Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2654 Punica granatum HOM05D007266 ORTHO05D005982 3.2e-220 768.1 372 100.0
Cfa010951 Carpinus fangiana HOM05D007266 ORTHO05D005982 5.5e-47 192.6 352 38.1
Sabra01G0022900 Salix brachista HOM05D007266 ORTHO05D005982 7.1e-47 192.2 393 36.1
Atru.chr12.1311 Acer truncatum HOM05D007266 ORTHO05D005982 2.7e-46 190.3 390 37.2
CiPaw.06G056200 Carya illinoinensis HOM05D007266 ORTHO05D005982 3.0e-45 186.8 320 39.7
Haze_02992 Corylus avellana HOM05D007266 ORTHO05D005982 3.0e-45 186.8 369 36.6
TWI15G1169 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 3.9e-45 186.4 394 34.0
FAN01G0656 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.3e-44 183.3 372 36.6
FAN10G1696 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.3e-44 183.3 367 36.5
RcHm_v2.0_Chr1g0327331 Rosa chinensis HOM05D007266 ORTHO05D005982 3.3e-44 183.3 374 37.4
Eucgr.J00068 Eucalyptus grandis HOM05D007266 ORTHO05D005982 4.3e-44 183.0 361 36.6
FAN06G1886 Fragaria x ananassa HOM05D007266 ORTHO05D005982 3.7e-43 179.9 373 35.9
FvH4_7g03880 Fragaria vesca HOM05D007266 ORTHO05D005982 1.1e-42 178.3 371 37.5
FAN03G0408 Fragaria x ananassa HOM05D007266 ORTHO05D005982 1.1e-42 178.3 372 36.3
CiPaw.14G009500 Carya illinoinensis HOM05D007266 ORTHO05D005982 1.4e-42 177.9 338 37.6
Manes.04G156300 Manihot esculenta HOM05D007266 ORTHO05D005982 1.2e-41 174.9 395 33.4
MD07G1043900 Malus domestica HOM05D007266 ORTHO05D005982 1.7e-40 171.0 361 35.5
Prupe.2G043600 Prunus persica HOM05D007266 ORTHO05D005982 3.8e-40 169.9 363 35.8
Thecc.10G142300 Theobroma cacao HOM05D007266 ORTHO05D005982 6.5e-40 169.1 353 35.4
GSVIVG01036604001 Vitis vinifera HOM05D007266 ORTHO05D005982 1.8e-37 161.0 273 39.2
Potri.001G031800 Populus trichocarpa HOM05D007266 ORTHO05D005982 9.7e-36 155.2 305 36.7
TWI63G1068 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 9.7e-36 155.2 279 37.3
Actinidia01687 Actinidia chinensis HOM05D000639 ORTHO05D007519 1.8e-34 151.0 383 31.6
Manes.11G007700 Manihot esculenta HOM05D007266 ORTHO05D005982 3.1e-34 150.2 331 34.4
vmacro21145 Vaccinium macrocarpon HOM05D007266 ORTHO05D005982 3.4e-33 146.7 388 32.0
TAR633G1403 Trochodendron aralioides HOM05D007266 ORTHO05D005982 4.5e-33 146.4 366 31.7
TWI38G2050 Tripterygium wilfordii HOM05D007266 ORTHO05D005982 7.7e-33 145.6 333 33.0
Actinidia01519 Actinidia chinensis HOM05D007266 ORTHO05D005982 1.1e-31 141.7 336 32.4
COL.COLO4_06637 Corchorus olitorius HOM05D007266 ORTHO05D005982 1.8e-29 134.4 379 29.8
Glyma.15G229400 Glycine max HOM05D007266 ORTHO05D005982 4.4e-28 129.8 331 32.6
TAR369G0213 Trochodendron aralioides HOM05D007266 ORTHO05D005982 7.4e-28 129.0 378 33.1
Glyma.13G191900 Glycine max HOM05D007266 ORTHO05D005982 2.8e-27 127.1 383 31.1
Potri.003G193800 Populus trichocarpa HOM05D007266 ORTHO05D005982 1.1e-26 125.2 226 37.2
Dinv11235 Davidia involucrata HOM05D007266 ORTHO05D005982 1.4e-26 124.8 380 31.1
Hma1.2p1_0837F.1_g226230 Hydrangea macrophylla HOM05D007266 ORTHO05D005982 4.1e-26 123.2 379 29.6
