Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0137 Punica granatum HOM05D006802 ORTHO05D008507 8.0e-244 846.7 427 100.0
PGR047G0003 Punica granatum HOM05D006802 ORTHO05D008507 8.0e-244 846.7 427 100.0
Eucgr.K03337 Eucalyptus grandis HOM05D006802 ORTHO05D008507 4.1e-115 419.1 473 51.2
Cfa006184 Carpinus fangiana HOM05D006802 ORTHO05D008507 1.2e-106 391.0 467 48.4
Gohir.A12G003100 Gossypium hirsutum HOM05D006802 ORTHO05D008507 1.5e-104 384.0 419 50.1
Atru.chr5.1503 Acer truncatum HOM05D006802 ORTHO05D008507 7.3e-104 381.7 472 46.8
Haze_04660 Corylus avellana HOM05D006802 ORTHO05D008507 3.6e-103 379.4 471 48.2
Sabra02G0040100 Salix brachista HOM05D006802 ORTHO05D008507 1.8e-102 377.1 476 47.7
Potri.002G049300 Populus trichocarpa HOM05D006802 ORTHO05D008507 5.2e-102 375.6 469 46.3
Duzib133G0133 Durio zibethinus HOM05D006802 ORTHO05D008507 4.9e-100 369.0 459 46.0
QL12p020415 Quercus lobata HOM05D006802 ORTHO05D008507 1.9e-99 367.1 475 45.5
CSS0013542 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 6.0e-98 362.1 461 45.3
CSS0022180 Camellia sinensis var. sinensis HOM05D006802 ORTHO05D008507 7.8e-98 361.7 464 45.5
Thecc.01G272900 Theobroma cacao HOM05D006802 ORTHO05D008507 1.0e-97 361.3 460 45.7
Manes.01G204700 Manihot esculenta HOM05D006802 ORTHO05D008507 1.3e-97 360.9 466 45.3
Gorai.008G002600 Gossypium raimondii HOM05D006802 ORTHO05D008507 3.3e-96 356.3 458 45.0
Rhsim01G0272400 Rhododendron simsii HOM05D006802 ORTHO05D008507 2.8e-95 353.2 455 45.9
Cpa.g.sc52.110 Carica papaya HOM05D006802 ORTHO05D008507 3.6e-95 352.8 468 45.7
Hma1.2p1_1924F.1_g307690 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 3.6e-95 352.8 464 44.6
vmacro14901 Vaccinium macrocarpon HOM05D006802 ORTHO05D008507 1.8e-94 350.5 461 45.6
ClCG09G007380 Citrullus lanatus HOM05D006802 ORTHO05D008507 8.9e-94 348.2 459 44.9
TWI75G0310 Tripterygium wilfordii HOM05D006802 ORTHO05D008507 4.4e-93 345.9 468 45.1
CANSAT25G2646 Cannabis sativa HOM05D006802 ORTHO05D008507 7.6e-93 345.1 458 47.4
Lj1A51G14 Lonicera japonica HOM05D006802 ORTHO05D008507 1.7e-92 344.0 469 43.5
Oeu023625.1 Olea europaea HOM05D006802 ORTHO05D008507 7.1e-91 338.6 456 45.0
MD03G1259400 Malus domestica HOM05D006802 ORTHO05D008507 9.2e-91 338.2 459 45.3
Sed0009701 Sechium edule HOM05D006802 ORTHO05D008507 9.2e-91 338.2 476 43.1
PGSC0003DMG400019349 Solanum tuberosum HOM05D006802 ORTHO05D008507 2.1e-90 337.0 458 45.0
Aqoxy2G03446 Aquilegia oxysepala HOM05D006802 ORTHO05D008507 1.3e-89 334.3 482 42.7
FAN15G2517 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.0e-89 333.2 456 43.9
FAN15G2655 Fragaria x ananassa HOM05D006802 ORTHO05D008507 3.0e-89 333.2 456 43.9
