Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2662 Punica granatum HOM05D004383 ORTHO05D005050 3.0e-99 365.2 181 100.0
Manes.03G007300 Manihot esculenta HOM05D004383 ORTHO05D005050 2.1e-92 342.4 181 91.7
Manes.16G131700 Manihot esculenta HOM05D004383 ORTHO05D005050 4.6e-92 341.3 181 91.2
Duzib187G0841 Durio zibethinus HOM05D004383 ORTHO05D005050 6.0e-92 340.9 181 91.2
Gorai.009G064600 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.3e-91 339.7 179 91.6
COL.COLO4_18979 Corchorus olitorius HOM05D002641 ORTHO05D005050 1.8e-91 339.3 181 91.2
Gohir.D06G105600 Gossypium hirsutum HOM05D004383 ORTHO05D005050 1.8e-91 339.3 179 92.7
CiPaw.08G004800 Carya illinoinensis HOM05D004383 ORTHO05D005050 3.9e-91 338.2 181 91.7
Eucgr.C04036 Eucalyptus grandis HOM05D004383 ORTHO05D005050 3.9e-91 338.2 181 91.2
Thecc.09G012700 Theobroma cacao HOM05D004383 ORTHO05D005050 3.9e-91 338.2 179 92.2
Gohir.A05G061400 Gossypium hirsutum HOM05D004383 ORTHO05D005050 5.1e-91 337.8 179 91.1
RcHm_v2.0_Chr6g0299241 Rosa chinensis HOM05D004383 ORTHO05D005050 6.7e-91 337.4 181 91.2
Atru.chr7.2584 Acer truncatum HOM05D004383 ORTHO05D005050 1.1e-90 336.7 181 91.7
Gorai.010G120200 Gossypium raimondii HOM05D004383 ORTHO05D005050 1.1e-90 336.7 179 91.6
CANSAT64G0435 Cannabis sativa HOM05D004383 ORTHO05D005050 1.9e-90 335.9 181 91.2
Gohir.D05G063900 Gossypium hirsutum HOM05D004383 ORTHO05D005050 3.3e-90 335.1 179 90.5
GSVIVG01035992001 Vitis vinifera HOM05D004383 ORTHO05D005050 4.3e-90 334.7 179 92.2
Duzib168G1681 Durio zibethinus HOM05D004383 ORTHO05D005050 1.3e-89 333.2 181 90.1
TWI32G1179 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 1.3e-89 333.2 181 89.5
FvH4_3g24420 Fragaria vesca HOM05D004383 ORTHO05D005050 1.6e-89 332.8 181 89.5
Hma1.2p1_0355F.1_g133920 Hydrangea macrophylla HOM05D004383 ORTHO05D005050 1.6e-89 332.8 181 91.2
Prupe.1G396200 Prunus persica HOM05D004383 ORTHO05D005050 1.6e-89 332.8 181 89.5
CSS0047262 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 3.7e-89 331.6 181 87.8
FAN21G1236 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.8e-89 331.3 181 89.0
Potri.006G266300 Populus trichocarpa HOM05D004383 ORTHO05D005050 6.3e-89 330.9 179 87.7
Cc00_g24580 Coffea canephora HOM05D004383 ORTHO05D005050 8.2e-89 330.5 179 89.4
FAN16G3501 Fragaria x ananassa HOM05D004383 ORTHO05D005050 1.1e-88 330.1 181 87.8
MD15G1042900 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-88 330.1 181 89.0
Potri.018G016800 Populus trichocarpa HOM05D004383 ORTHO05D005050 1.4e-88 329.7 181 87.3
ECA238G1890 Erigeron canadensis HOM05D004383 ORTHO05D005050 3.1e-88 328.6 181 87.8
Lj7A737G42 Lonicera japonica HOM05D004383 ORTHO05D005050 5.3e-88 327.8 181 89.5
Sed0012000 Sechium edule HOM05D004383 ORTHO05D005050 9.0e-88 327.0 181 87.8
TWI34G1410 Tripterygium wilfordii HOM05D004383 ORTHO05D005050 9.0e-88 327.0 181 88.4
