Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 9.6e-62 240.0 120 100.0
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 7.7e-43 177.2 116 78.4
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 9.7e-22 107.1 108 55.6
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 2.4e-20 102.4 111 52.3
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.6e-19 99.8 119 49.6
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 4.5e-19 98.2 97 54.6
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 1.7e-18 96.3 108 51.9
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.7e-18 96.3 108 51.9
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 3.8e-18 95.1 108 51.9
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 6.5e-18 94.4 114 50.0
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 1.1e-17 93.6 108 51.9
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 1.9e-17 92.8 92 57.6
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 4.2e-17 91.7 118 48.3
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 5.5e-17 91.3 98 53.1
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 5.5e-17 91.3 108 50.0
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 1.6e-16 89.7 89 51.7
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 2.1e-16 89.4 91 53.8
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 2.1e-16 89.4 107 48.6
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 2.7e-16 89.0 109 50.5
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 3.6e-16 88.6 95 55.8
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 3.6e-16 88.6 114 50.9
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 4.7e-16 88.2 92 55.4
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 4.7e-16 88.2 86 50.0
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 6.1e-16 87.8 96 51.0
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 6.1e-16 87.8 91 53.8
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 6.1e-16 87.8 89 50.6
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.0e-16 87.4 95 54.7
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.0e-16 87.4 95 54.7
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 8.0e-16 87.4 108 49.1
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 1.4e-15 86.7 89 51.7
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.8e-15 86.3 99 50.5
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 1.8e-15 86.3 109 48.6
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.3e-15 85.9 92 52.2
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 2.3e-15 85.9 90 50.0
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 2.3e-15 85.9 102 51.0
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 2.3e-15 85.9 91 51.6
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 3.0e-15 85.5 109 47.7
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 3.0e-15 85.5 93 53.8
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 6.8e-15 84.3 98 50.0
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 6.8e-15 84.3 111 47.7
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 8.8e-15 84.0 90 48.9
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 8.8e-15 84.0 86 57.0
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 1.2e-14 83.6 88 54.5
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 1.5e-14 83.2 99 46.5
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.6e-14 82.4 92 51.1
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.4e-14 81.6 92 51.1
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 5.7e-14 81.3 118 44.9
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 5.7e-14 81.3 88 50.0
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 5.7e-14 81.3 92 51.1
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 7.5e-14 80.9 115 46.1
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 7.5e-14 80.9 93 48.4
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 7.5e-14 80.9 102 47.1
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.3e-13 80.1 95 49.5
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.3e-13 80.1 89 50.6
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 2.2e-13 79.3 89 52.8
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.8e-13 79.0 90 45.6
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 3.7e-13 78.6 95 49.5
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 3.7e-13 78.6 95 50.5
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 4.8e-13 78.2 89 51.7
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 1.1e-12 77.0 91 48.4
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 1.4e-12 76.6 89 51.7
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.4e-12 76.6 89 48.3
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 1.4e-12 76.6 92 48.9
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 3.1e-12 75.5 89 49.4
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 3.1e-12 75.5 89 48.3
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 3.1e-12 75.5 85 49.4
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 4.1e-12 75.1 94 47.9
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 7.0e-12 74.3 100 41.0
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 1.6e-11 73.2 95 48.4
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 1.6e-11 73.2 95 48.4
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 1.6e-11 73.2 109 45.9
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 7.7e-11 70.9 90 41.1
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 7.7e-11 70.9 115 40.9
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 7.7e-11 70.9 99 45.5
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.0e-10 70.5 93 45.2
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 1.3e-10 70.1 88 47.7
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.3e-10 70.1 65 56.9
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 1.3e-10 70.1 87 49.4
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 2.3e-10 69.3 90 46.7
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 2.9e-10 68.9 90 47.8
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 3.8e-10 68.6 87 46.0
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 1.5e-09 66.6 84 45.2
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.9e-09 66.2 90 45.6
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 3.3e-09 65.5 93 44.1
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 7.2e-09 64.3 98 44.9
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.2e-08 63.5 84 40.5
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 2.8e-08 62.4 72 51.4
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 6.1e-08 61.2 87 46.0
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 1.5e-06 56.6 95 43.2
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 5.7e-06 54.7 100 39.0


User provided reference genes

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