Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2650 Punica granatum HOM05D002211 ORTHO05D002206 6.1e-77 290.8 154 100.0
Manes.12G053700 Manihot esculenta HOM05D002211 ORTHO05D002206 1.6e-16 90.1 145 43.4
Potri.002G250800 Populus trichocarpa HOM05D002211 ORTHO05D002206 5.6e-14 81.6 145 37.9
COL.COLO4_38590 Corchorus olitorius HOM05D002211 ORTHO05D002206 1.1e-12 77.4 144 37.5
Actinidia30019 Actinidia chinensis HOM05D002211 ORTHO05D002206 1.8e-12 76.6 140 41.4
Ciclev10017076m.g Citrus clementina HOM05D002211 ORTHO05D002206 1.8e-12 76.6 144 42.4
Haze_23452 Corylus avellana HOM05D002211 ORTHO05D002206 2.4e-12 76.3 145 40.7
Glyma.13G008000 Glycine max HOM05D002211 ORTHO05D002206 3.1e-12 75.9 151 41.7
Gorai.001G228600 Gossypium raimondii HOM05D002211 ORTHO05D002206 3.1e-12 75.9 144 36.8
Gohir.A07G196800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 4.0e-12 75.5 144 35.4
Gohir.D07G203200 Gossypium hirsutum HOM05D002211 ORTHO05D002206 4.0e-12 75.5 144 36.8
Manes.13G054300 Manihot esculenta HOM05D002211 ORTHO05D002206 4.0e-12 75.5 145 35.2
TWI36G0467 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 4.0e-12 75.5 145 37.9
VMungo0331G1849 Vigna mungo HOM05D002211 ORTHO05D002206 6.9e-12 74.7 145 36.6
Glyma.03G089800 Glycine max HOM05D002211 ORTHO05D002206 9.0e-12 74.3 145 36.6
Thecc.01G211400 Theobroma cacao HOM05D002211 ORTHO05D002206 1.2e-11 73.9 145 37.2
Phvul.010G031300 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 1.5e-11 73.6 145 39.3
RcHm_v2.0_Chr6g0282871 Rosa chinensis HOM05D002211 ORTHO05D002206 2.0e-11 73.2 150 38.0
CANSAT01G1044 Cannabis sativa HOM05D002211 ORTHO05D002206 4.5e-11 72.0 153 39.9
Dinv28814 Davidia involucrata HOM05D002211 ORTHO05D002206 5.8e-11 71.6 140 38.6
FAN24G0249 Fragaria x ananassa HOM05D002211 ORTHO05D002206 5.8e-11 71.6 150 37.3
FvH4_2g17840 Fragaria vesca HOM05D002211 ORTHO05D002206 7.6e-11 71.2 150 37.3
CiPaw.13G055000 Carya illinoinensis HOM05D002211 ORTHO05D002206 9.9e-11 70.9 148 40.5
Lj3g0001912 Lotus japonicus HOM05D002211 ORTHO05D002206 9.9e-11 70.9 147 36.1
Duzib138G0235 Durio zibethinus HOM05D002211 ORTHO05D002206 1.3e-10 70.5 145 38.6
QL09p046170 Quercus lobata HOM05D002211 ORTHO05D002206 1.3e-10 70.5 144 36.8
CiPaw.14G043400 Carya illinoinensis HOM05D002211 ORTHO05D002206 2.9e-10 69.3 143 35.7
Gohir.D07G167000 Gossypium hirsutum HOM05D002211 ORTHO05D002206 3.8e-10 68.9 143 37.1
Gohir.A11G142300 Gossypium hirsutum HOM05D002211 ORTHO05D002206 8.4e-10 67.8 145 33.8
Gorai.007G159300 Gossypium raimondii HOM05D002211 ORTHO05D002206 8.4e-10 67.8 145 36.6
Prupe.8G190600 Prunus persica HOM05D002211 ORTHO05D002206 8.4e-10 67.8 144 34.0
CSS0050270 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 1.1e-09 67.4 144 41.7
Gohir.D11G148600 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.4e-09 67.0 145 37.2
Gorai.N003500 Gossypium raimondii HOM05D002211 ORTHO05D002206 1.4e-09 67.0 145 35.9
MD05G1159900 Malus domestica HOM05D002211 ORTHO05D002206 1.4e-09 67.0 149 38.3