CiPaw.07G231900 Carya illinoinensis HOM05D004383 ORTHO05D005050 1.5e-87 326.2 181 88.4
Peaxi162Scf00045g01943 Petunia axillaris HOM05D004383 ORTHO05D005050 2.6e-87 325.5 176 89.2
MELO3C016948.2 Cucumis melo HOM05D004383 ORTHO05D005050 3.4e-87 325.1 181 87.8
CSS0026414 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.5e-87 324.7 181 87.3
AUR62024788 Chenopodium quinoa HOM05D004383 ORTHO05D005050 5.9e-87 324.3 181 86.7
Hund25610 Selenicereus undatus HOM05D004383 ORTHO05D005050 5.9e-87 324.3 182 87.4
CsaV3_4G036420 Cucumis sativus L. HOM05D004383 ORTHO05D005050 2.2e-86 322.4 181 87.3
Actinidia14139 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.9e-86 322.0 181 87.3
AUR62032433 Chenopodium quinoa HOM05D004383 ORTHO05D005050 2.9e-86 322.0 181 85.6
CAN.G285.20 Capsicum annuum HOM05D004383 ORTHO05D005050 5.0e-86 321.2 176 88.1
Lsat_1_v5_gn_8_16540 Lactuca sativa HOM05D004383 ORTHO05D005050 5.0e-86 321.2 175 89.7
Sopen08g002600 Solanum pennellii HOM05D004383 ORTHO05D005050 6.5e-86 320.9 176 88.6
PGSC0003DMG400026285 Solanum tuberosum HOM05D004383 ORTHO05D005050 6.5e-86 320.9 176 88.6
Nitab4.5_0000264g0060 Nicotiana tabacum HOM05D004383 ORTHO05D005050 8.5e-86 320.5 176 89.2
arahy.Tifrunner.gnm1.ann1.S5PPFL Arachis hypogaea HOM05D004383 ORTHO05D005050 1.9e-85 319.3 182 86.3
Nn3g19885 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.9e-85 319.3 181 85.6
ClCG05G016150 Citrullus lanatus HOM05D004383 ORTHO05D005050 3.2e-85 318.5 181 86.2
Sed0009310 Sechium edule HOM05D004383 ORTHO05D005050 4.2e-85 318.2 181 86.7
Solyc08g006650.3 Solanum lycopersicum HOM05D004383 ORTHO05D005050 5.5e-85 317.8 176 88.1
arahy.Tifrunner.gnm1.ann1.W5C21C Arachis hypogaea HOM05D004383 ORTHO05D005050 7.2e-85 317.4 180 86.1
Rhsim07G0166500 Rhododendron simsii HOM05D004383 ORTHO05D005050 9.4e-85 317.0 203 80.3
QL02p018464 Quercus lobata HOM05D004383 ORTHO05D005050 1.2e-84 316.6 168 92.3
EL10Ac2g02480 Beta vulgaris HOM05D004383 ORTHO05D005050 1.6e-84 316.2 176 88.1
Ciclev10009603m.g Citrus clementina HOM05D004383 ORTHO05D005050 1.6e-84 316.2 167 92.8
TAR625G0171 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.7e-84 315.5 181 84.5
TAR625G1552 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.7e-84 315.5 181 84.5
Ah.12g060630 Amaranthus hybridus HOM05D004383 ORTHO05D005050 3.6e-84 315.1 175 88.6
Carub.0006s0928 Capsella rubella HOM05D004383 ORTHO05D005050 3.6e-84 315.1 181 84.0
HanXRQChr12g0370101 Helianthus annuus HOM05D004383 ORTHO05D005050 3.6e-84 315.1 170 89.4
Aa31LG3G16320 Aethionema arabicum HOM05D004383 ORTHO05D005050 4.6e-84 314.7 181 82.9
THA.LOC104824960 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 7.9e-84 313.9 181 82.9
Thhalv10014802m.g Eutrema salsugineum HOM05D004383 ORTHO05D005050 1.0e-83 313.5 181 82.9
Cpa.g.sc148.37 Carica papaya HOM05D004383 ORTHO05D005050 1.4e-83 313.2 177 87.6