Sopen09g027330 Solanum pennellii HOM05D006802 ORTHO05D008507 3.9e-89 332.8 458 44.3
PSO170G3117 Papaver somniferum HOM05D006802 ORTHO05D008507 6.6e-89 332.0 475 42.7
COL.COLO4_09049 Corchorus olitorius HOM05D006802 ORTHO05D008507 1.1e-88 331.3 461 43.0
CsaV3_7G027850 Cucumis sativus L. HOM05D006802 ORTHO05D008507 3.3e-88 329.7 463 43.4
Prupe.8G235900 Prunus persica HOM05D006802 ORTHO05D008507 4.3e-88 329.3 459 44.0
RcHm_v2.0_Chr6g0290231 Rosa chinensis HOM05D006802 ORTHO05D008507 1.3e-87 327.8 457 43.8
CiPaw.07G088100 Carya illinoinensis HOM05D006802 ORTHO05D008507 2.1e-87 327.0 420 46.0
Lalb_Chr02g0142571 Lupinus albus HOM05D006802 ORTHO05D008507 4.8e-87 325.9 468 44.2
CAN.G433.12 Capsicum annuum HOM05D006802 ORTHO05D008507 6.2e-87 325.5 462 43.1
Ah.11g050290 Amaranthus hybridus HOM05D006802 ORTHO05D008507 3.1e-86 323.2 473 41.6
Ciclev10023787m.g Citrus clementina HOM05D006802 ORTHO05D008507 9.0e-86 321.6 444 43.9
FAN20G1382 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.5e-85 320.9 457 42.7
Hund02858 Selenicereus undatus HOM05D006802 ORTHO05D008507 2.0e-85 320.5 479 41.1
FvH4_2g23081 Fragaria vesca HOM05D006802 ORTHO05D008507 2.9e-84 316.6 456 42.3
FAN24G3569 Fragaria x ananassa HOM05D006802 ORTHO05D008507 1.9e-83 313.9 456 42.1
FAN27G2418 Fragaria x ananassa HOM05D006802 ORTHO05D008507 4.2e-83 312.8 456 42.1
Cc01_g19110 Coffea canephora HOM05D006802 ORTHO05D008507 3.5e-82 309.7 455 42.6
ECA236G2804 Erigeron canadensis HOM05D006802 ORTHO05D008507 1.0e-81 308.1 456 43.0
AL5G46150 Arabidopsis lyrata HOM05D006802 ORTHO05D008507 1.7e-81 307.4 463 42.5
EL10Ac5g10508 Beta vulgaris HOM05D006802 ORTHO05D008507 8.7e-81 305.1 469 41.8
Glyma.02G144900 Glycine max HOM05D006802 ORTHO05D008507 1.9e-80 303.9 459 41.6
THA.LOC104801985 Tarenaya hassleriana HOM05D006802 ORTHO05D008507 1.9e-80 303.9 464 41.6
AUR62011982 Chenopodium quinoa HOM05D006802 ORTHO05D008507 4.3e-80 302.8 467 41.5
MELO3C015801.2 Cucumis melo HOM05D006802 ORTHO05D008507 4.3e-80 302.8 462 41.3
DCAR_005859 Daucus carota HOM05D006802 ORTHO05D008507 3.1e-78 296.6 477 41.5
TPR.G25699 Trifolium pratense HOM05D006802 ORTHO05D008507 1.2e-77 294.7 464 42.0
HanXRQChr04g0115321 Helianthus annuus HOM05D006802 ORTHO05D008507 1.5e-77 294.3 462 42.9
Aa31LG10G17140 Aethionema arabicum HOM05D000738 ORTHO05D000675 2.0e-77 293.9 472 40.5
AUR62032294 Chenopodium quinoa HOM05D006802 ORTHO05D008507 2.0e-77 293.9 474 40.1
Thhalv10006021m.g Eutrema salsugineum HOM05D006802 ORTHO05D008507 2.6e-77 293.5 459 40.7
Medtr1g071470 Medicago truncatula HOM05D006802 ORTHO05D008507 7.6e-77 292.0 464 42.5
VMungo0720G2797 Vigna mungo HOM05D006802 ORTHO05D008507 2.2e-76 290.4 459 39.9