VMungo1383G1511 Vigna mungo HOM05D002211 ORTHO05D002206 1.4e-09 67.0 145 33.1
HanXRQChr16g0507881 Helianthus annuus HOM05D002211 ORTHO05D002206 1.9e-09 66.6 143 39.2
Psat4g206640 Pisum sativum HOM05D002211 ORTHO05D002206 1.9e-09 66.6 148 37.2
Hund09466 Selenicereus undatus HOM05D002211 ORTHO05D002206 2.4e-09 66.2 149 40.3
Eucgr.K02089 Eucalyptus grandis HOM05D002211 ORTHO05D002206 5.5e-09 65.1 140 35.0
Glyma.08G344400 Glycine max HOM05D002211 ORTHO05D002206 5.5e-09 65.1 152 37.5
Lalb_Chr03g0041111 Lupinus albus HOM05D002211 ORTHO05D002206 5.5e-09 65.1 143 37.1
Gohir.A07G159400 Gossypium hirsutum HOM05D002211 ORTHO05D002206 1.2e-08 63.9 145 37.9
Lsat_1_v5_gn_9_16221 Lactuca sativa HOM05D002211 ORTHO05D002206 1.6e-08 63.5 159 37.7
TAR362G0774 Trochodendron aralioides HOM05D002211 ORTHO05D002206 1.6e-08 63.5 145 33.8
DCAR_018626 Daucus carota HOM05D002211 ORTHO05D002206 2.1e-08 63.2 151 37.1
Glyma.18G152300 Glycine max HOM05D002211 ORTHO05D002206 2.1e-08 63.2 151 37.7
Cpa.g.sc51.66 Carica papaya HOM05D002211 ORTHO05D002206 2.7e-08 62.8 161 34.2
FAN02G1834 Fragaria x ananassa HOM05D002211 ORTHO05D002206 2.7e-08 62.8 89 44.9
Lalb_Chr07g0194521 Lupinus albus HOM05D002211 ORTHO05D002206 2.7e-08 62.8 145 35.2
Medtr8g011470 Medicago truncatula HOM05D002211 ORTHO05D002206 2.7e-08 62.8 140 36.4
CSS0000478 Camellia sinensis var. sinensis HOM05D002211 ORTHO05D002206 3.5e-08 62.4 150 33.3
Cpa.g.sc8.75 Carica papaya HOM05D002211 ORTHO05D002206 3.5e-08 62.4 145 40.0
Sed0022694 Sechium edule HOM05D002211 ORTHO05D002206 3.5e-08 62.4 143 32.9
FAN27G0804 Fragaria x ananassa HOM05D002211 ORTHO05D002206 4.6e-08 62.0 136 35.3
Lalb_Chr01g0022001 Lupinus albus HOM05D002211 ORTHO05D002206 4.6e-08 62.0 141 32.6
Aqoxy5G00111 Aquilegia oxysepala HOM05D002211 ORTHO05D002206 6.0e-08 61.6 146 32.9
FvH4_6g01210 Fragaria vesca HOM05D002211 ORTHO05D002206 6.0e-08 61.6 171 32.2
Actinidia23360 Actinidia chinensis HOM05D002211 ORTHO05D002206 7.9e-08 61.2 133 39.1
FAN05G2499 Fragaria x ananassa HOM05D002211 ORTHO05D002206 7.9e-08 61.2 176 30.1
MD10G1152300 Malus domestica HOM05D002211 ORTHO05D002206 7.9e-08 61.2 148 32.4
MSTRG.17972 Avicennia marina HOM05D002211 ORTHO05D002206 1.0e-07 60.8 150 36.0
FAN15G0122 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.0e-07 60.8 133 33.8
Atru.chr6.3550 Acer truncatum HOM05D002211 ORTHO05D002206 1.3e-07 60.5 136 38.2
FAN05G1779 Fragaria x ananassa HOM05D002211 ORTHO05D002206 1.3e-07 60.5 169 33.1
Dinv10434 Davidia involucrata HOM05D002211 ORTHO05D002206 2.3e-07 59.7 157 35.7
Lj1g0027803 Lotus japonicus HOM05D002211 ORTHO05D002206 3.0e-07 59.3 147 34.7
PGSC0003DMG400006602 Solanum tuberosum HOM05D002211 ORTHO05D002206 3.0e-07 59.3 150 40.0
Eucgr.H00728 Eucalyptus grandis HOM05D002211 ORTHO05D002206 3.9e-07 58.9 149 34.2
MSTRG.18492 Avicennia marina HOM05D002211 ORTHO05D002206 5.1e-07 58.5 145 36.6
Gohir.A11G241500 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.7e-07 58.2 36 75.0
Gohir.D11G250800 Gossypium hirsutum HOM05D002211 ORTHO05D002206 6.7e-07 58.2 36 75.0
