Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2651 Punica granatum HOM05D012764 ORTHO05D010674 0.0e+00 3986.4 2146 100.0
Cfa018307 Carpinus fangiana HOM05D015223 ORTHO05D010674 3.0e-20 106.3 330 33.6
CiPaw.16G010100 Carya illinoinensis HOM05D015223 ORTHO05D010674 8.6e-20 104.8 529 27.0
AUR62026679 Chenopodium quinoa HOM05D018884 ORTHO05D010674 1.8e-17 97.1 140 42.1
Thecc.08G155200 Theobroma cacao HOM05D013130 ORTHO05D022454 1.8e-17 97.1 392 27.6
RcHm_v2.0_Chr6g0274911 Rosa chinensis HOM05D012764 ORTHO05D017940 4.0e-17 95.9 152 40.1
AUR62040588 Chenopodium quinoa HOM05D018884 ORTHO05D010674 2.0e-16 93.6 126 46.8
Haze_17782 Corylus avellana HOM05D015223 ORTHO05D010674 3.4e-16 92.8 574 27.2
Gohir.D05G245401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 4.4e-16 92.4 526 28.1
EL10Ac1g01580 Beta vulgaris HOM05D018884 ORTHO05D010674 4.9e-15 89.0 141 41.8
Gorai.009G255200 Gossypium raimondii HOM05D013130 ORTHO05D022454 6.4e-15 88.6 517 27.5
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 8.4e-15 88.2 98 49.0
Duzib116G0432 Durio zibethinus HOM05D013130 ORTHO05D022454 8.4e-15 88.2 470 25.7
FAN27G3106 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.4e-14 87.4 212 34.4
CANSAT25G2759 Cannabis sativa HOM05D013130 ORTHO05D010674 1.9e-14 87.0 234 30.8
FAN20G3084 Fragaria x ananassa HOM05D012764 ORTHO05D017940 2.4e-14 86.7 216 33.8
Gohir.A05G244401 Gossypium hirsutum HOM05D013130 ORTHO05D022454 2.4e-14 86.7 604 27.0
DCAR_001148 Daucus carota HOM05D033900 ORTHO05D010674 4.2e-14 85.9 135 39.3
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 9.3e-14 84.7 129 43.4
HanXRQChr11g0343441 Helianthus annuus HOM05D011323 ORTHO05D010674 2.1e-13 83.6 198 30.8
Aa31LG4G6810 Aethionema arabicum HOM05D010491 ORTHO05D012559 2.7e-13 83.2 89 52.8
Nitab4.5_0001344g0010 Nicotiana tabacum HOM05D011323 ORTHO05D010674 2.7e-13 83.2 103 51.5
FAN24G2902 Fragaria x ananassa HOM05D012764 ORTHO05D017940 4.6e-13 82.4 221 33.0
FAN15G3692 Fragaria x ananassa HOM05D012764 ORTHO05D017940 1.3e-12 80.9 218 32.1
Nitab4.5_0001187g0020 Nicotiana tabacum HOM05D011323 ORTHO05D010674 2.3e-12 80.1 103 50.5
Glyma.02G080700 Glycine max HOM05D028233 ORTHO05D015681 3.0e-12 79.7 66 62.1
FvH4_2g13370 Fragaria vesca HOM05D012764 ORTHO05D017940 5.1e-12 79.0 390 27.4
Peaxi162Scf00079g00245 Petunia axillaris HOM05D011323 ORTHO05D010674 1.9e-11 77.0 169 37.9
Oeu051274.3 Olea europaea HOM05D027784 ORTHO05D010674 2.5e-11 76.6 163 38.0
Glyma.16G165600 Glycine max HOM05D028233 ORTHO05D015681 3.3e-11 76.3 47 78.7
MD05G1029500 Malus domestica HOM05D012764 ORTHO05D017940 3.3e-11 76.3 346 30.1
SalBow7G1875 Salvia bowleyana HOM05D027784 ORTHO05D010674 3.3e-11 76.3 435 27.6
arahy.Tifrunner.gnm1.ann1.R835TB Arachis hypogaea HOM05D053442 ORTHO05D010674 5.6e-11 75.5 130 40.8
Carub.0002s2365 Capsella rubella HOM05D010491 ORTHO05D012559 5.6e-11 75.5 57 64.9
Sabra02G0052900 Salix brachista HOM05D015223 ORTHO05D037420 5.6e-11 75.5 322 29.5
Potri.002G066450 Populus trichocarpa HOM05D015223 ORTHO05D037420 7.3e-11 75.1 745 24.7
Phvul.004G092800 Phaseolus vulgaris HOM05D028233 ORTHO05D015681 9.6e-11 74.7 47 78.7
