Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 6.5e-179 630.6 309 100.0
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 3.2e-178 628.2 309 99.7
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 1.2e-140 503.4 309 80.3
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.6e-140 503.1 307 79.5
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 3.9e-139 498.4 309 79.6
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 1.1e-138 496.9 309 79.9
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 2.5e-138 495.7 310 77.7
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 3.3e-138 495.4 309 77.3
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 6.2e-137 491.1 309 77.7
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 8.1e-137 490.7 309 77.7
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.4e-136 490.0 310 78.4
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.4e-136 490.0 310 78.4
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.3e-136 489.2 309 77.7
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 2.3e-136 489.2 309 76.7
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 3.1e-136 488.8 309 77.0
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 4.0e-136 488.4 308 77.3
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 6.8e-136 487.6 308 76.6
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.2e-135 486.9 310 77.1
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 1.5e-135 486.5 309 77.0
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.6e-135 485.7 311 77.5
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 3.4e-135 485.3 311 76.5
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 3.4e-135 485.3 309 76.7
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 4.4e-135 485.0 309 77.3
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 5.8e-135 484.6 311 76.8
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.6e-135 484.2 305 78.0
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.6e-135 484.2 310 76.5
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 2.2e-134 482.6 310 76.5
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.2e-134 482.6 309 77.7
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 2.9e-134 482.3 311 77.5
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-134 482.3 309 77.7
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.9e-134 482.3 309 77.7
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 4.9e-134 481.5 309 77.3
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 8.3e-134 480.7 310 76.1
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.4e-133 479.9 310 76.5
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.4e-133 479.9 309 77.0
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.4e-133 479.9 311 76.5
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.9e-133 479.6 310 76.1
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 4.1e-133 478.4 310 76.5
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 5.4e-133 478.0 312 75.0
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 5.4e-133 478.0 314 74.8
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.6e-132 476.5 306 76.1
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 1.6e-132 476.5 311 75.9
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.7e-132 475.7 309 76.1
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 2.7e-132 475.7 310 75.8
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 3.5e-132 475.3 304 76.6
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 6.0e-132 474.6 309 76.4
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 7.8e-132 474.2 310 75.5
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 7.8e-132 474.2 329 72.9
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.3e-131 473.4 311 74.0
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 2.3e-131 472.6 308 75.6
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 2.3e-131 472.6 310 75.5
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.0e-131 472.2 307 75.2
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 3.0e-131 472.2 310 73.5
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 3.0e-131 472.2 310 74.8
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 3.9e-131 471.9 311 74.3
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 5.1e-131 471.5 311 73.6
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 5.1e-131 471.5 312 75.6
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 8.6e-131 470.7 310 74.8
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 8.6e-131 470.7 307 73.9
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 1.5e-130 469.9 311 74.0
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.5e-130 469.9 315 73.3
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 2.5e-130 469.2 311 75.2
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.5e-130 469.2 312 75.3
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 2.5e-130 469.2 310 75.8
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 7.3e-130 467.6 311 74.6
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 9.6e-130 467.2 307 74.3
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 9.6e-130 467.2 310 75.5
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 2.1e-129 466.1 315 73.0
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 2.8e-129 465.7 320 72.2
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 3.6e-129 465.3 310 73.9
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 4.7e-129 464.9 310 75.2
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 8.1e-129 464.2 310 74.5
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 1.1e-128 463.8 310 74.2
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.4e-128 463.4 310 72.6
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 1.4e-128 463.4 307 73.9
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 3.1e-128 462.2 309 73.5
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 1.2e-127 460.3 321 71.0
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.2e-127 460.3 311 73.3
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.5e-127 459.9 320 70.9
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 1.5e-127 459.9 308 72.4
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 2.6e-127 459.1 319 70.5
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 2.6e-127 459.1 318 70.8
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 3.4e-127 458.8 332 69.9
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 7.6e-127 457.6 307 73.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.6e-127 457.6 313 73.2
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 1.3e-126 456.8 310 71.9
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 2.2e-126 456.1 312 73.4
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.4e-125 453.4 319 70.8
