 Eucalyptus grandis HOM05D004456 ORTHO05D005287 5.4e-55 217.6 126 88.1
Ciclev10029584m.g Citrus clementina HOM05D004456 ORTHO05D005287 9.2e-55 216.9 126 85.7
Sabra17G0098500 Salix brachista HOM05D004456 ORTHO05D005287 2.0e-54 215.7 121 88.4
Potri.017G119300 Populus trichocarpa HOM05D004456 ORTHO05D005287 2.7e-54 215.3 121 88.4
PGR142G3851 Punica granatum HOM05D004456 ORTHO05D005287 1.3e-53 213.0 110 96.4
arahy.Tifrunner.gnm1.ann1.PTU9AS Arachis hypogaea HOM05D004456 ORTHO05D005287 1.7e-53 212.6 121 88.4
arahy.Tifrunner.gnm1.ann1.VAHF8H Arachis hypogaea HOM05D004456 ORTHO05D005287 1.7e-53 212.6 121 88.4
Manes.03G095700 Manihot esculenta HOM05D004456 ORTHO05D005287 1.7e-53 212.6 126 84.9
Phvul.009G196700 Phaseolus vulgaris HOM05D004456 ORTHO05D005287 6.6e-53 210.7 120 88.3
Atru.chr8.947 Acer truncatum HOM05D004456 ORTHO05D005287 8.6e-53 210.3 126 82.5
Glyma.02G272000 Glycine max HOM05D004456 ORTHO05D005287 8.6e-53 210.3 120 87.5
Medtr0027s0250 Medicago truncatula HOM05D004456 ORTHO05D005287 8.6e-53 210.3 120 87.5
Medtr5g087380 Medicago truncatula HOM05D004456 ORTHO05D005287 8.6e-53 210.3 120 87.5
ClCG02G018700 Citrullus lanatus HOM05D004456 ORTHO05D005287 1.5e-52 209.5 118 88.1
MELO3C019631.2 Cucumis melo HOM05D004456 ORTHO05D005287 1.5e-52 209.5 118 88.1
Lalb_Chr04g0249811 Lupinus albus HOM05D004456 ORTHO05D005287 1.9e-52 209.1 121 86.8
CsaV3_6G013470 Cucumis sativus L. HOM05D004456 ORTHO05D005287 2.5e-52 208.8 118 87.3
Ca_06131_v3 Cicer arietinum L. HOM05D004456 ORTHO05D005287 3.3e-52 208.4 121 86.0
Gohir.D11G338800 Gossypium hirsutum HOM05D004456 ORTHO05D005287 3.3e-52 208.4 126 84.1
Gorai.007G368500 Gossypium raimondii HOM05D004456 ORTHO05D005287 3.3e-52 208.4 126 84.1
VMungo1309G1322 Vigna mungo HOM05D004456 ORTHO05D005287 3.3e-52 208.4 120 86.7
TPR.G29918 Trifolium pratense HOM05D004456 ORTHO05D005287 4.3e-52 208.0 120 86.7
Thecc.06G049600 Theobroma cacao HOM05D004456 ORTHO05D005287 5.6e-52 207.6 126 82.5
Sed0012483 Sechium edule HOM05D004456 ORTHO05D005287 7.3e-52 207.2 126 82.5
Lalb_Chr10g0105771 Lupinus albus HOM05D004456 ORTHO05D005287 9.5e-52 206.8 121 86.0
Prupe.1G563700 Prunus persica HOM05D004456 ORTHO05D005287 9.5e-52 206.8 126 83.3
Prupe.4G128400 Prunus persica HOM05D004456 ORTHO05D005287 9.5e-52 206.8 126 83.3
CANSAT35G0656 Cannabis sativa HOM05D004456 ORTHO05D005287 1.2e-51 206.5 126 82.5
CANSAT56G2838 Cannabis sativa HOM05D004456 ORTHO05D005287 1.2e-51 206.5 126 82.5
COL.COLO4_26811 Corchorus olitorius HOM05D004456 ORTHO05D005287 1.2e-51 206.5 126 83.3
Sed0010742 Sechium edule HOM05D004456 ORTHO05D005287 1.2e-51 206.5 118 87.3
TAR374G0177 Trochodendron aralioides HOM05D004456 ORTHO05D005287 1.2e-51 206.5 126 82.5
CiPaw.01G092700 Carya illinoinensis HOM05D004456 ORTHO05D005287 1.6e-51 206.1 126 83.3
Duzib235G0097 Durio zibethinus HOM05D004456 ORTHO05D005287 2.1e-51 205.7 126 81.7
LjContig00564g0013918 Lotus japonicus HOM05D004456 ORTHO05D005287 2.1e-51 205.7 121 83.5
TAR622G1262 Trochodendron aralioides HOM05D004456 ORTHO05D005287 2.1e-51 205.7 125 82.4