Phvul.007G174300 Phaseolus vulgaris HOM05D006802 ORTHO05D008507 2.9e-76 290.0 462 40.0
Sc05g0001260 Simmondsia chinensis HOM05D006802 ORTHO05D008507 3.8e-76 289.7 465 39.4
Lj5g0013924 Lotus japonicus HOM05D006802 ORTHO05D008507 8.4e-76 288.5 459 41.6
Lsat_1_v5_gn_8_57120 Lactuca sativa HOM05D006802 ORTHO05D008507 5.4e-75 285.8 456 41.0
Ca_09735_v3 Cicer arietinum L. HOM05D000738 ORTHO05D000675 1.2e-74 284.6 467 42.6
CARHR291660 Cardamine hirsuta HOM05D006802 ORTHO05D008507 4.6e-74 282.7 462 39.4
Gohir.D12G002800 Gossypium hirsutum HOM05D006802 ORTHO05D008507 5.1e-73 279.3 308 48.4
C04p29940 Brassica napus HOM05D000738 ORTHO05D000675 2.1e-71 273.9 460 38.0
BolC4t24525H Brassica oleracea HOM05D006802 ORTHO05D000675 8.1e-71 271.9 460 38.0
ATR0665G117 Amborella trichopoda HOM05D006802 ORTHO05D008507 1.1e-70 271.6 458 40.0
BraA04t15733Z Brassica rapa HOM05D006802 ORTHO05D000675 4.0e-70 269.6 459 37.5
SalBow4G3164 Salvia bowleyana HOM05D006802 ORTHO05D008507 5.3e-70 269.2 456 38.4
A04p00130 Brassica napus HOM05D006802 ORTHO05D008507 6.9e-70 268.9 459 37.5
Migut.D00338 Erythranthe guttata HOM05D006802 ORTHO05D008507 3.4e-69 266.5 459 40.1
unitig_8.g3726 Utricularia gibba HOM05D006802 ORTHO05D008507 4.5e-69 266.2 456 38.6
MBI11_g04239_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 8.4e-68 261.9 414 37.9
Carub.0005s2995 Capsella rubella HOM05D006802 ORTHO05D008507 4.2e-67 259.6 413 41.9
FAN27G1711 Fragaria x ananassa HOM05D006802 ORTHO05D008507 4.2e-67 259.6 333 46.5
Solyc09g065580.4 Solanum lycopersicum HOM05D006802 ORTHO05D008507 2.1e-66 257.3 413 40.7
Nitab4.5_0000252g0180 Nicotiana tabacum HOM05D006802 ORTHO05D008507 6.0e-66 255.8 416 40.9
SGA_v2.0_scaffold138G35303 Striga asiatica HOM05D006802 ORTHO05D008507 5.1e-65 252.7 455 37.8
Nitab4.5_0000678g0020 Nicotiana tabacum HOM05D006802 ORTHO05D008507 9.6e-64 248.4 423 39.7
Zm00001eb202090 Zea mays HOM05D006802 ORTHO05D008507 2.4e-62 243.8 483 35.6
arahy.Tifrunner.gnm1.ann1.BH5QN1 Arachis hypogaea HOM05D006802 ORTHO05D008507 2.6e-61 240.4 386 40.9
Peaxi162Scf00230g00716 Petunia axillaris HOM05D006802 ORTHO05D008507 1.4e-59 234.6 411 38.9
BcaB02g08069 Brassica carinata HOM05D006802 ORTHO05D008507 4.6e-58 229.6 336 41.7
Psat6g059280 Pisum sativum HOM05D006802 ORTHO05D008507 6.7e-57 225.7 358 41.1
Os10g0208500 Oryza sativa ssp. japonica HOM05D006802 ORTHO05D008507 9.7e-56 221.9 492 33.5
GSVIVG01001200001 Vitis vinifera HOM05D006802 ORTHO05D008507 9.7e-56 221.9 229 51.5
SalBow4G0867 Salvia bowleyana HOM05D006802 ORTHO05D008507 2.2e-55 220.7 456 34.6
arahy.Tifrunner.gnm1.ann1.M4INHU Arachis hypogaea HOM05D006802 ORTHO05D008507 2.8e-55 220.3 364 41.2
