Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2696 Punica granatum HOM05D001115 ORTHO05D011468 8.9e-131 470.3 243 100.0
Eucgr.C02896 Eucalyptus grandis HOM05D001115 ORTHO05D011468 8.5e-65 251.1 242 55.8
CiPaw.07G206500 Carya illinoinensis HOM05D001115 ORTHO05D011468 6.5e-57 224.9 236 50.4
Thecc.09G040900 Theobroma cacao HOM05D001115 ORTHO05D011468 4.5e-50 202.2 240 48.3
Atru.chr7.2150 Acer truncatum HOM05D001115 ORTHO05D011468 5.9e-50 201.8 244 49.2
QL12p026643 Quercus lobata HOM05D001115 ORTHO05D011468 9.4e-48 194.5 248 47.2
QL12p029602 Quercus lobata HOM05D001115 ORTHO05D011468 9.4e-48 194.5 248 47.2
Gohir.D06G095600 Gossypium hirsutum HOM05D001115 ORTHO05D011468 1.6e-47 193.7 229 48.5
Gorai.010G110100 Gossypium raimondii HOM05D001115 ORTHO05D011468 1.6e-47 193.7 229 48.5
Ciclev10010490m.g Citrus clementina HOM05D001115 ORTHO05D011468 1.1e-45 187.6 188 52.1
MD15G1096800 Malus domestica HOM05D001115 ORTHO05D011468 1.4e-43 180.6 189 50.3
TWI34G1268 Tripterygium wilfordii HOM05D001115 ORTHO05D011468 3.5e-42 176.0 230 45.7
Potri.018G038400 Populus trichocarpa HOM05D001115 ORTHO05D011468 3.8e-41 172.6 243 41.6
Potri.006G241400 Populus trichocarpa HOM05D001115 ORTHO05D011468 9.4e-40 167.9 242 42.6
RcHm_v2.0_Chr6g0305861 Rosa chinensis HOM05D001115 ORTHO05D011468 9.4e-40 167.9 193 49.7
Cc08_g09090 Coffea canephora HOM05D001115 ORTHO05D011468 1.6e-39 167.2 193 45.6
FvH4_2g36010 Fragaria vesca HOM05D001115 ORTHO05D011468 1.2e-37 161.0 194 47.9
Dinv14233 Davidia involucrata HOM05D001115 ORTHO05D011468 4.8e-36 155.6 160 53.1
MD08G1117200 Malus domestica HOM05D001115 ORTHO05D011468 1.8e-35 153.7 151 51.7
Actinidia15732 Actinidia chinensis HOM05D001115 ORTHO05D011468 5.0e-33 145.6 185 41.6
Gohir.A06G095500 Gossypium hirsutum HOM05D001115 ORTHO05D011468 2.5e-32 143.3 212 40.6
GSVIVG01035661001 Vitis vinifera HOM05D001115 ORTHO05D011468 2.6e-29 133.3 200 42.0
Sabra18G0038800 Salix brachista HOM05D001115 ORTHO05D011468 6.3e-28 128.6 242 34.7
Nn3g18076 Nelumbo nucifera HOM05D001115 ORTHO05D011468 4.1e-27 125.9 184 38.0
Prupe.1G451700 Prunus persica HOM05D001115 ORTHO05D011468 5.0e-25 119.0 187 41.2
Cc06_g18740 Coffea canephora HOM05D001115 ORTHO05D011468 2.8e-23 113.2 138 44.9
FAN15G0541 Fragaria x ananassa HOM05D001021 ORTHO05D000894 2.4e-19 100.1 138 44.9
Manes.03G061200 Manihot esculenta HOM05D001115 ORTHO05D011468 1.7e-17 94.0 213 34.7
Atru.chr6.3006 Acer truncatum HOM05D001115 ORTHO05D001023 1.6e-15 87.4 164 31.1
Glyma.12G111700 Glycine max HOM05D001115 ORTHO05D001023 2.3e-14 83.6 166 31.3
Phvul.011G117300 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 4.0e-14 82.8 166 31.9
VMungo1127G0219 Vigna mungo HOM05D001115 ORTHO05D001023 8.9e-14 81.6 167 31.7
Lalb_Chr19g0135301 Lupinus albus HOM05D001115 ORTHO05D001023 1.2e-13 81.3 166 30.7
Glyma.06G293700 Glycine max HOM05D001115 ORTHO05D001023 1.5e-13 80.9 166 30.7
Manes.13G147500 Manihot esculenta HOM05D001115 ORTHO05D001023 4.4e-13 79.3 165 30.9
PGR004G1130 Punica granatum HOM05D001115 ORTHO05D001023 7.5e-13 78.6 219 27.9
Lj3g0023189 Lotus japonicus HOM05D001115 ORTHO05D001023 9.8e-13 78.2 166 29.5