ECA233G1452 Erigeron canadensis HOM05D004383 ORTHO05D005050 1.4e-83 313.2 170 88.2
AL6G21360 Arabidopsis lyrata HOM05D004383 ORTHO05D005050 1.8e-83 312.8 181 83.4
AT5G10780 Arabidopsis thaliana HOM05D004383 ORTHO05D005050 1.8e-83 312.8 181 83.4
THA.LOC104799028 Tarenaya hassleriana HOM05D004383 ORTHO05D005050 1.8e-83 312.8 181 82.9
BcaB01g06278 Brassica carinata HOM05D004383 ORTHO05D005050 3.0e-83 312.0 181 81.8
SGA_v2.0_scaffold4G02162 Striga asiatica HOM05D004383 ORTHO05D005050 3.0e-83 312.0 181 84.5
MSTRG.13961 Avicennia marina HOM05D004383 ORTHO05D005050 3.9e-83 311.6 181 82.9
Sp6g32680 Schrenkiella parvula HOM05D004383 ORTHO05D005050 5.1e-83 311.2 181 81.8
BcaB01g05499 Brassica carinata HOM05D004383 ORTHO05D005050 8.8e-83 310.5 181 81.8
CARHR202520 Cardamine hirsuta HOM05D004383 ORTHO05D005050 8.8e-83 310.5 181 82.3
Nn1g03128 Nelumbo nucifera HOM05D004383 ORTHO05D005050 1.1e-82 310.1 181 86.2
BcaB05g21506 Brassica carinata HOM05D004383 ORTHO05D005050 1.5e-82 309.7 181 80.7
Migut.E01443 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.0e-82 309.3 181 83.4
FAN05G0819 Fragaria x ananassa HOM05D004383 ORTHO05D005050 2.0e-82 309.3 171 88.3
Phvul.001G042400 Phaseolus vulgaris HOM05D004383 ORTHO05D005050 2.0e-82 309.3 180 85.0
Sabra18G0020200 Salix brachista HOM05D004383 ORTHO05D005050 2.0e-82 309.3 170 87.1
Oeu010290.1 Olea europaea HOM05D004383 ORTHO05D005050 2.5e-82 308.9 181 80.7
FvH4_6g27370 Fragaria vesca HOM05D004383 ORTHO05D005050 4.3e-82 308.1 171 87.7
SGA_v2.0_scaffold169G38599 Striga asiatica HOM05D004383 ORTHO05D005050 4.3e-82 308.1 181 82.9
Haze_21384 Corylus avellana HOM05D004383 ORTHO05D005050 5.7e-82 307.8 224 72.3
HanXRQChr07g0201211 Helianthus annuus HOM05D004383 ORTHO05D005050 5.7e-82 307.8 181 85.1
Lalb_Chr24g0401921 Lupinus albus HOM05D004383 ORTHO05D005050 1.3e-81 306.6 181 82.9
Sabra06G0208900 Salix brachista HOM05D004383 ORTHO05D005050 1.3e-81 306.6 169 86.4
CSS0025027 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 1.7e-81 306.2 170 88.2
A03p04760 Brassica napus HOM05D004383 ORTHO05D005050 2.2e-81 305.8 182 80.8
VMungo0647G1739 Vigna mungo HOM05D004383 ORTHO05D005050 2.2e-81 305.8 180 83.9
BcaC03g13332 Brassica carinata HOM05D004383 ORTHO05D005050 2.8e-81 305.4 182 80.8
A02p00660 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-81 305.4 182 80.8
C02p04660 Brassica napus HOM05D004383 ORTHO05D005050 2.8e-81 305.4 182 80.8
BraA02t05050Z Brassica rapa HOM05D004383 ORTHO05D005050 8.2e-81 303.9 182 80.2
BraA03t09816Z Brassica rapa HOM05D004383 ORTHO05D005050 1.8e-80 302.8 182 80.2
Glyma.17G222100 Glycine max HOM05D004383 ORTHO05D005050 1.8e-80 302.8 180 83.3
Lj6g0009294 Lotus japonicus HOM05D004383 ORTHO05D005050 3.1e-80 302.0 183 82.5
Nitab4.5_0001362g0040 Nicotiana tabacum HOM05D004383 ORTHO05D005050 3.1e-80 302.0 169 87.0
FAN14G2933 Fragaria x ananassa HOM05D004383 ORTHO05D005050 4.1e-80 301.6 175 85.1