Haze_16244 Corylus avellana HOM05D004456 ORTHO05D005287 3.6e-51 204.9 126 83.3
Dinv05126 Davidia involucrata HOM05D004456 ORTHO05D005287 4.7e-51 204.5 126 81.7
Gohir.A11G319600 Gossypium hirsutum HOM05D004456 ORTHO05D005287 4.7e-51 204.5 126 81.7
THA.LOC104812342 Tarenaya hassleriana HOM05D004456 ORTHO05D005287 6.2e-51 204.1 121 83.5
Aqoxy3G00192 Aquilegia oxysepala HOM05D004456 ORTHO05D005287 8.0e-51 203.8 126 81.7
Aa31LG7G1200 Aethionema arabicum HOM05D004456 ORTHO05D005287 1.0e-50 203.4 121 82.6
HanXRQChr03g0087831 Helianthus annuus HOM05D004456 ORTHO05D005287 1.8e-50 202.6 126 81.0
Solyc02g069840.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 1.8e-50 202.6 123 82.1
Sopen02g019000 Solanum pennellii HOM05D004456 ORTHO05D005287 1.8e-50 202.6 123 82.1
PGSC0003DMG400021190 Solanum tuberosum HOM05D004456 ORTHO05D005287 2.3e-50 202.2 123 81.3
BcaC07g38811 Brassica carinata HOM05D004456 ORTHO05D005287 3.1e-50 201.8 121 81.8
A08p31300 Brassica napus HOM05D004456 ORTHO05D005287 3.1e-50 201.8 121 81.8
C08p17530 Brassica napus HOM05D004456 ORTHO05D005287 3.1e-50 201.8 121 81.8
BolC8t49379H Brassica oleracea HOM05D004456 ORTHO05D005287 3.1e-50 201.8 121 81.8
ECA246G0212 Erigeron canadensis HOM05D004456 ORTHO05D005287 3.1e-50 201.8 126 81.0
A06p12700 Brassica napus HOM05D004456 ORTHO05D005287 5.2e-50 201.1 121 81.8
C05p15000 Brassica napus HOM05D004456 ORTHO05D005287 5.2e-50 201.1 121 81.8
BolC5t30215H Brassica oleracea HOM05D004456 ORTHO05D005287 5.2e-50 201.1 121 81.8
BraA06t24430Z Brassica rapa HOM05D004456 ORTHO05D005287 5.2e-50 201.1 121 81.8
Oeu041103.1 Olea europaea HOM05D004456 ORTHO05D005287 6.8e-50 200.7 126 82.5
TWI81G0537 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 6.8e-50 200.7 118 84.7
DCAR_003856 Daucus carota HOM05D004456 ORTHO05D005287 8.9e-50 200.3 126 80.2
Thhalv10009114m.g Eutrema salsugineum HOM05D004456 ORTHO05D005287 1.2e-49 199.9 121 81.8
MD10G1216300 Malus domestica HOM05D004456 ORTHO05D005287 1.2e-49 199.9 126 81.0
Sp1g14890 Schrenkiella parvula HOM05D004456 ORTHO05D005287 1.2e-49 199.9 121 81.8
HanXRQChr17g0543051 Helianthus annuus HOM05D004456 ORTHO05D005287 1.5e-49 199.5 123 80.5
Oeu015180.1 Olea europaea HOM05D004456 ORTHO05D005287 1.5e-49 199.5 126 82.5
BcaB03g13034 Brassica carinata HOM05D004456 ORTHO05D005287 2.0e-49 199.1 121 81.8
BraA08t35053Z Brassica rapa HOM05D004456 ORTHO05D005287 2.0e-49 199.1 121 81.0
Nitab4.5_0004615g0060 Nicotiana tabacum HOM05D004456 ORTHO05D005287 2.6e-49 198.7 123 80.5
BcaB02g06679 Brassica carinata HOM05D004456 ORTHO05D005287 3.4e-49 198.4 119 82.4
CSS0000388 Camellia sinensis var. sinensis HOM05D004456 ORTHO05D005287 3.4e-49 198.4 118 85.6
Nitab4.5_0001225g0030 Nicotiana tabacum HOM05D004456 ORTHO05D005287 3.4e-49 198.4 123 80.5
Hma1.2p1_0333F.1_g128240 Hydrangea macrophylla HOM05D004456 ORTHO05D005287 4.4e-49 198.0 126 79.4
Psat2g023600 Pisum sativum HOM05D004456 ORTHO05D005287 5.8e-49 197.6 120 84.2
Actinidia13485 Actinidia chinensis HOM05D004456 ORTHO05D005287 7.5e-49 197.2 118 83.1
CARHR017200 Cardamine hirsuta HOM05D004456 ORTHO05D005287 7.5e-49 197.2 121 81.0
