Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2731 Punica granatum HOM05D006090 ORTHO05D007600 5.8e-43 177.2 90 100.0
Prupe.8G199000 Prunus persica HOM05D006090 ORTHO05D007600 6.2e-37 157.1 87 86.2
Gohir.D07G205600 Gossypium hirsutum HOM05D006090 ORTHO05D007600 1.8e-36 155.6 90 82.2
MD05G1171700 Malus domestica HOM05D006090 ORTHO05D007600 3.1e-36 154.8 87 85.1
MD10G1159900 Malus domestica HOM05D006090 ORTHO05D007600 3.1e-36 154.8 86 86.0
Gohir.A07G199200 Gossypium hirsutum HOM05D006090 ORTHO05D007600 4.0e-36 154.5 90 81.1
Gorai.001G231600 Gossypium raimondii HOM05D006090 ORTHO05D007600 5.2e-36 154.1 90 81.1
BcaB04g17463 Brassica carinata HOM05D006090 ORTHO05D007600 6.8e-36 153.7 90 82.2
Thecc.02G015400 Theobroma cacao HOM05D006090 ORTHO05D007600 6.8e-36 153.7 90 83.3
Thhalv10011899m.g Eutrema salsugineum HOM05D006090 ORTHO05D007600 8.9e-36 153.3 90 82.2
Manes.06G087700 Manihot esculenta HOM05D006090 ORTHO05D007600 8.9e-36 153.3 90 80.0
Nn8g41078 Nelumbo nucifera HOM05D006090 ORTHO05D007600 8.9e-36 153.3 90 82.2
BcaC07g37170 Brassica carinata HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 81.1
C08p05430 Brassica napus HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 81.1
BolC8t47360H Brassica oleracea HOM05D006090 ORTHO05D007600 1.5e-35 152.5 90 81.1
CARHR037780 Cardamine hirsuta HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 80.0
Hma1.2p1_0052F.1_g030080 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 82.2
Sp1g35110 Schrenkiella parvula HOM05D006090 ORTHO05D007600 2.6e-35 151.8 90 81.1
BraA08t32537Z Brassica rapa HOM05D006090 ORTHO05D007600 3.4e-35 151.4 90 81.1
CSS0021939 Camellia sinensis var. sinensis HOM05D006090 ORTHO05D007600 5.8e-35 150.6 88 81.8
Carub.0001s3724 Capsella rubella HOM05D006090 ORTHO05D007600 5.8e-35 150.6 90 77.8
FvH4_2g18550 Fragaria vesca HOM05D006090 ORTHO05D007600 5.8e-35 150.6 87 79.3
FAN15G1212 Fragaria x ananassa HOM05D006090 ORTHO05D007600 5.8e-35 150.6 87 79.3
PGR004G1711 Punica granatum HOM05D006090 ORTHO05D007600 5.8e-35 150.6 89 84.3
AL1G54720 Arabidopsis lyrata HOM05D006090 ORTHO05D007600 9.8e-35 149.8 90 78.9
RcHm_v2.0_Chr6g0284111 Rosa chinensis HOM05D006090 ORTHO05D007600 9.8e-35 149.8 87 79.3
AT1G48140 Arabidopsis thaliana HOM05D006090 ORTHO05D007600 1.3e-34 149.4 90 77.8
Dinv19173 Davidia involucrata HOM05D006090 ORTHO05D007600 1.3e-34 149.4 90 81.1
THA.LOC104802658 Tarenaya hassleriana HOM05D006090 ORTHO05D007600 1.7e-34 149.1 90 78.9
A08p05190 Brassica napus HOM05D006090 ORTHO05D007600 2.2e-34 148.7 90 80.0
Potri.002G245800 Populus trichocarpa HOM05D006090 ORTHO05D007600 2.2e-34 148.7 90 80.0