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 4.6e-124 448.4 321 69.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 1.3e-123 446.8 315 69.5
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 2.3e-123 446.0 300 73.7
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 3.0e-123 445.7 311 70.7
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.1e-122 443.7 321 68.2
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 1.9e-122 443.0 321 68.5
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 2.5e-122 442.6 326 68.1
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 7.3e-122 441.0 280 76.4
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 9.6e-122 440.7 280 77.9
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.6e-121 439.9 321 68.8
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 2.8e-121 439.1 308 71.1
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.1e-120 437.2 310 71.9
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 4.4e-119 431.8 247 83.8
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 7.6e-119 431.0 333 68.2
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.2e-116 423.7 251 81.7
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 4.6e-116 421.8 324 66.4
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.3e-114 415.2 251 80.5
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 2.8e-113 412.5 323 65.0
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 8.1e-113 411.0 305 68.5
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 8.1e-113 411.0 321 63.6
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.8e-112 409.8 261 75.5
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 2.6e-111 406.0 309 66.7
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-108 397.1 306 65.4
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.8e-104 383.3 221 84.2
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 1.4e-101 373.6 229 76.9
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.5e-101 372.9 308 63.0
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 2.7e-100 369.4 310 63.9
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 2.7e-100 369.4 332 57.8
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 7.9e-100 367.9 307 61.9
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.3e-99 367.1 307 61.6
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 1.5e-98 363.6 306 60.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.5e-98 363.6 336 54.8
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 3.3e-98 362.5 231 74.9
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 5.0e-86 322.0 250 62.0
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.4e-85 320.5 222 72.5
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 3.2e-85 319.3 204 77.0
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 2.5e-82 309.7 329 52.3
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 4.7e-76 288.9 315 51.1
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 4.7e-76 288.9 207 69.1
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 2.6e-74 283.1 238 58.8
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.8e-72 276.9 162 82.7
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 2.1e-68 263.5 156 82.7
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 1.1e-66 257.7 346 43.9
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 2.0e-66 256.9 171 76.6
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 2.6e-66 256.5 169 72.8
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 9.1e-64 248.1 150 80.0
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 4.0e-59 232.6 161 69.6
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.1e-56 221.5 134 79.9
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.0e-51 208.0 287 42.5
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 1.7e-49 200.7 133 75.9
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-48 196.4 112 84.8
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-47 193.0 121 76.0
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.9e-46 189.9 121 75.2
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.8e-46 189.5 121 75.2
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.8e-46 189.5 121 75.2
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-45 187.6 121 74.4
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-45 187.2 118 76.3
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.5e-45 186.8 116 76.7
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.6e-45 185.7 118 75.4
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.2e-44 184.5 239 47.7
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.1e-44 183.7 118 74.6
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-44 183.3 118 73.7
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.9e-43 178.3 295 42.7
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.9e-39 165.6 155 56.1
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.9e-39 165.6 93 86.0
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 9.5e-37 158.3 102 73.5
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 2.1e-36 157.1 102 72.5
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.1e-29 134.8 89 74.2
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.6e-28 131.0 84 72.6
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.6e-28 129.8 135 54.1
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 7.5e-26 122.1 95 62.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 7.5e-26 122.1 95 62.1
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-22 110.5 92 65.2
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-22 110.2 92 64.1
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-21 106.7 92 64.1
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.2e-20 102.4 64 78.1
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-19 101.3 64 78.1
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 2.3e-19 100.5 74 73.0
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.4e-16 91.3 69 66.7
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.1e-16 89.7 105 49.5
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 7.1e-16 89.0 50 78.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 7.1e-16 89.0 50 78.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.1e-15 87.4 50 76.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 2.1e-15 87.4 50 76.0
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 2.1e-15 87.4 230 28.3
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 4.6e-15 86.3 47 76.6
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.6e-15 86.3 78 59.0
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 1.7e-14 84.3 62 64.5
BcaC03g13467 Brassica carinata HOM05D002486 ORTHO05D002606 3.2e-08 63.5 153 32.0
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 4.2e-08 63.2 88 43.2
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 6.0e-07 59.3 62 53.2


User provided reference genes

Program Settings