C03p05470 Brassica napus HOM05D004383 ORTHO05D005050 9.1e-80 300.4 174 82.2
Glyma.14G103800 Glycine max HOM05D004383 ORTHO05D005050 9.1e-80 300.4 180 82.8
vmacro05117 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 9.1e-80 300.4 168 88.1
Ca_13075_v3 Cicer arietinum L. HOM05D004383 ORTHO05D005050 1.5e-79 299.7 178 83.1
TPR.G38877 Trifolium pratense HOM05D004383 ORTHO05D005050 1.5e-79 299.7 178 83.1
Medtr1g013660 Medicago truncatula HOM05D004383 ORTHO05D005050 3.4e-79 298.5 178 82.6
SalBow8G1520 Salvia bowleyana HOM05D004383 ORTHO05D005050 3.4e-79 298.5 168 85.7
PSO017G0706 Papaver somniferum HOM05D004383 ORTHO05D005050 4.5e-79 298.1 183 82.5
PSO170G1218 Papaver somniferum HOM05D004383 ORTHO05D005050 4.5e-79 298.1 183 82.5
Oeu021906.1 Olea europaea HOM05D004383 ORTHO05D005050 5.9e-79 297.7 168 85.1
Psat6g025120 Pisum sativum HOM05D004383 ORTHO05D005050 1.7e-78 296.2 178 82.6
Migut.A00383 Erythranthe guttata HOM05D004383 ORTHO05D005050 2.2e-78 295.8 181 80.1
MD08G1052600 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-77 293.5 177 83.6
CDE02G0236 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 7.2e-77 290.8 181 80.1
CDE05G2494 Ceratophyllum demersum HOM05D004383 ORTHO05D005050 1.6e-76 289.7 181 80.7
BolC3t13057H Brassica oleracea HOM05D004383 ORTHO05D005050 2.7e-76 288.9 168 82.1
ATR0580G398 Amborella trichopoda HOM05D004383 ORTHO05D005050 6.1e-76 287.7 178 81.5
BolC2t06425H Brassica oleracea HOM05D004383 ORTHO05D003478 7.9e-76 287.3 169 81.7
DCAR_003054 Daucus carota HOM05D004383 ORTHO05D005050 1.4e-75 286.6 168 84.5
MBI14_g31383_MAGBIO Magnolia biondii HOM05D004383 ORTHO05D005050 3.0e-75 285.4 180 79.4
unitig_32.g11121 Utricularia gibba HOM05D004383 ORTHO05D005050 3.9e-75 285.0 168 84.5
FAN02G2967 Fragaria x ananassa HOM05D004383 ORTHO05D005050 5.1e-75 284.6 158 88.0
Os03g0360500 Oryza sativa ssp. japonica HOM05D004383 ORTHO05D005050 1.7e-73 279.6 182 76.4
SEGI_36915 Sequoiadendron giganteum HOM05D004383 ORTHO05D005050 5.3e-72 274.6 178 75.3
Zm00001eb394360 Zea mays HOM05D004383 ORTHO05D005050 7.0e-72 274.2 179 75.4
vmacro11269 Vaccinium macrocarpon HOM05D004383 ORTHO05D005050 1.7e-70 269.6 258 58.1
Dinv10290 Davidia involucrata HOM05D004383 ORTHO05D005050 2.2e-70 269.2 150 89.3
Sc23g0006160 Simmondsia chinensis HOM05D004383 ORTHO05D005050 1.1e-66 256.9 148 86.5
SMO367G0045 Selaginella moellendorffii HOM05D004383 ORTHO05D005050 3.1e-64 248.8 176 69.3
Actinidia10531 Actinidia chinensis HOM05D004383 ORTHO05D005050 2.6e-63 245.7 181 72.4
AagrBONN_evm.TU.Sc2ySwM_368.2778 Anthoceros agrestis HOM05D004383 ORTHO05D005050 1.3e-62 243.4 174 67.2
Mapoly0039s0015 Marchantia polymorpha HOM05D004383 ORTHO05D005050 1.7e-62 243.0 175 66.3
Pp3c18_15950 Physcomitrium patens HOM05D004383 ORTHO05D005050 1.0e-59 233.8 174 65.5