Thecc.05G260900 Theobroma cacao HOM05D002211 ORTHO05D002206 6.7e-07 58.2 36 75.0
MSTRG.21304 Avicennia marina HOM05D002211 ORTHO05D002206 8.7e-07 57.8 144 34.0
Phvul.008G137200 Phaseolus vulgaris HOM05D002211 ORTHO05D002206 8.7e-07 57.8 150 36.7
TWI60G0660 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 8.7e-07 57.8 42 73.8
arahy.Tifrunner.gnm1.ann1.0TX68Y Arachis hypogaea HOM05D002211 ORTHO05D002206 1.1e-06 57.4 148 33.1
arahy.Tifrunner.gnm1.ann1.PCV855 Arachis hypogaea HOM05D002211 ORTHO05D002206 1.1e-06 57.4 148 33.1
ECA247G4066 Erigeron canadensis HOM05D002211 ORTHO05D002206 1.1e-06 57.4 154 36.4
TWI32G0781 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 1.1e-06 57.4 36 75.0
MELO3C008671.2 Cucumis melo HOM05D002211 ORTHO05D002206 1.5e-06 57.0 37 67.6
CsaV3_2G010180 Cucumis sativus L. HOM05D002211 ORTHO05D002206 1.5e-06 57.0 37 67.6
MD12G1253400 Malus domestica HOM05D002211 ORTHO05D002206 1.5e-06 57.0 36 72.2
Duzib106G0223 Durio zibethinus HOM05D002211 ORTHO05D002206 1.9e-06 56.6 36 72.2
PSO017G2189 Papaver somniferum HOM05D002211 ORTHO05D002206 1.9e-06 56.6 37 70.3
PSO675G4717 Papaver somniferum HOM05D002211 ORTHO05D002206 1.9e-06 56.6 37 70.3
AT5G48500 Arabidopsis thaliana HOM05D002211 ORTHO05D002206 2.5e-06 56.2 147 32.7
CANSAT54G2545 Cannabis sativa HOM05D002211 ORTHO05D002206 2.5e-06 56.2 41 61.0
DCAR_012692 Daucus carota HOM05D002211 ORTHO05D002206 2.5e-06 56.2 143 35.0
Solyc06g083080.3 Solanum lycopersicum HOM05D002211 ORTHO05D002206 3.3e-06 55.8 151 34.4
Sopen06g034470 Solanum pennellii HOM05D002211 ORTHO05D002206 3.3e-06 55.8 151 34.4
AL8G21370 Arabidopsis lyrata HOM05D002211 ORTHO05D002206 4.3e-06 55.5 147 32.7
CiPaw.07G075600 Carya illinoinensis HOM05D002211 ORTHO05D002206 4.3e-06 55.5 160 30.6
COL.COLO4_20545 Corchorus olitorius HOM05D002211 ORTHO05D002206 4.3e-06 55.5 173 30.6
MBI07_g09899_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 4.3e-06 55.5 38 68.4
MBI07_g44687_MAGBIO Magnolia biondii HOM05D002211 ORTHO05D002206 4.3e-06 55.5 38 68.4
Psat3g151120 Pisum sativum HOM05D002211 ORTHO05D002206 4.3e-06 55.5 147 29.9
Potri.013G052600 Populus trichocarpa HOM05D002211 ORTHO05D002206 4.3e-06 55.5 162 32.7
RcHm_v2.0_Chr3g0448791 Rosa chinensis HOM05D002211 ORTHO05D002206 4.3e-06 55.5 170 30.0
Nn5g27522 Nelumbo nucifera HOM05D002211 ORTHO05D002206 5.6e-06 55.1 157 33.8
TWI18G0790 Tripterygium wilfordii HOM05D002211 ORTHO05D002206 5.6e-06 55.1 144 32.6
AUR62008124 Chenopodium quinoa HOM05D002211 ORTHO05D002206 7.4e-06 54.7 151 32.5
ClCG09G008150 Citrullus lanatus HOM05D002211 ORTHO05D002206 7.4e-06 54.7 145 33.8
HanXRQChr08g0231451 Helianthus annuus HOM05D002211 ORTHO05D002206 7.4e-06 54.7 151 36.4
Psat0s3509g0040 Pisum sativum HOM05D002211 ORTHO05D002206 9.6e-06 54.3 167 29.3
Rhsim13G0052500 Rhododendron simsii HOM05D002211 ORTHO05D002206 9.6e-06 54.3 130 35.4
THA.LOC104827277 Tarenaya hassleriana HOM05D002211 ORTHO05D002206 9.6e-06 54.3 39 66.7


User provided reference genes

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