TWI60G0757 Tripterygium wilfordii HOM05D004456 ORTHO05D005287 7.5e-49 197.2 128 79.7
AT1G16740 Arabidopsis thaliana HOM05D004456 ORTHO05D005287 9.8e-49 196.8 121 81.0
Carub.0001s1648 Capsella rubella HOM05D004456 ORTHO05D005287 9.8e-49 196.8 121 81.0
CDE04G1757 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 9.8e-49 196.8 118 84.7
CDE08G1311 Ceratophyllum demersum HOM05D004456 ORTHO05D005287 9.8e-49 196.8 118 84.7
GSVIVG01015827001 Vitis vinifera HOM05D004456 ORTHO05D005287 9.8e-49 196.8 123 80.5
Lsat_1_v5_gn_4_69821 Lactuca sativa HOM05D004456 ORTHO05D005287 1.7e-48 196.1 126 77.8
AL1G28910 Arabidopsis lyrata HOM05D004456 ORTHO05D005287 2.2e-48 195.7 121 80.2
CAN.G79.42 Capsicum annuum HOM05D004456 ORTHO05D005287 2.2e-48 195.7 124 79.8
MSTRG.14797 Avicennia marina HOM05D004456 ORTHO05D005287 2.9e-48 195.3 118 83.1
Cc09_g08010 Coffea canephora HOM05D004456 ORTHO05D005287 2.9e-48 195.3 123 82.1
Hund17691 Selenicereus undatus HOM05D004456 ORTHO05D005287 2.9e-48 195.3 121 81.8
SGA_v2.0_scaffold223G42863 Striga asiatica HOM05D004456 ORTHO05D005287 2.9e-48 195.3 126 81.0
MBI03_g42617_MAGBIO Magnolia biondii HOM05D004456 ORTHO05D005287 4.9e-48 194.5 126 80.2
SalBow7G3040 Salvia bowleyana HOM05D004456 ORTHO05D005287 4.9e-48 194.5 118 83.1
Lsat_1_v5_gn_1_42081 Lactuca sativa HOM05D004456 ORTHO05D005287 6.4e-48 194.1 123 78.0
vmacro03444 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 6.4e-48 194.1 120 80.8
Zm00001eb353650 Zea mays HOM05D004456 ORTHO05D005287 6.4e-48 194.1 112 86.6
ATR0618G343 Amborella trichopoda HOM05D004456 ORTHO05D005287 8.3e-48 193.7 121 81.8
Migut.M01926 Erythranthe guttata HOM05D004456 ORTHO05D005287 8.3e-48 193.7 126 80.2
FAN25G2185 Fragaria x ananassa HOM05D004456 ORTHO05D005287 8.3e-48 193.7 123 79.7
Rhsim05G0148000 Rhododendron simsii HOM05D004456 ORTHO05D005287 8.3e-48 193.7 123 80.5
Ah.06g192000 Amaranthus hybridus HOM05D004456 ORTHO05D005287 1.1e-47 193.4 123 81.3
RcHm_v2.0_Chr5g0023421 Rosa chinensis HOM05D004456 ORTHO05D005287 1.1e-47 193.4 126 78.6
FvH4_3g14110 Fragaria vesca HOM05D004456 ORTHO05D005287 1.4e-47 193.0 123 78.9
FAN11G1980 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.4e-47 193.0 123 78.9
FAN16G3308 Fragaria x ananassa HOM05D004456 ORTHO05D005287 1.4e-47 193.0 123 78.9
Migut.M01892 Erythranthe guttata HOM05D004456 ORTHO05D005287 2.4e-47 192.2 126 79.4
HPP92_025894 Vanilla planifolia HOM05D004456 ORTHO05D005287 2.4e-47 192.2 123 80.5
Os05g0528200 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 3.2e-47 191.8 112 85.7
vmacro03391 Vaccinium macrocarpon HOM05D004456 ORTHO05D005287 4.1e-47 191.4 123 78.9
PSO384G3508 Papaver somniferum HOM05D004456 ORTHO05D005287 7.0e-47 190.7 118 79.7
Sc17g0004630 Simmondsia chinensis HOM05D004456 ORTHO05D005287 7.0e-47 190.7 123 80.5
unitig_37.g12076 Utricularia gibba HOM05D004456 ORTHO05D005287 7.0e-47 190.7 118 81.4
FAN21G1444 Fragaria x ananassa HOM05D004456 ORTHO05D005287 9.2e-47 190.3 123 78.0
Os01g0734100 Oryza sativa ssp. japonica HOM05D004456 ORTHO05D005287 9.2e-47 190.3 118 82.2