Eucgr.A01807 Eucalyptus grandis HOM05D001115 ORTHO05D001023 1.7e-12 77.4 159 29.6
arahy.Tifrunner.gnm1.ann1.E3DXNV Arachis hypogaea HOM05D001115 ORTHO05D001023 2.2e-12 77.0 205 27.8
Nitab4.5_0002526g0050 Nicotiana tabacum HOM05D001115 ORTHO05D001023 3.7e-12 76.3 174 28.7
CANSAT78G1646 Cannabis sativa HOM05D001115 ORTHO05D001023 4.9e-12 75.9 165 29.7
Ca_25914_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 4.9e-12 75.9 166 30.1
Nitab4.5_0000512g0160 Nicotiana tabacum HOM05D001115 ORTHO05D001023 6.4e-12 75.5 174 28.7
TPR.G21758 Trifolium pratense HOM05D001115 ORTHO05D001023 6.4e-12 75.5 166 30.1
Peaxi162Scf00132g00422 Petunia axillaris HOM05D001115 ORTHO05D001023 1.1e-11 74.7 166 29.5
Rhsim07G0153200 Rhododendron simsii HOM05D001115 ORTHO05D011468 1.4e-11 74.3 184 29.9
Solyc07g054160.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 1.9e-11 73.9 167 29.9
PGR042G0194 Punica granatum HOM05D001115 ORTHO05D001023 2.4e-11 73.6 168 29.2
Sopen07g028090 Solanum pennellii HOM05D001115 ORTHO05D001023 2.4e-11 73.6 167 29.9
Cpa.g.sc34.143 Carica papaya HOM05D001115 ORTHO05D001023 3.2e-11 73.2 197 25.9
Duzib052G0128 Durio zibethinus HOM05D001115 ORTHO05D001023 3.2e-11 73.2 165 29.1
Dinv02169 Davidia involucrata HOM05D001115 ORTHO05D001023 4.1e-11 72.8 170 29.4
TWI36G0781 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 4.1e-11 72.8 165 28.5
AL3G53850 Arabidopsis lyrata HOM05D001115 ORTHO05D001023 7.0e-11 72.0 168 27.4
TAR624G0150 Trochodendron aralioides HOM05D001115 ORTHO05D001023 7.0e-11 72.0 195 28.7
MSTRG.12313 Avicennia marina HOM05D001115 ORTHO05D001023 9.2e-11 71.6 167 31.1
Cpa.g.sc27.59 Carica papaya HOM05D001115 ORTHO05D001023 9.2e-11 71.6 210 29.0
CiPaw.04G125100 Carya illinoinensis HOM05D001115 ORTHO05D001023 9.2e-11 71.6 165 28.5
Thecc.02G177800 Theobroma cacao HOM05D001115 ORTHO05D001023 9.2e-11 71.6 166 28.9
AT2G20740 Arabidopsis thaliana HOM05D001115 ORTHO05D001023 1.2e-10 71.2 168 27.4
Duzib248G1488 Durio zibethinus HOM05D001115 ORTHO05D001023 1.2e-10 71.2 165 29.1
HanXRQChr17g0553551 Helianthus annuus HOM05D001115 ORTHO05D001023 1.2e-10 71.2 150 28.7
Oeu058381.1 Olea europaea HOM05D001115 ORTHO05D001023 1.6e-10 70.9 167 30.5
PGSC0003DMG400018311 Solanum tuberosum HOM05D001115 ORTHO05D001023 1.6e-10 70.9 167 29.3
TWI18G0226 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 1.6e-10 70.9 165 27.9
Oeu017970.1 Olea europaea HOM05D001115 ORTHO05D001023 2.0e-10 70.5 167 30.5
TAR626G1725 Trochodendron aralioides HOM05D001115 ORTHO05D001023 2.0e-10 70.5 165 30.3
GSVIVG01030374001 Vitis vinifera HOM05D001115 ORTHO05D001023 2.0e-10 70.5 164 29.3
Carub.0003s3526 Capsella rubella HOM05D001115 ORTHO05D001023 2.7e-10 70.1 168 26.8
vmacro09277 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 2.7e-10 70.1 170 31.2
Dinv12923 Davidia involucrata HOM05D001115 ORTHO05D001023 4.6e-10 69.3 170 28.8
Sp3g33990 Schrenkiella parvula HOM05D001115 ORTHO05D001023 4.6e-10 69.3 165 27.3
ATR0680G167 Amborella trichopoda HOM05D001115 ORTHO05D001023 6.0e-10 68.9 164 28.0
Lj2A287T55 Lonicera japonica HOM05D001115 ORTHO05D001023 6.0e-10 68.9 197 28.9
Potri.013G134200 Populus trichocarpa HOM05D001115 ORTHO05D001023 6.0e-10 68.9 170 28.2