Gorai.009G299100 Gossypium raimondii HOM05D007266 ORTHO05D005982 9.1e-26 122.1 319 31.3
arahy.Tifrunner.gnm1.ann1.E0LNSJ Arachis hypogaea HOM05D007266 ORTHO05D005982 1.5e-25 121.3 396 29.3
Phvul.011G200200 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.5e-25 121.3 332 31.6
Lalb_Chr19g0132921 Lupinus albus HOM05D007266 ORTHO05D005982 2.6e-25 120.6 325 30.8
Sabra03G0144500 Salix brachista HOM05D007266 ORTHO05D005982 3.4e-25 120.2 488 26.6
Rhsim01G0124500 Rhododendron simsii HOM05D007266 ORTHO05D005982 5.9e-25 119.4 331 31.4
Glyma.04G133400 Glycine max HOM05D007266 ORTHO05D005982 7.7e-25 119.0 380 30.0
Nitab4.5_0002838g0050 Nicotiana tabacum HOM05D007266 ORTHO05D005982 2.2e-24 117.5 312 31.7
Duzib128G0414 Durio zibethinus HOM05D007266 ORTHO05D005982 6.5e-24 115.9 395 28.4
Lj3g0024959 Lotus japonicus HOM05D007266 ORTHO05D005982 1.4e-23 114.8 335 31.9
Gohir.A05G283500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 5.5e-23 112.8 316 30.1
Medtr8g040640 Medicago truncatula HOM05D007266 ORTHO05D005982 5.5e-23 112.8 311 32.5
Ca_24011_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.1e-22 110.9 307 33.2
Ca_24018_v3 Cicer arietinum L. HOM05D007266 ORTHO05D005982 2.1e-22 110.9 307 33.2
TPR.G8521 Trifolium pratense HOM05D007266 ORTHO05D005982 2.1e-22 110.9 305 31.5
VMungo1127G1999 Vigna mungo HOM05D007266 ORTHO05D005982 2.1e-22 110.9 355 30.1
FAN03G2213 Fragaria x ananassa HOM05D007266 ORTHO05D005982 2.7e-22 110.5 165 40.6
Glyma.11G158200 Glycine max HOM05D007266 ORTHO05D005982 3.6e-22 110.2 229 35.8
Cpa.g.sc169.34 Carica papaya HOM05D007266 ORTHO05D005982 4.7e-22 109.8 399 26.8
arahy.Tifrunner.gnm1.ann1.5HCQ47 Arachis hypogaea HOM05D007266 ORTHO05D005982 3.9e-21 106.7 380 27.6
QL04p021455 Quercus lobata HOM05D007266 ORTHO05D005982 3.9e-21 106.7 196 37.8
QL07p029255 Quercus lobata HOM05D007266 ORTHO05D005982 3.9e-21 106.7 196 37.8
Nitab4.5_0004168g0140 Nicotiana tabacum HOM05D007266 ORTHO05D005982 5.2e-21 106.3 315 29.8
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 7.4e-20 102.4 260 30.0
Oeu013066.1 Olea europaea HOM05D007266 ORTHO05D005982 9.7e-20 102.1 323 31.0
Phvul.005G018800 Phaseolus vulgaris HOM05D007266 ORTHO05D005982 1.3e-19 101.7 366 29.0
arahy.Tifrunner.gnm1.ann1.IJY9PN Arachis hypogaea HOM05D007266 ORTHO05D005982 2.8e-19 100.5 297 31.3
Ciclev10001901m.g Citrus clementina HOM05D007266 ORTHO05D005982 8.2e-19 99.0 253 30.8
QL04p021458 Quercus lobata HOM05D007266 ORTHO05D005982 8.2e-19 99.0 114 52.6
QL07p029253 Quercus lobata HOM05D007266 ORTHO05D005982 8.2e-19 99.0 114 52.6
VMungo1080G1603 Vigna mungo HOM05D007266 ORTHO05D005982 1.4e-18 98.2 348 29.0
Hund13391 Selenicereus undatus HOM05D007266 ORTHO05D005982 1.6e-17 94.7 401 27.9
arahy.Tifrunner.gnm1.ann1.78H5KP Arachis hypogaea HOM05D007266 ORTHO05D005982 2.0e-17 94.4 143 43.4
CANSAT56G2989 Cannabis sativa HOM05D007266 ORTHO05D005982 2.6e-17 94.0 314 27.7
Psat4g144600 Pisum sativum HOM05D007266 ORTHO05D005982 3.5e-17 93.6 308 31.2
DCAR_029711 Daucus carota HOM05D007266 ORTHO05D005982 5.9e-17 92.8 370 27.3