Duzib211G0047 Durio zibethinus HOM05D006090 ORTHO05D007600 2.9e-34 148.3 87 81.6
Duzib211G0371 Durio zibethinus HOM05D006090 ORTHO05D007600 2.9e-34 148.3 87 81.6
CANSAT21G0941 Cannabis sativa HOM05D006090 ORTHO05D007600 3.7e-34 147.9 87 83.9
Psat3g148760 Pisum sativum HOM05D006090 ORTHO05D007600 4.9e-34 147.5 90 78.9
TAR362G1026 Trochodendron aralioides HOM05D006090 ORTHO05D007600 6.4e-34 147.1 90 80.0
Sed0025432 Sechium edule HOM05D006090 ORTHO05D007600 8.3e-34 146.7 90 78.9
TPR.G6479 Trifolium pratense HOM05D006090 ORTHO05D007600 1.1e-33 146.4 90 75.6
Glyma.08G349000 Glycine max HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 76.7
Medtr7g056250 Medicago truncatula HOM05D006090 ORTHO05D007600 1.9e-33 145.6 90 76.7
vmacro14732 Vaccinium macrocarpon HOM05D006090 ORTHO05D007600 1.9e-33 145.6 87 79.3
CiPaw.01G050400 Carya illinoinensis HOM05D006090 ORTHO05D007600 2.4e-33 145.2 90 80.0
TWI18G0803 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 2.4e-33 145.2 90 77.8
ClCG10G009020 Citrullus lanatus HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 76.7
ECA248G3406 Erigeron canadensis HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 74.4
MBI04_g03342_MAGBIO Magnolia biondii HOM05D006090 ORTHO05D007600 3.2e-33 144.8 90 75.6
Thecc.01G220300 Theobroma cacao HOM05D006090 ORTHO05D007600 4.1e-33 144.4 87 79.3
HanXRQChr01g0015271 Helianthus annuus HOM05D006090 ORTHO05D007600 5.4e-33 144.1 90 75.6
Cc06_g17130 Coffea canephora HOM05D006090 ORTHO05D007600 7.0e-33 143.7 90 76.7
PSO170G6116 Papaver somniferum HOM05D006090 ORTHO05D007600 7.0e-33 143.7 90 76.7
Rhsim01G0252800 Rhododendron simsii HOM05D006090 ORTHO05D007600 7.0e-33 143.7 90 76.7
Lj1g0010865 Lotus japonicus HOM05D006090 ORTHO05D007600 9.2e-33 143.3 88 75.0
TWI36G1609 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 9.2e-33 143.3 88 78.4
Ca_06547_v3 Cicer arietinum L. HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 73.3
Lj5g0019908 Lotus japonicus HOM05D006090 ORTHO05D007600 1.2e-32 142.9 88 76.1
Solyc01g005110.3 Solanum lycopersicum HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 75.6
Sopen01g001130 Solanum pennellii HOM05D006090 ORTHO05D007600 1.2e-32 142.9 90 75.6
Atru.chr6.1016 Acer truncatum HOM05D006090 ORTHO05D007600 1.6e-32 142.5 89 75.3
PSO445G0009 Papaver somniferum HOM05D006090 ORTHO05D007600 2.1e-32 142.1 90 75.6
CAN.G282.104 Capsicum annuum HOM05D006090 ORTHO05D007600 2.7e-32 141.7 90 75.6
Lalb_Chr03g0041481 Lupinus albus HOM05D006090 ORTHO05D007600 3.5e-32 141.4 88 75.0
SalBow6G1264 Salvia bowleyana HOM05D006090 ORTHO05D007600 3.5e-32 141.4 90 75.6
SalBow6G7055 Salvia bowleyana HOM05D006090 ORTHO05D007600 3.5e-32 141.4 90 75.6