CSS0040668 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 7.8e-10 68.6 169 29.6
Sabra06G0188800 Salix brachista HOM05D001115 ORTHO05D011468 7.8e-10 68.6 160 33.8
Actinidia11044 Actinidia chinensis HOM05D001115 ORTHO05D001023 1.0e-09 68.2 168 29.8
ClCG02G017570 Citrullus lanatus HOM05D001115 ORTHO05D001023 1.0e-09 68.2 166 27.7
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 1.0e-09 68.2 211 26.1
Dinv07543 Davidia involucrata HOM05D001115 ORTHO05D001023 1.0e-09 68.2 172 28.5
Rhsim04G0067900 Rhododendron simsii HOM05D001115 ORTHO05D001023 1.0e-09 68.2 177 31.1
RhsimUnG0037000 Rhododendron simsii HOM05D001115 ORTHO05D001023 1.0e-09 68.2 177 31.1
Migut.H01075 Erythranthe guttata HOM05D001115 ORTHO05D001023 1.7e-09 67.4 167 30.5
Potri.004G041500 Populus trichocarpa HOM05D001115 ORTHO05D001023 1.7e-09 67.4 116 32.8
Atru.chr10.1912 Acer truncatum HOM05D001115 ORTHO05D001023 2.3e-09 67.0 168 28.6
Thhalv10002095m.g Eutrema salsugineum HOM05D001115 ORTHO05D001023 2.3e-09 67.0 165 26.7
CARHR111410 Cardamine hirsuta HOM05D001115 ORTHO05D001023 3.0e-09 66.6 165 25.5
Potri.019G101800 Populus trichocarpa HOM05D001115 ORTHO05D001023 3.0e-09 66.6 169 26.0
CAN.G248.20 Capsicum annuum HOM05D001115 ORTHO05D001023 3.9e-09 66.2 167 27.5
ECA246G2980 Erigeron canadensis HOM05D001115 ORTHO05D001023 3.9e-09 66.2 157 26.8
COL.COLO4_07553 Corchorus olitorius HOM05D001115 ORTHO05D001023 5.0e-09 65.9 165 26.7
MELO3C013608.2 Cucumis melo HOM05D001115 ORTHO05D001023 6.6e-09 65.5 211 25.1
Os04g0679900 Oryza sativa ssp. japonica HOM05D001115 ORTHO05D001023 6.6e-09 65.5 162 27.2
SGA_v2.0_scaffold109G31116 Striga asiatica HOM05D001115 ORTHO05D001023 6.6e-09 65.5 165 30.3
Actinidia09860 Actinidia chinensis HOM05D001115 ORTHO05D001023 8.6e-09 65.1 168 29.8
CAN.G1164.11 Capsicum annuum HOM05D001115 ORTHO05D001023 8.6e-09 65.1 172 27.3
arahy.Tifrunner.gnm1.ann1.ALBM4S Arachis hypogaea HOM05D001115 ORTHO05D001023 1.1e-08 64.7 168 29.2
RcHm_v2.0_Chr2g0126211 Rosa chinensis HOM05D001115 ORTHO05D001023 1.1e-08 64.7 187 28.9
THA.LOC104814499 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 1.1e-08 64.7 165 26.7
arahy.Tifrunner.gnm1.ann1.2K180M Arachis hypogaea HOM05D001115 ORTHO05D001023 1.5e-08 64.3 161 29.2
PGSC0003DMG400022440 Solanum tuberosum HOM05D001115 ORTHO05D001023 1.5e-08 64.3 172 26.7
GSVIVG01002019001 Vitis vinifera HOM05D001115 ORTHO05D001023 1.5e-08 64.3 162 29.6
C07p00170 Brassica napus HOM05D001115 ORTHO05D001023 1.9e-08 63.9 164 28.0
BolC7t40468H Brassica oleracea HOM05D001115 ORTHO05D001023 1.9e-08 63.9 164 28.0
CSS0001393 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 1.9e-08 63.9 138 28.3
Hma1.2p1_1201F.1_g266710 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 1.9e-08 63.9 167 29.9
Prupe.3G155500 Prunus persica HOM05D001115 ORTHO05D001023 1.9e-08 63.9 161 29.2
BcaC06g36765 Brassica carinata HOM05D001115 ORTHO05D001023 2.5e-08 63.5 164 28.0
CiPaw.03G175400 Carya illinoinensis HOM05D001115 ORTHO05D001023 2.5e-08 63.5 160 26.9
Lsat_1_v5_gn_8_132900 Lactuca sativa HOM05D001115 ORTHO05D001023 2.5e-08 63.5 200 26.0