Sopen01g040350 Solanum pennellii HOM05D007266 ORTHO05D005982 7.7e-17 92.4 334 28.4
PGSC0003DMG402003286 Solanum tuberosum HOM05D007266 ORTHO05D005982 1.3e-16 91.7 312 28.2
Lj9C658G11 Lonicera japonica HOM05D007266 ORTHO05D005982 5.0e-16 89.7 229 28.8
THA.LOC104799328 Tarenaya hassleriana HOM05D008873 ORTHO05D005982 5.0e-16 89.7 325 27.7
Migut.B01189 Erythranthe guttata HOM05D007266 ORTHO05D005982 1.1e-15 88.6 324 27.5
Gohir.D05G284500 Gossypium hirsutum HOM05D007266 ORTHO05D005982 1.5e-15 88.2 101 47.5
EL10Ac2g02761 Beta vulgaris HOM05D007266 ORTHO05D005982 8.0e-14 82.4 405 26.9
TAR623G0806 Trochodendron aralioides HOM05D007266 ORTHO05D005982 1.4e-13 81.6 149 38.9
Lalb_Chr01g0007431 Lupinus albus HOM05D007266 ORTHO05D005982 4.0e-13 80.1 112 43.8
Oeu058685.1 Olea europaea HOM05D007266 ORTHO05D005982 6.7e-13 79.3 318 29.6
BcaB04g21084 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-12 78.6 309 29.1
BcaB04g21086 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-12 78.6 309 29.1
Thhalv10021314m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 1.2e-12 78.6 300 28.7
AUR62031740 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.6e-12 77.4 387 26.4
HanXRQChr05g0146291 Helianthus annuus HOM05D007266 ORTHO05D005982 1.3e-11 75.1 315 25.7
SGA_v2.0_scaffold124G33643 Striga asiatica HOM05D007266 ORTHO05D005982 1.3e-11 75.1 116 44.0
Peaxi162Scf00220g00313 Petunia axillaris HOM05D007266 ORTHO05D005982 2.8e-11 73.9 116 42.2
AT3G12320 Arabidopsis thaliana HOM05D008873 ORTHO05D005982 3.7e-11 73.6 301 28.6
Carub.0006s0591 Capsella rubella HOM05D008873 ORTHO05D005982 3.7e-11 73.6 299 27.8
CARHR086860 Cardamine hirsuta HOM05D008873 ORTHO05D005982 3.7e-11 73.6 300 27.3
Thhalv10014291m.g Eutrema salsugineum HOM05D008873 ORTHO05D005982 3.7e-11 73.6 302 26.5
CSS0040931 Camellia sinensis var. sinensis HOM05D007266 ORTHO05D005982 4.8e-11 73.2 201 32.3
Carub.0003s1168 Capsella rubella HOM05D008873 ORTHO05D005982 8.2e-11 72.4 301 27.6
AL3G23970 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 1.4e-10 71.6 300 28.0
Nn7g36823 Nelumbo nucifera HOM05D007266 ORTHO05D005982 1.4e-10 71.6 261 27.2
Ah.10g030010 Amaranthus hybridus HOM05D007266 ORTHO05D005982 2.4e-10 70.9 318 27.0
BcaC05g29270 Brassica carinata HOM05D008873 ORTHO05D005982 2.4e-10 70.9 300 29.0
Ah.12g065060 Amaranthus hybridus HOM05D007266 ORTHO05D005982 3.1e-10 70.5 362 25.1
HanXRQChr11g0341241 Helianthus annuus HOM05D007266 ORTHO05D005982 4.1e-10 70.1 236 28.4
Sp3g10530 Schrenkiella parvula HOM05D008873 ORTHO05D005982 4.1e-10 70.1 300 27.3
Solyc01g096630.3 Solanum lycopersicum HOM05D007266 ORTHO05D005982 5.3e-10 69.7 91 44.0
C05p55490 Brassica napus HOM05D008873 ORTHO05D005982 7.0e-10 69.3 300 29.0
Aa31LG3G6540 Aethionema arabicum HOM05D008873 ORTHO05D005982 1.2e-09 68.6 299 29.1
MBI13_g09214_MAGBIO Magnolia biondii HOM05D007266 ORTHO05D005982 1.2e-09 68.6 307 26.4
AUR62032625 Chenopodium quinoa HOM05D007266 ORTHO05D005982 2.0e-09 67.8 245 28.2
BolC5t34215H Brassica oleracea HOM05D008873 ORTHO05D005982 2.7e-09 67.4 128 38.3