Prupe.8G035200 Prunus persica HOM05D012764 ORTHO05D017940 9.6e-11 74.7 476 26.7
Hund26684 Selenicereus undatus HOM05D011323 ORTHO05D010674 1.3e-10 74.3 196 34.2
CARHR070280 Cardamine hirsuta HOM05D010491 ORTHO05D012559 1.6e-10 73.9 212 34.0
ECA247G3667 Erigeron canadensis HOM05D011323 ORTHO05D010674 1.6e-10 73.9 127 37.8
Thhalv10018017m.g Eutrema salsugineum HOM05D010491 ORTHO05D012559 1.6e-10 73.9 246 32.5
Migut.C00977 Erythranthe guttata HOM05D027784 ORTHO05D010674 2.1e-10 73.6 262 31.3
Psat1g100480 Pisum sativum HOM05D014873 ORTHO05D015681 3.6e-10 72.8 56 64.3
arahy.Tifrunner.gnm1.ann1.UU4M73 Arachis hypogaea HOM05D053442 ORTHO05D010674 6.2e-10 72.0 130 40.0
Manes.02G181350 Manihot esculenta HOM05D015223 ORTHO05D010674 8.1e-10 71.6 189 34.9
VMungo0464G2099 Vigna mungo HOM05D028233 ORTHO05D012559 8.1e-10 71.6 41 80.5
Atru.chr13.2071 Acer truncatum HOM05D036810 ORTHO05D030759 1.1e-09 71.2 473 26.6
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 1.8e-09 70.5 261 31.8
Potri.005G194350 Populus trichocarpa HOM05D015223 ORTHO05D037420 1.8e-09 70.5 240 30.8
Lj7A375T60 Lonicera japonica HOM05D011323 ORTHO05D010674 3.1e-09 69.7 109 42.2
BcaB02g07074 Brassica carinata HOM05D010491 ORTHO05D012559 4.0e-09 69.3 88 45.5
BolC6t38310H Brassica oleracea HOM05D010491 ORTHO05D012559 4.0e-09 69.3 43 72.1
A07p28380 Brassica napus HOM05D010491 ORTHO05D012559 5.3e-09 68.9 43 72.1
BraA07t30474Z Brassica rapa HOM05D010491 ORTHO05D012559 5.3e-09 68.9 43 72.1
RcHm_v2.0_Chr6g0274831 Rosa chinensis HOM05D012764 ORTHO05D010674 5.3e-09 68.9 181 34.3
C06p31820 Brassica napus HOM05D010491 ORTHO05D012559 1.2e-08 67.8 106 40.6
BcaC08g45512 Brassica carinata HOM05D010491 ORTHO05D012559 1.5e-08 67.4 98 41.8
Solyc04g071660.3 Solanum lycopersicum HOM05D011323 ORTHO05D010674 1.5e-08 67.4 517 26.3
THA.LOC104812032 Tarenaya hassleriana HOM05D010491 ORTHO05D010674 2.6e-08 66.6 372 27.7
Lsat_1_v5_gn_1_4921 Lactuca sativa HOM05D011323 ORTHO05D010674 4.5e-08 65.9 140 36.4
C06p50950 Brassica napus HOM05D010491 ORTHO05D012559 5.8e-08 65.5 272 29.4
BraA07t31765Z Brassica rapa HOM05D010491 ORTHO05D012559 5.8e-08 65.5 221 29.9
Nn1g06053 Nelumbo nucifera HOM05D011323 ORTHO05D010674 5.8e-08 65.5 279 32.6
SGA_v2.0_scaffold108G30881 Striga asiatica HOM05D001241 ORTHO05D010674 5.8e-08 65.5 148 33.8
Sopen04g027650 Solanum pennellii HOM05D011323 ORTHO05D010674 7.6e-08 65.1 518 26.1
Sp5g31880 Schrenkiella parvula HOM05D010491 ORTHO05D012559 6.4e-07 62.0 198 31.8
A07p42390 Brassica napus HOM05D010491 ORTHO05D012559 1.1e-06 61.2 395 25.3
Medtr6g043630 Medicago truncatula HOM05D014873 ORTHO05D015681 1.1e-06 61.2 72 51.4
MSTRG.1096 Avicennia marina HOM05D027784 ORTHO05D010674 1.9e-06 60.5 289 30.1
FvH4_2g13360 Fragaria vesca HOM05D012764 ORTHO05D017940 3.2e-06 59.7 73 46.6
FAN24G0895 Fragaria x ananassa HOM05D012764 ORTHO05D010674 5.4e-06 58.9 178 33.1
SEGI_16647 Sequoiadendron giganteum HOM05D019055 ORTHO05D018353 7.1e-06 58.5 43 62.8
C02p32810 Brassica napus HOM05D004106 ORTHO05D004381 9.3e-06 58.2 66 43.9


User provided reference genes

Program Settings