Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2669 Punica granatum HOM05D007100 ORTHO05D008958 2.7e-78 295.8 218 100.0
MELO3C011269.2 Cucumis melo HOM05D007100 ORTHO05D008958 1.3e-48 197.2 219 68.5
CsaV3_2G032160 Cucumis sativus L. HOM05D007100 ORTHO05D008958 1.7e-48 196.8 219 66.2
VMungo1309G2169 Vigna mungo HOM05D007100 ORTHO05D008958 1.7e-48 196.8 219 66.2
ClCG08G013430 Citrullus lanatus HOM05D007100 ORTHO05D008958 2.9e-48 196.1 219 69.4
CANSAT25G0532 Cannabis sativa HOM05D007100 ORTHO05D008958 8.4e-48 194.5 219 65.3
Cpa.g.sc217.8 Carica papaya HOM05D007100 ORTHO05D008958 1.4e-47 193.7 222 68.0
Thecc.09G023500 Theobroma cacao HOM05D007100 ORTHO05D008958 4.2e-47 192.2 232 62.1
Manes.16G122700 Manihot esculenta HOM05D007100 ORTHO05D008958 3.5e-46 189.1 224 67.4
Cc08_g00530 Coffea canephora HOM05D007100 ORTHO05D008958 7.9e-46 188.0 221 67.4
AUR62031529 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.3e-45 187.2 221 64.3
Sed0021254 Sechium edule HOM05D007100 ORTHO05D008958 1.3e-45 187.2 217 69.6
Oeu057296.2 Olea europaea HOM05D007100 ORTHO05D008958 2.3e-45 186.4 222 67.1
Aqoxy7G03649 Aquilegia oxysepala HOM05D007100 ORTHO05D008958 1.1e-44 184.1 219 66.7
Sabra18G0029100 Salix brachista HOM05D007100 ORTHO05D008958 1.5e-44 183.7 218 61.0
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 3.3e-44 182.6 228 60.5
Atru.chr7.2441 Acer truncatum HOM05D007100 ORTHO05D008958 4.3e-44 182.2 226 63.7
Manes.03G013900 Manihot esculenta HOM05D007100 ORTHO05D008958 4.3e-44 182.2 221 67.0
Duzib168G1945 Durio zibethinus HOM05D007100 ORTHO05D008958 5.7e-44 181.8 223 60.5
TAR625G1529 Trochodendron aralioides HOM05D007100 ORTHO05D008958 5.7e-44 181.8 221 66.5
Lalb_Chr08g0244131 Lupinus albus HOM05D007100 ORTHO05D008958 9.6e-44 181.0 218 65.1
Potri.006G255600 Populus trichocarpa HOM05D007100 ORTHO05D008958 9.6e-44 181.0 223 61.9
Eucgr.C02765 Eucalyptus grandis HOM05D007100 ORTHO05D008958 2.1e-43 179.9 228 60.1
Phvul.009G092366 Phaseolus vulgaris HOM05D007100 ORTHO05D008958 2.1e-43 179.9 218 65.1
Solyc06g066000.3 Solanum lycopersicum HOM05D007100 ORTHO05D008958 2.1e-43 179.9 226 63.3
Sopen06g024480 Solanum pennellii HOM05D007100 ORTHO05D008958 2.1e-43 179.9 226 63.3
PGSC0003DMG400020484 Solanum tuberosum HOM05D007100 ORTHO05D008958 2.1e-43 179.9 226 63.3
ATR0800G074 Amborella trichopoda HOM05D007100 ORTHO05D008958 2.8e-43 179.5 144 69.4
COL.COLO4_18868 Corchorus olitorius HOM05D007100 ORTHO05D008958 2.8e-43 179.5 223 61.9
Potri.018G026500 Populus trichocarpa HOM05D007100 ORTHO05D008958 3.7e-43 179.1 223 61.9
Sopen06g024470 Solanum pennellii HOM05D007100 ORTHO05D008958 3.7e-43 179.1 225 64.0
CARHR240140 Cardamine hirsuta HOM05D007100 ORTHO05D008958 1.4e-42 177.2 223 60.1
PGSC0003DMG400020466 Solanum tuberosum HOM05D007100 ORTHO05D008958 1.8e-42 176.8 225 61.8
BolC1t00671H Brassica oleracea HOM05D007100 ORTHO05D008958 3.1e-42 176.0 216 60.2
BraA01t00579Z Brassica rapa HOM05D007100 ORTHO05D008958 4.1e-42 175.6 228 57.5
Solyc06g065990.1 Solanum lycopersicum HOM05D007100 ORTHO05D008958 4.1e-42 175.6 225 65.8
CSS0028708 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 6.9e-42 174.9 220 65.9
CSS0035808 Camellia sinensis var. sinensis HOM05D007100 ORTHO05D008958 6.9e-42 174.9 220 65.9