Lsat_1_v5_gn_1_118261 Lactuca sativa HOM05D007266 ORTHO05D005982 2.7e-09 67.4 283 25.4
AL6G17140 Arabidopsis lyrata HOM05D008873 ORTHO05D005982 4.5e-09 66.6 299 27.4
Lj3g0005568 Lotus japonicus HOM05D007266 ORTHO05D005982 4.5e-09 66.6 254 28.0
PSO384G1467 Papaver somniferum HOM05D007266 ORTHO05D005982 4.5e-09 66.6 151 33.8
Aqoxy1G00397_Aqoxy1G00398 Aquilegia oxysepala HOM05D007266 ORTHO05D005982 1.0e-08 65.5 228 26.3
SalBow5G4193 Salvia bowleyana HOM05D007266 ORTHO05D005982 1.0e-08 65.5 298 25.2
PSO135G0681 Papaver somniferum HOM05D007266 ORTHO05D005982 1.7e-08 64.7 173 32.4
Dinv32008 Davidia involucrata HOM05D007266 ORTHO05D005982 2.2e-08 64.3 186 30.1
Sp6g35890 Schrenkiella parvula HOM05D008873 ORTHO05D005982 2.2e-08 64.3 310 26.1
BcaC01g04052 Brassica carinata HOM05D008873 ORTHO05D005982 3.8e-08 63.5 229 30.1
A03p37600 Brassica napus HOM05D008873 ORTHO05D005982 3.8e-08 63.5 229 28.8
C03p45590 Brassica napus HOM05D008873 ORTHO05D005982 3.8e-08 63.5 229 30.1
BolC3t16836H Brassica oleracea HOM05D008873 ORTHO05D005982 3.8e-08 63.5 229 30.1
BraA03t12914Z Brassica rapa HOM05D008873 ORTHO05D005982 3.8e-08 63.5 229 30.1
A05p37060 Brassica napus HOM05D008873 ORTHO05D005982 6.5e-08 62.8 300 28.7
BraA05t22503Z Brassica rapa HOM05D008873 ORTHO05D005982 1.5e-07 61.6 220 30.9
C09p69120 Brassica napus HOM05D008873 ORTHO05D005982 1.9e-07 61.2 322 25.5
A10p28780 Brassica napus HOM05D008873 ORTHO05D005982 2.5e-07 60.8 222 29.3
BolC9t59656H Brassica oleracea HOM05D008873 ORTHO05D005982 2.5e-07 60.8 322 26.4
BraA10t44925Z Brassica rapa HOM05D008873 ORTHO05D005982 2.5e-07 60.8 222 29.3
Gorai.009G296300 Gossypium raimondii HOM05D004414 ORTHO05D001824 2.5e-07 60.8 197 29.4
SHI11361 Sapria himalayana HOM05D000436 ORTHO05D000678 3.2e-07 60.5 168 31.0
CARHR206160 Cardamine hirsuta HOM05D008873 ORTHO05D005982 5.5e-07 59.7 101 38.6
Gohir.A05G280800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 5.5e-07 59.7 197 28.4
Gohir.D05G282800 Gossypium hirsutum HOM05D004414 ORTHO05D001824 5.5e-07 59.7 197 28.9
CSS0012064 Camellia sinensis var. sinensis HOM05D003662 ORTHO05D001824 9.4e-07 58.9 147 29.9
TWI23G0811 Tripterygium wilfordii HOM05D003662 ORTHO05D001824 9.4e-07 58.9 143 29.4
BcaC06g32527 Brassica carinata HOM05D008873 ORTHO05D005982 1.2e-06 58.5 223 29.6
ECA248G2125 Erigeron canadensis HOM05D007266 ORTHO05D005982 1.2e-06 58.5 266 26.3
PSO447G0309 Papaver somniferum HOM05D003662 ORTHO05D001824 1.6e-06 58.2 94 38.3
BcaNung04207 Brassica carinata HOM05D008873 ORTHO05D005982 2.1e-06 57.8 270 27.0
CSS0028207 Camellia sinensis var. sinensis HOM05D004414 ORTHO05D001824 3.6e-06 57.0 139 31.7
Hma1.2p1_0704F.1_g206720 Hydrangea macrophylla HOM05D003662 ORTHO05D001824 3.6e-06 57.0 191 27.2
Oeu026157.1 Olea europaea HOM05D003662 ORTHO05D001824 4.7e-06 56.6 137 29.9
BcaB01g05709 Brassica carinata HOM05D008873 ORTHO05D005982 8.0e-06 55.8 107 38.3
BcaB04g18684 Brassica carinata HOM05D008873 ORTHO05D005982 8.0e-06 55.8 136 33.8


User provided reference genes

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