BcaNung06638 Brassica carinata HOM05D004383 ORTHO05D005050 1.2e-50 203.8 134 76.1
CBR_g29297 Chara braunii HOM05D004383 ORTHO05D005050 7.5e-50 201.1 166 59.0
Aqoxy7G03322 Aquilegia oxysepala HOM05D004383 ORTHO05D005050 1.8e-48 196.4 172 62.8
Dinv01903 Davidia involucrata HOM05D004383 ORTHO05D005050 2.0e-42 176.4 100 88.0
TAR383G0062 Trochodendron aralioides HOM05D004383 ORTHO05D005050 2.3e-38 162.9 102 81.4
HPP92_021944 Vanilla planifolia HOM05D004383 ORTHO05D005050 1.5e-37 160.2 116 73.3
HPP92_021971 Vanilla planifolia HOM05D004383 ORTHO05D005050 6.4e-33 144.8 80 88.8
PRCOL_00000905 Prasinoderma coloniale HOM05D004383 ORTHO05D005050 3.0e-30 136.0 169 40.8
MCO09G762 Micromonas commoda HOM05D004383 ORTHO05D005050 1.9e-29 133.3 179 39.7
TAR383G0705 Trochodendron aralioides HOM05D004383 ORTHO05D005050 4.7e-28 128.6 69 88.4
arahy.Tifrunner.gnm1.ann1.76P32W Arachis hypogaea HOM05D004383 ORTHO05D005050 1.3e-25 120.6 75 78.7
arahy.Tifrunner.gnm1.ann1.90HH72 Arachis hypogaea HOM05D004383 ORTHO05D005050 1.3e-25 120.6 75 78.7
CSS0013447 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 7.8e-23 111.3 57 89.5
DCAR_031730 Daucus carota HOM05D004383 ORTHO05D005050 2.3e-22 109.8 100 59.0
CSS0012906 Camellia sinensis var. sinensis HOM05D004383 ORTHO05D005050 4.3e-21 105.5 54 90.7
Medtr8g027900 Medicago truncatula HOM05D000337 ORTHO05D000297 4.7e-20 102.1 51 94.1
Oeu048647.1 Olea europaea HOM05D004383 ORTHO05D005050 4.7e-20 102.1 62 79.0
DCAR_030622 Daucus carota HOM05D001936 ORTHO05D005050 6.8e-19 98.2 83 65.1
Cre07.g351700 Chlamydomonas reinhardtii HOM05D004383 ORTHO05D005050 2.2e-17 93.2 165 34.5
Cfa024789 Carpinus fangiana HOM05D004383 ORTHO05D005050 3.7e-17 92.4 145 37.9
Lalb_Chr15g0080471 Lupinus albus HOM05D004383 ORTHO05D005050 8.6e-14 81.3 90 50.0
Lalb_Chr15g0078021 Lupinus albus HOM05D004383 ORTHO05D005050 1.4e-11 73.9 88 48.9
Atru.chr7.2578 Acer truncatum HOM05D004610 ORTHO05D001148 1.8e-11 73.6 51 72.5
Atru.chr7.2585 Acer truncatum HOM05D004383 ORTHO05D005050 2.4e-11 73.2 49 71.4
arahy.Tifrunner.gnm1.ann1.54XXT5 Arachis hypogaea HOM05D004383 ORTHO05D005050 4.0e-11 72.4 37 91.9
Lalb_Chr10g0093521 Lupinus albus HOM05D004383 ORTHO05D005050 9.9e-10 67.8 38 86.8
RcHm_v2.0_Chr3g0494951 Rosa chinensis HOM05D004383 ORTHO05D005050 1.3e-09 67.4 64 56.2
Lalb_Chr01g0013281 Lupinus albus HOM05D004383 ORTHO05D005050 4.9e-09 65.5 50 66.0
MD10G1133700 Malus domestica HOM05D004383 ORTHO05D005050 1.1e-08 64.3 35 82.9
C03p33160 Brassica napus HOM05D004383 ORTHO05D005050 5.4e-08 62.0 38 71.1
BolC3t15641H Brassica oleracea HOM05D004383 ORTHO05D005050 5.4e-08 62.0 38 71.1
MD10G1176800 Malus domestica HOM05D004383 ORTHO05D005050 5.4e-08 62.0 42 69.0
MD03G1162600 Malus domestica HOM05D004383 ORTHO05D005050 1.0e-06 57.8 43 62.8
BcaB07g33518 Brassica carinata HOM05D001184 ORTHO05D005050 5.1e-06 55.5 43 62.8


User provided reference genes

Program Settings