Ca_15742_v3 Cicer arietinum L. HOM05D007100 ORTHO05D008958 6.9e-42 174.9 163 78.5
Medtr3g106820 Medicago truncatula HOM05D007100 ORTHO05D008958 9.0e-42 174.5 217 64.5
BcaC09g52005 Brassica carinata HOM05D007100 ORTHO05D008958 1.5e-41 173.7 220 59.1
Lj1g0026662 Lotus japonicus HOM05D007100 ORTHO05D008958 1.5e-41 173.7 219 65.3
Hma1.2p1_0243F.1_g100880 Hydrangea macrophylla HOM05D007100 ORTHO05D008958 2.6e-41 172.9 220 69.5
CAN.G1230.3 Capsicum annuum HOM05D007100 ORTHO05D008958 3.4e-41 172.6 226 60.2
Ah.10g035800 Amaranthus hybridus HOM05D007100 ORTHO05D008958 7.6e-41 171.4 223 58.7
CiPaw.03G162500 Carya illinoinensis HOM05D007100 ORTHO05D008958 7.6e-41 171.4 221 64.3
PSO210G6161 Papaver somniferum HOM05D007100 ORTHO05D008958 7.6e-41 171.4 225 58.7
AUR62012407 Chenopodium quinoa HOM05D007100 ORTHO05D008958 1.0e-40 171.0 156 73.1
Lsat_1_v5_gn_6_21280 Lactuca sativa HOM05D007100 ORTHO05D008958 1.0e-40 171.0 221 58.8
Prupe.1G482000 Prunus persica HOM05D007100 ORTHO05D008958 1.0e-40 171.0 219 61.6
TPR.G3111 Trifolium pratense HOM05D007100 ORTHO05D008958 1.0e-40 171.0 216 62.0
unitig_32.g11115 Utricularia gibba HOM05D007100 ORTHO05D008958 1.0e-40 171.0 159 75.5
TWI32G1182 Tripterygium wilfordii HOM05D007100 ORTHO05D008958 2.2e-40 169.9 225 61.8
Thhalv10026214m.g Eutrema salsugineum HOM05D007100 ORTHO05D008958 3.8e-40 169.1 221 62.0
Glyma.06G067400 Glycine max HOM05D007100 ORTHO05D008958 5.0e-40 168.7 217 66.4
MD15G1126100 Malus domestica HOM05D007100 ORTHO05D008958 5.0e-40 168.7 220 60.9
PSO210G2345 Papaver somniferum HOM05D007100 ORTHO05D008958 5.0e-40 168.7 226 58.0
RcHm_v2.0_Chr6g0297791 Rosa chinensis HOM05D007100 ORTHO05D008958 6.5e-40 168.3 216 61.6
Cfa013136 Carpinus fangiana HOM05D007100 ORTHO05D008958 1.4e-39 167.2 218 63.3
Sp7g29990 Schrenkiella parvula HOM05D007100 ORTHO05D008958 1.9e-39 166.8 223 61.4
Nitab4.5_0003634g0020 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.5e-39 166.4 167 71.3
HanXRQChr13g0403031 Helianthus annuus HOM05D007100 ORTHO05D008958 3.2e-39 166.0 221 62.9
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 4.2e-39 165.6 158 74.1
Migut.A00035 Erythranthe guttata HOM05D007100 ORTHO05D008958 5.5e-39 165.2 218 56.9
FvH4_2g28951 Fragaria vesca HOM05D007100 ORTHO05D008958 5.5e-39 165.2 216 61.6
Aa31LG2G17720 Aethionema arabicum HOM05D007100 ORTHO05D008958 9.3e-39 164.5 221 58.8
FAN20G2791 Fragaria x ananassa HOM05D007100 ORTHO05D008958 9.3e-39 164.5 216 61.1
Glyma.04G066000 Glycine max HOM05D007100 ORTHO05D008958 9.3e-39 164.5 217 59.9
MBI18_g07570_MAGBIO Magnolia biondii HOM05D007100 ORTHO05D008958 9.3e-39 164.5 204 65.7
QL02p021503 Quercus lobata HOM05D007100 ORTHO05D008958 1.6e-38 163.7 221 62.0
AL7G19610 Arabidopsis lyrata HOM05D007100 ORTHO05D008958 4.6e-38 162.2 227 56.8
Carub.0007s0834 Capsella rubella HOM05D007100 ORTHO05D008958 4.6e-38 162.2 227 56.8
Nn2g12100 Nelumbo nucifera HOM05D007100 ORTHO05D008958 1.8e-37 160.2 142 81.7
AT4G32260 Arabidopsis thaliana HOM05D007100 ORTHO05D008958 3.9e-37 159.1 227 56.4
SGA_v2.0_scaffold20G09112 Striga asiatica HOM05D007100 ORTHO05D008958 6.7e-37 158.3 219 56.2
BcaNung03145 Brassica carinata HOM05D002526 ORTHO05D004039 5.7e-36 155.2 226 58.4