CAN.G151.21 Capsicum annuum HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 76.7
Eucgr.A02241 Eucalyptus grandis HOM05D006090 ORTHO05D007600 6.0e-32 140.6 90 76.7
FAN24G0022 Fragaria x ananassa HOM05D006090 ORTHO05D007600 6.0e-32 140.6 100 68.0
Aa31LG10G5590 Aethionema arabicum HOM05D006090 ORTHO05D007600 7.8e-32 140.2 97 71.1
Hma1.2p1_0226F.1_g095400 Hydrangea macrophylla HOM05D006090 ORTHO05D007600 7.8e-32 140.2 90 76.7
Lsat_1_v5_gn_8_5041 Lactuca sativa HOM05D006090 ORTHO05D007600 7.8e-32 140.2 90 75.6
Oeu051534.1 Olea europaea HOM05D006090 ORTHO05D007600 1.0e-31 139.8 90 74.4
Os02g0749450 Oryza sativa ssp. japonica HOM05D006090 ORTHO05D007600 1.0e-31 139.8 90 74.4
Sp3g06170 Schrenkiella parvula HOM05D006090 ORTHO05D007600 1.0e-31 139.8 88 72.7
Migut.N03342 Erythranthe guttata HOM05D006090 ORTHO05D007600 1.3e-31 139.4 90 74.4
QL02p097583 Quercus lobata HOM05D006090 ORTHO05D007600 1.3e-31 139.4 89 74.2
GSVIVG01028416001 Vitis vinifera HOM05D006090 ORTHO05D007600 1.7e-31 139.0 88 76.1
TWI75G0179 Tripterygium wilfordii HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 76.7
Zm00001eb059180 Zea mays HOM05D006090 ORTHO05D007600 3.0e-31 138.3 90 75.6
Aa31LG5G17800 Aethionema arabicum HOM05D006090 ORTHO05D007600 3.9e-31 137.9 90 70.0
Nitab4.5_0014260g0010 Nicotiana tabacum HOM05D006090 ORTHO05D007600 3.9e-31 137.9 90 73.3
Peaxi162Scf01111g00025 Petunia axillaris HOM05D006090 ORTHO05D007600 3.9e-31 137.9 90 73.3
EL10Ac7g17901 Beta vulgaris HOM05D006090 ORTHO05D007600 5.1e-31 137.5 90 71.1
BcaC08g43006 Brassica carinata HOM05D006090 ORTHO05D007600 5.1e-31 137.5 91 72.5
C06p02550 Brassica napus HOM05D006090 ORTHO05D007600 5.1e-31 137.5 91 72.5
CDE09G0476 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 6.6e-31 137.1 90 73.3
Nitab4.5_0000521g0090 Nicotiana tabacum HOM05D006090 ORTHO05D007600 6.6e-31 137.1 90 72.2
Phvul.002G080700 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 8.6e-31 136.7 86 74.4
Sed0016973 Sechium edule HOM05D006090 ORTHO05D007600 8.6e-31 136.7 86 75.6
BolC6t35383H Brassica oleracea HOM05D006090 ORTHO05D007600 1.1e-30 136.3 91 72.5
QL09p032732 Quercus lobata HOM05D006090 ORTHO05D007600 1.5e-30 136.0 89 75.3
Lsat_1_v5_gn_5_180801 Lactuca sativa HOM05D006090 ORTHO05D007600 7.3e-30 133.7 84 73.8
Phvul.002G081100 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 2.1e-29 132.1 90 72.2
BcaB04g21317 Brassica carinata HOM05D006090 ORTHO05D007600 2.8e-29 131.7 88 67.0
BNapus_Darmor_BZH_scaffold_109p00180 Brassica napus HOM05D006090 ORTHO05D007600 2.8e-29 131.7 88 69.3
Cpa.g.sc71.6 Carica papaya HOM05D006090 ORTHO05D007600 1.4e-28 129.4 84 76.2