A07p00030 Brassica napus HOM05D001115 ORTHO05D001023 3.3e-08 63.2 164 28.0
BraA07t27795Z Brassica rapa HOM05D001115 ORTHO05D001023 3.3e-08 63.2 164 28.0
BcaB03g16867 Brassica carinata HOM05D001115 ORTHO05D001023 4.3e-08 62.8 159 28.3
MD17G1242500 Malus domestica HOM05D001115 ORTHO05D001023 4.3e-08 62.8 167 28.1
Aqoxy1G02522 Aquilegia oxysepala HOM05D001115 ORTHO05D001023 5.6e-08 62.4 113 34.5
HPP92_021013 Vanilla planifolia HOM05D001115 ORTHO05D001023 5.6e-08 62.4 166 30.7
SEGI_39764 Sequoiadendron giganteum HOM05D001115 ORTHO05D001023 7.3e-08 62.0 148 28.4
CSS0027947 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 9.5e-08 61.6 139 29.5
FvH4_6g26130 Fragaria vesca HOM05D001115 ORTHO05D001023 9.5e-08 61.6 197 29.4
Gorai.011G026600 Gossypium raimondii HOM05D001115 ORTHO05D001023 9.5e-08 61.6 186 26.3
Gohir.A10G024600 Gossypium hirsutum HOM05D001115 ORTHO05D001023 1.2e-07 61.2 186 26.3
vmacro05362 Vaccinium macrocarpon HOM05D001115 ORTHO05D011468 1.2e-07 61.2 183 27.3
Zm00001eb065970 Zea mays HOM05D001115 ORTHO05D001023 1.6e-07 60.8 162 27.2
Gohir.D10G025300 Gossypium hirsutum HOM05D001115 ORTHO05D001023 2.1e-07 60.5 166 26.5
Prupe.4G044700 Prunus persica HOM05D001115 ORTHO05D001023 2.1e-07 60.5 164 29.3
Sopen02g023300 Solanum pennellii HOM05D001115 ORTHO05D001023 2.8e-07 60.1 172 26.2
TWI38G2403 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 4.7e-07 59.3 201 24.9
PSO675G8670 Papaver somniferum HOM05D001115 ORTHO05D001023 6.2e-07 58.9 164 26.8
Potri.011G050900 Populus trichocarpa HOM05D001115 ORTHO05D001023 6.2e-07 58.9 166 28.9
Solyc02g078450.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 6.2e-07 58.9 172 26.2
Duzib235G0287 Durio zibethinus HOM05D001115 ORTHO05D001023 8.0e-07 58.5 206 24.3
Cc02_g13180 Coffea canephora HOM05D001115 ORTHO05D001023 1.1e-06 58.2 155 25.8
SalBow1G1588 Salvia bowleyana HOM05D001115 ORTHO05D001023 1.1e-06 58.2 92 34.8
SMO134G0242 Selaginella moellendorffii HOM05D001115 ORTHO05D001023 1.4e-06 57.8 178 27.5
FvH4_3g04940 Fragaria vesca HOM05D001115 ORTHO05D001023 1.8e-06 57.4 165 28.5
FAN16G2292 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.8e-06 57.4 165 28.5
FAN21G2614 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.8e-06 57.4 165 28.5
FAN25G2831 Fragaria x ananassa HOM05D001115 ORTHO05D001023 1.8e-06 57.4 165 28.5
QL08p038410 Quercus lobata HOM05D001115 ORTHO05D001023 1.8e-06 57.4 168 25.6
RcHm_v2.0_Chr5g0008101 Rosa chinensis HOM05D001115 ORTHO05D001023 1.8e-06 57.4 165 28.5
HPP92_027299 Vanilla planifolia HOM05D001115 ORTHO05D001023 1.8e-06 57.4 188 25.5
Eucgr.D00635 Eucalyptus grandis HOM05D001115 ORTHO05D001023 2.3e-06 57.0 160 28.1
AUR62037360 Chenopodium quinoa HOM05D001115 ORTHO05D001023 3.1e-06 56.6 160 25.0
Duzib160G0769 Durio zibethinus HOM05D001115 ORTHO05D001023 3.1e-06 56.6 166 25.9
MD05G1314500 Malus domestica HOM05D001115 ORTHO05D001023 4.0e-06 56.2 158 30.4
Manes.16G026100 Manihot esculenta HOM05D001115 ORTHO05D001023 4.0e-06 56.2 167 26.3
FAN11G0571 Fragaria x ananassa HOM05D001115 ORTHO05D001023 6.8e-06 55.5 165 27.9


User provided reference genes

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