unitig_92.g28171 Utricularia gibba HOM05D004456 ORTHO05D005287 9.2e-47 190.3 118 80.5
PSO339G5129 Papaver somniferum HOM05D004456 ORTHO05D005287 1.2e-46 189.9 118 79.7
EL10Ac1g00574 Beta vulgaris HOM05D004456 ORTHO05D005287 3.5e-46 188.3 110 86.4
AUR62005032 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.3e-45 186.4 121 79.3
EL10Ac4g09241 Beta vulgaris HOM05D004456 ORTHO05D005287 3.0e-45 185.3 121 79.3
AUR62000936 Chenopodium quinoa HOM05D004456 ORTHO05D005287 1.5e-44 183.0 121 78.5
Nn7g36646 Nelumbo nucifera HOM05D004456 ORTHO05D005287 8.1e-43 177.2 123 75.6
Pp3c20_1830 Physcomitrium patens HOM05D004456 ORTHO05D005287 2.4e-39 165.6 106 78.3
Mapoly0002s0127 Marchantia polymorpha HOM05D004456 ORTHO05D005287 3.2e-39 165.2 106 76.4
EL10Ac9g22335 Beta vulgaris HOM05D004456 ORTHO05D005287 9.5e-36 153.7 121 69.4
SMO358G0062 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 3.6e-35 151.8 115 66.1
AagrBONN_evm.TU.Sc2ySwM_228.5758 Anthoceros agrestis HOM05D004456 ORTHO05D005287 6.2e-35 151.0 103 72.8
Peaxi162Scf00267g00035 Petunia axillaris HOM05D004456 ORTHO05D005287 2.3e-34 149.1 141 61.0
Nitab4.5_0008405g0010 Nicotiana tabacum HOM05D004456 ORTHO05D005287 5.2e-34 147.9 85 88.2
MCO12G023 Micromonas commoda HOM05D004456 ORTHO05D005287 3.2e-31 138.7 100 69.0
AagrBONN_evm.TU.Sc2ySwM_368.929 Anthoceros agrestis HOM05D004456 ORTHO05D005287 1.0e-29 133.7 103 66.0
PRCOL_00003603 Prasinoderma coloniale HOM05D004456 ORTHO05D005287 1.5e-28 129.8 100 65.0
MD07G1169200 Malus domestica HOM05D004456 ORTHO05D005287 4.9e-24 114.8 106 59.4
Zm00001eb154030 Zea mays HOM05D004456 ORTHO05D005287 2.4e-23 112.5 67 79.1
Cpa.g.sc4.119 Carica papaya HOM05D004456 ORTHO05D005287 2.1e-22 109.4 65 84.6
Cre01.g052350 Chlamydomonas reinhardtii HOM05D004456 ORTHO05D005287 2.7e-22 109.0 104 54.8
Nn1g08913 Nelumbo nucifera HOM05D004456 ORTHO05D005287 6.0e-22 107.8 61 86.9
QL06p000082 Quercus lobata HOM05D004456 ORTHO05D005287 1.3e-21 106.7 82 67.1
SHI24418 Sapria himalayana HOM05D004456 ORTHO05D005287 6.6e-21 104.4 64 82.8
CBR_g49054 Chara braunii HOM05D004456 ORTHO05D005287 1.9e-20 102.8 63 77.8
QL06p000079 Quercus lobata HOM05D004456 ORTHO05D005287 1.9e-20 102.8 63 81.0
SMO244G0037 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.3e-20 100.9 95 53.7
SMO281G0018 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 7.3e-20 100.9 95 53.7
SMO198G0083 Selaginella moellendorffii HOM05D004456 ORTHO05D005287 9.6e-20 100.5 116 47.4
Potri.004G095475 Populus trichocarpa HOM05D004456 ORTHO05D005287 2.1e-19 99.4 59 81.4
EL10Ac8g19692 Beta vulgaris HOM05D004456 ORTHO05D005287 2.4e-15 85.9 59 74.6
SHI24419 Sapria himalayana HOM05D004456 ORTHO05D005287 6.0e-14 81.3 53 73.6
Solyc09g055460.3 Solanum lycopersicum HOM05D004456 ORTHO05D005287 6.9e-10 67.8 50 64.0
EL10Ac8g19693 Beta vulgaris HOM05D004456 ORTHO05D005287 1.7e-08 63.2 39 79.5
Sed0026344 Sechium edule HOM05D007792 ORTHO05D009931 2.7e-06 55.8 90 34.4
Sed0027103 Sechium edule HOM05D007792 ORTHO05D009931 2.7e-06 55.8 90 34.4


User provided reference genes

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