C01p06770 Brassica napus HOM05D002526 ORTHO05D004039 1.3e-35 154.1 162 59.9
Ciclev10009435m.g Citrus clementina HOM05D007100 ORTHO05D008958 1.6e-35 153.7 222 47.7
Rhsim02G0202100 Rhododendron simsii HOM05D007100 ORTHO05D008958 1.6e-35 153.7 217 59.9
ECA233G2559 Erigeron canadensis HOM05D007100 ORTHO05D008958 2.8e-35 152.9 221 63.8
A01p06140 Brassica napus HOM05D002526 ORTHO05D004039 8.2e-35 151.4 174 58.6
Dinv08635 Davidia involucrata HOM05D007100 ORTHO05D008958 8.2e-35 151.4 129 76.0
CDE02G1895 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.1e-34 151.0 229 57.2
EL10Ac2g04205 Beta vulgaris HOM05D007100 ORTHO05D008958 1.2e-33 147.5 219 58.9
CDE08G0375 Ceratophyllum demersum HOM05D007100 ORTHO05D008958 1.2e-33 147.5 170 64.7
Sc09g0008150 Simmondsia chinensis HOM05D007100 ORTHO05D008958 1.3e-32 144.1 162 70.4
Duzib150G1121 Durio zibethinus HOM05D007100 ORTHO05D008958 2.9e-32 142.9 224 57.1
HPP92_017087 Vanilla planifolia HOM05D007100 ORTHO05D008958 3.6e-30 136.0 158 68.4
Lj7A724T61 Lonicera japonica HOM05D007100 ORTHO05D008958 1.5e-28 130.6 215 55.8
Os03g0278900 Oryza sativa ssp. japonica HOM05D007100 ORTHO05D008958 1.3e-27 127.5 162 65.4
Nitab4.5_0011986g0010 Nicotiana tabacum HOM05D007100 ORTHO05D008958 2.8e-27 126.3 126 74.6
AagrBONN_evm.TU.Sc2ySwM_117.789 Anthoceros agrestis HOM05D007100 ORTHO05D008958 6.3e-27 125.2 159 62.9
Zm00001eb397520 Zea mays HOM05D007100 ORTHO05D008958 1.1e-26 124.4 152 68.4
Gohir.D07G032851 Gossypium hirsutum HOM05D007100 ORTHO05D008958 3.1e-26 122.9 106 80.2
SEGI_36293 Sequoiadendron giganteum HOM05D007100 ORTHO05D008958 8.5e-24 114.8 170 59.4
CiPaw.05G145000 Carya illinoinensis HOM05D007100 ORTHO05D008958 2.5e-23 113.2 72 84.7
Sabra06G0199900 Salix brachista HOM05D007100 ORTHO05D008958 1.8e-21 107.1 108 73.1
Gohir.A07G028825 Gossypium hirsutum HOM05D007100 ORTHO05D008958 8.8e-21 104.8 106 73.6
SMO347G0047 Selaginella moellendorffii HOM05D007100 ORTHO05D008958 1.1e-20 104.4 85 61.2
Cre11.g481450 Chlamydomonas reinhardtii HOM05D007100 ORTHO05D008958 3.7e-19 99.4 173 35.8
HPP92_017015 Vanilla planifolia HOM05D007100 ORTHO05D008958 4.1e-18 95.9 157 43.9
Pp3c16_15270 Physcomitrium patens HOM05D007100 ORTHO05D008958 5.3e-18 95.5 119 50.4
Pp3c5_7810 Physcomitrium patens HOM05D007100 ORTHO05D008958 9.1e-18 94.7 119 50.4
Pp3c6_23221 Physcomitrium patens HOM05D007100 ORTHO05D008958 1.2e-17 94.4 119 50.4
Nitab4.5_0002042g0090 Nicotiana tabacum HOM05D007100 ORTHO05D008958 1.6e-17 94.0 106 73.6
Mapoly0061s0013 Marchantia polymorpha HOM05D007100 ORTHO05D008958 1.7e-16 90.5 172 52.9
PRCOL_00004936 Prasinoderma coloniale HOM05D007100 ORTHO05D008958 7.2e-15 85.1 141 52.5
RcHm_v2.0_Chr4g0429151 Rosa chinensis HOM05D007100 ORTHO05D008958 8.0e-14 81.6 60 71.7
CBR_g39245 Chara braunii HOM05D007100 ORTHO05D008958 8.8e-13 78.2 103 45.6
Psat2g007880 Pisum sativum HOM05D007100 ORTHO05D008958 1.2e-12 77.8 81 56.8
MCO01G691 Micromonas commoda HOM05D007100 ORTHO05D008958 2.4e-10 70.1 70 57.1
ATR0829G181 Amborella trichopoda HOM05D007100 ORTHO05D008958 8.5e-08 61.6 139 38.1
ATR0743G144 Amborella trichopoda HOM05D007100 ORTHO05D008958 1.1e-07 61.2 92 47.8


User provided reference genes

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