Dinv32894 Davidia involucrata HOM05D000738 ORTHO05D000675 1.7e-52 211.1 229 52.4
Actinidia21140 Actinidia chinensis HOM05D006802 ORTHO05D008507 2.9e-52 210.3 455 33.8
Sp5g00240 Schrenkiella parvula HOM05D006802 ORTHO05D008507 6.1e-50 202.6 309 40.5
Mapoly0127s0046 Marchantia polymorpha HOM05D006802 ORTHO05D008507 7.9e-50 202.2 459 32.9
AagrBONN_evm.TU.Sc2ySwM_368.2173 Anthoceros agrestis HOM05D006802 ORTHO05D008507 1.8e-49 201.1 450 31.1
CDE05G0787 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 8.2e-47 192.2 307 39.4
AT3G63290 Arabidopsis thaliana HOM05D006802 ORTHO05D008507 4.5e-45 186.4 310 37.7
Hma1.2p1_1924F.1_g307700 Hydrangea macrophylla HOM05D006802 ORTHO05D008507 7.2e-43 179.1 183 49.7
Pp3c22_5720 Physcomitrium patens HOM05D006802 ORTHO05D008507 6.1e-42 176.0 498 30.7
SMO358G0716 Selaginella moellendorffii HOM05D006802 ORTHO05D008507 1.8e-41 174.5 402 33.8
SEGI_17080 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 2.4e-38 164.1 334 36.2
SEGI_40565 Sequoiadendron giganteum HOM05D006802 ORTHO05D008507 2.4e-38 164.1 334 36.2
Glyma.10G029100 Glycine max HOM05D006802 ORTHO05D008507 1.0e-33 148.7 270 40.0
MBI11_g35085_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 2.6e-32 144.1 241 37.8
MBI11_g35086_MAGBIO Magnolia biondii HOM05D006802 ORTHO05D008507 1.7e-23 114.8 194 33.5
Pp3c22_5780 Physcomitrium patens HOM05D006802 ORTHO05D008507 7.2e-19 99.4 331 27.8
GSVIVG01001201001 Vitis vinifera HOM05D006802 ORTHO05D008507 3.4e-16 90.5 94 52.1
MD11G1280000 Malus domestica HOM05D006802 ORTHO05D008507 9.1e-14 82.4 92 45.7
Nn6g34147 Nelumbo nucifera HOM05D006802 ORTHO05D008507 9.1e-14 82.4 94 50.0
CDE05G1612 Ceratophyllum demersum HOM05D006802 ORTHO05D008507 1.0e-12 79.0 98 48.0
HPP92_023543 Vanilla planifolia HOM05D006802 ORTHO05D008507 1.3e-12 78.6 95 46.3
CBR_g56394 Chara braunii HOM05D006802 ORTHO05D008507 3.0e-09 67.4 90 38.9
BcaB02g08068 Brassica carinata HOM05D006802 ORTHO05D008507 1.7e-07 61.6 68 48.5
Aqoxy7G01830 Aquilegia oxysepala HOM05D005850 ORTHO05D007405 6.3e-07 59.7 253 28.1
CBR_g37310 Chara braunii HOM05D005850 ORTHO05D007405 6.3e-07 59.7 252 27.4
CiPaw.03G235100 Carya illinoinensis HOM05D005850 ORTHO05D007405 1.4e-06 58.5 251 26.7
DCAR_028730 Daucus carota HOM05D005850 ORTHO05D007405 4.1e-06 57.0 285 24.2
FAN27G1988 Fragaria x ananassa HOM05D006802 ORTHO05D008507 5.4e-06 56.6 43 55.8
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 7.0e-06 56.2 283 25.1
MBI01_g03369_MAGBIO Magnolia biondii HOM05D005850 ORTHO05D007405 9.2e-06 55.8 285 23.5
PSO782G2614 Papaver somniferum HOM05D005850 ORTHO05D007405 9.2e-06 55.8 279 24.0


User provided reference genes

Program Settings