Ciclev10023078m.g Citrus clementina HOM05D006090 ORTHO05D007600 3.1e-28 128.3 75 81.3
BcaB07g33788 Brassica carinata HOM05D006090 ORTHO05D007600 4.0e-28 127.9 94 68.1
Haze_03967 Corylus avellana HOM05D006090 ORTHO05D007600 6.8e-28 127.1 97 69.1
unitig_8.g4837 Utricularia gibba HOM05D006090 ORTHO05D007600 8.9e-28 126.7 90 67.8
PGSC0003DMG400022770 Solanum tuberosum HOM05D006090 ORTHO05D007600 7.5e-27 123.6 124 54.8
arahy.Tifrunner.gnm1.ann1.7I8V6Q Arachis hypogaea HOM05D006090 ORTHO05D007600 1.3e-26 122.9 86 70.9
Duzib138G1257 Durio zibethinus HOM05D006090 ORTHO05D007600 1.3e-26 122.9 69 84.1
arahy.Tifrunner.gnm1.ann1.NKLH1V Arachis hypogaea HOM05D006090 ORTHO05D007600 1.7e-26 122.5 86 69.8
Cpa.g.sc428.3 Carica papaya HOM05D006090 ORTHO05D007600 3.7e-26 121.3 70 84.3
HPP92_023706 Vanilla planifolia HOM05D006090 ORTHO05D007600 3.7e-26 121.3 87 65.5
Medtr3g437420 Medicago truncatula HOM05D006090 ORTHO05D007600 8.3e-26 120.2 70 77.1
MELO3C026729.2 Cucumis melo HOM05D006090 ORTHO05D007600 3.2e-25 118.2 70 81.4
Actinidia30052 Actinidia chinensis HOM05D006090 ORTHO05D007600 1.0e-23 113.2 68 76.5
BraA01t04392Z Brassica rapa HOM05D006090 ORTHO05D007600 1.7e-23 112.5 79 69.6
Lj2C1126T3 Lonicera japonica HOM05D006090 ORTHO05D007600 1.7e-23 112.5 63 82.5
Rhsim13G0047700 Rhododendron simsii HOM05D006090 ORTHO05D007600 6.6e-23 110.5 71 77.5
Phvul.009G016400 Phaseolus vulgaris HOM05D006090 ORTHO05D007600 4.3e-22 107.8 65 76.9
Sabra02G0187100 Salix brachista HOM05D006090 ORTHO05D007600 2.8e-21 105.1 60 81.7
Eucgr.K03282 Eucalyptus grandis HOM05D006090 ORTHO05D007600 2.4e-20 102.1 57 87.7
CDE02G0014 Ceratophyllum demersum HOM05D006090 ORTHO05D007600 6.8e-20 100.5 73 67.1
CiPaw.02G023500 Carya illinoinensis HOM05D006090 ORTHO05D007600 2.0e-19 99.0 80 67.5
Haze_15253 Corylus avellana HOM05D006090 ORTHO05D007600 2.0e-19 99.0 77 68.8
Glyma.18G167500 Glycine max HOM05D006090 ORTHO05D007600 7.6e-19 97.1 58 79.3
Mapoly0057s0028 Marchantia polymorpha HOM05D006090 ORTHO05D007600 6.4e-18 94.0 89 55.1
TAR633G0277 Trochodendron aralioides HOM05D006090 ORTHO05D007600 1.1e-17 93.2 67 74.6
AagrBONN_evm.TU.Sc2ySwM_228.829 Anthoceros agrestis HOM05D006090 ORTHO05D007600 2.1e-13 79.0 90 47.8
Pp3c20_9690 Physcomitrium patens HOM05D006090 ORTHO05D007600 2.8e-13 78.6 93 45.2
arahy.Tifrunner.gnm1.ann1.L6G805 Arachis hypogaea HOM05D006090 ORTHO05D007600 9.9e-11 70.1 53 66.0
Nitab4.5_0001873g0080 Nicotiana tabacum HOM05D006090 ORTHO05D007600 8.4e-10 67.0 47 63.8
arahy.Tifrunner.gnm1.ann1.DI5ISS Arachis hypogaea HOM05D006090 ORTHO05D038896 3.3e-06 55.1 41 68.3


User provided reference genes

Program Settings